J. Am. Chem. Soc., 126 (13), 4086 -4087, 2004. 10.1021/ja039823p S0002-7863(03)09823-8
Web Release Date: March 11, 2004

Copyright © 2004 American Chemical Society

Direct Detection of Genomic DNA by Enzymatically Amplified SPR Imaging Measurements of RNA Microarrays

Terry T. Goodrich, Hye Jin Lee, and Robert M. Corn*

Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706

corn@chem.wisc.edu

Received November 26, 2003

Abstract:

A novel surface enzymatic reaction scheme that amplifies the optical response of RNA microarrays to the binding of complementary DNA is developed for the direct detection and analysis of genomic DNA. The enzyme RNase H is shown to selectively and repeatedly destroy RNA from DNA-RNA heteroduplexes on gold surfaces; when used in conjunction with the label-free technique of surface plasmon resonance (SPR) imaging, DNA oligonucleotides can be detected at a concentration of 1 fM. This enzymatically amplified SPR imaging methodology is then utilized to detect and identify the presence of the TSPY gene in human genomic DNA without PCR amplification.


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