J. Chem. Inf. Comput. Sci., 43 (2), 493 -500, 2003. 10.1021/ci025584y S0095-2338(02)05584-1
Web Release Date: February 11, 2003

Copyright © 2003 American Chemical Society

The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics

Christoph Steinbeck,* Yongquan Han, Stefan Kuhn, Oliver Horlacher, Edgar Luttmann, and Egon Willighagen#

Max-Planck-Institute of Chemical Ecology, Jena, Germany, TheraSTrat AG, Allschwil, Switzerland, Institute of Organic Chemistry, University of Paderborn, Germany, and Nijmegen, The Netherlands

Received August 17, 2002

Abstract:

The Chemistry Development Kit (CDK) is a freely available open-source Java library for Structural Chemo- and Bioinformatics. Its architecture and capabilities as well as the development as an open-source project by a team of international collaborators from academic and industrial institutions is described. The CDK provides methods for many common tasks in molecular informatics, including 2D and 3D rendering of chemical structures, I/O routines, SMILES parsing and generation, ring searches, isomorphism checking, structure diagram generation, etc. Application scenarios as well as access information for interested users and potential contributors are given.


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