
Web Release Date: August 4,
Synthesis, DNA Affinity, and Antiprotozoal Activity of Fused Ring Dicationic Compounds and Their Prodrugs





and

Department of Chemistry and Center for Biotechnology and Drug Design, Georgia State University, Atlanta, Georgia 30303-3083, and Swiss Tropical Institute, CH4002, Basel, Switzerland
Received February 15, 2005
Abstract:
Dicationic guanidine, N-alkylguanidine, and reversed amidine derivatives of fused ring systems (9a-d, 12a-c, 13a, and 13b) have been synthesized from their corresponding bis-amines. DNA binding studies suggest that the diguanidines and the N-alkyl diguanidines fluorenes bind in the minor groove in a manner similar to that of the previously reported dicationic carbazole derivatives. The diguanidines and the N-alkyl diguanidines showed promising in vitro activity against both Trypanosoma brucei rhodesiense and Plasmodium falciparum. Promising in vivo biological results were obtained for the dicationic N-isopropylguanidino-9H-fluorene (12c), giving 4/4 cures of the treated animals in the STIB900 animal model for African trypanosomiasis. The N-methyl analogue (12a) showed high activity as well. In addition, with the goal of enhancing the oral bioavailability, two novel classes of potential guanidine prodrugs were prepared. The N-alkoxyguanidine derivatives (12d) and (12e) were not effective as prodrugs. In contrast, a number of the carbamates (11a,c-e) showed promising activity. The value of the carbamate prodrugs was clearly demonstrated by the results for (11c), which gave 4/4 cures on oral administration in the STIB900 mouse model.
Aromatic diamidines and related dicationic molecules
have been extensively studied for over 50 years as a
consequence of the broad spectrum antimicrobial activity reported for these molecules.1 Despite these efforts,
pentamidine (1), first reported in 1942,2 is the only
compound belonging to this class that has found significant human use. Pentamidine is currently used
against first-stage human African trypanosomiasis (HAT)
and antimony-resistant leishmaniasis and also as a
secondary drug for AIDS-related Pneumocystis jirovecii
pneumonia (PCP).1 An orally effective prodrug of furamidine (2) is currently in phase II clinical trials against
malaria, HAT, and PCP and represents a different
approach for administration of dicationic molecules.1,3-6
A fundamental element in the design of new potential
therapeutics of this type has been that the molecular
unit that bears the amidine groups should have a
complementary shape to that of the curve of the minor
groove of DNA.11,12
| Figure 1 Structures of key dicationic antimicrobial agents. |
The pK of aromatic amidines and guanidines is
greater than 10, and as a result, these type molecules
are charged at physiological pH.24,25
The synthesis of the diguanidino (9a-d and 12a-c)
and reversed diamidino (13a,b) derivatives of a variety
of fused ring systems, viz. fluorene, fluorenone, anthraquinone, and acridine, was achieved starting with
the diamino derivatives of tricyclic fused ring pharmacophores (Schemes 1-3). These key precursors were
either used directly as purchased or synthesized according to the literature methods by either catalytic or Zinin
reduction of the nitro counterparts (Scheme 1).37 The
not previously described reduction (H2/Pd/C) of 2,7-dinitro-9H-fluorene to the diamino derivative (7a) was
achieved in high yield. As depicted in Scheme 1,
synthesis of the guanidines (9a-d) was accomplished
in two successive steps. First, the diamino derivatives
(7a-d) were converted to the Boc-protected bisguanidines
(8a-d) by the HgCl2-promoted reaction with bis-Boc-protected S-methylpseudothiourea. The subsequent step
was the HCl-assisted deprotection of the Boc-protected
guanidines, providing the guanidine hydrochloride salts
9a-d.38-40
| Scheme 1. Guanidino Derivatives of Fused Ring Systems |
Scheme 2 depicts the synthesis of N-substituted
guanidines (12a-e), as well as the corresponding carbamate prodrugs (11a-g) of several of the synthesized
DNA-binding dications. Starting with the appropriate
diamine, reaction with ethyl isothiocyanatoformate gave
the carbamoyl thioureas (10a,b), which were further
reacted with various amines to furnish the carbamoyl
guanidines (11a-g).41-43
| Scheme 2. Synthesis of Fused Ring System N-Substituted Dicationic Guanidines and Their Potential Prodrugs |
The 1H NMR and the 13C NMR data for the carbamoyl
guanidine precursors of the N-alkoxyguanidines (11f,g)
showed two sets of peaks for all the aliphatic and the
aromatic functionalities present in the molecule, indicating the presence of a mixture of apparently two
inseparable compounds that were otherwise pure. Mixtures were not detected for the other carbamates (11a-e). The apparent mixtures for 11f and 11g were directly
subjected to alkaline hydrolysis yielding the corresponding N-alkoxyguanidines (12d,e) as single isomers, as
demonstrated by their 1H NMR and 13C NMR and other
data. Thus, it can be concluded that the carbamoyl
N-alkoxyguanidines (11f,g) likely exist in isomeric
forms, possibly syn and anti rotamers arising from
restricted rotation around the N-C bond of the carbamate (Figure 2).44-46
| Figure 2 Proposed structures for two possible carbamoyl N-alkoxyguanidine isomers. |
Finally, reversed diamidino derivatives of 2,7-diaminofluorene were prepared according to the reported method22,23,47 (Scheme 3) applying the reaction with the nonodoriferous reagent phenyl S-(2-naphthylmethyl)thioimidate or 2-pyridyl S-(2-naphthylmethyl)thioimidate, thus providing 13a or 13b, respectively. The corresponding reaction with the less basic diamines 7b-d failed. It is worth noting that the free bases of these compounds, being sparingly water-soluble, were converted to their hydrochloride salts to improve their aqueous solubility.
| Scheme 3. 9H-Fluorene Reversed Diamidines |
Relative Binding Affinity.
Tm Measurements.
Tm increases for compound complexes relative to uncomplexed DNA (
Tm) at specific DNA sequences provide an excellent method for ranking compound binding
affinities.1 The Tm increases caused by the compounds
in Table 1
have been determined for their complexes
with an AT polymer. The charged compounds have
Tm
values in the range 6.1-22
C (Table 1). The uncharged
prodrugs, as expected, do not increase the DNA Tm
within experimental error. The
Tm values for the fused
ring dications are modest compared to that of furamidine but are generally in the range of that of pentamidine. Introduction of N-alkyl groups on the guanidine
moiety (12a-c) resulted in a slight decrease in the
Tm
values, whereas introduction of aryl groups increased
the values, as in the case of the reversed diamidines
(13a,b). A similar effect was previously noted for N-substitution in unfused triaryl systems.21,22 While the
Tm value for the fluorene parent diguanidine (9a) is
significantly lower than that of furamidine, it is similar
to that of dicationic carbazoles, benzofurans, and
benzothiophenes.16-20 Comparison of the
Tm values of
9a to those of the corresponding fluorenone 9b, anthraquinone 9c, and acridine 9d diguanidines shows a
reduction in affinities as a result of the presence of a
carbonyl group and six-membered rings in the central
core of the fused ring system. The decline in
Tm values
may reflect steric clash of the central core of these other
systems with the floor of the groove.
Binding Mode: Circular Dichroism (CD) Spectroscopy. Binding of 9a, 13a, 9b, and 12a to poly(d(A-T)2) was characterized by CD spectroscopy in the wavelength range between 220 and 420 nm (Figure 3). The CD spectra monitor the asymmetric environment of the compounds when bound to DNA and therefore can be used to obtain information on the binding mode. The free compounds do not have CD spectra, but they have induced CD when bound to DNA. Minor groove binding is typically characterized by a strong positive CD signal at the maximum absorbance wavelength of the bound compound. Intercalation binding is generally characterized by weak CD signals that are usually negative but can be positive. Addition of 9a to DNA results in substantial positive CD signals between 270 and 335 nm, where the compound absorbs. Isoelliptic points are observed in the titration of 9a with DNA at 271 and 253 nm with large positive induced CD signals at 293 and 318 nm. A strong positive CD signal, centered at 330 nm, is also observed for the 13a-DNA complex with isoelliptic points at 288, 253, and 233 nm. A positive CD signal for the 9a complex is found at 263 nm where the compound absorbance overlaps with the DNA spectrum. An isoelliptic point is observed in the titration of 12a with DNA at 278 nm. Although the positive induced CD is characteristic of minor groove binding, the overlap of compound and DNA spectra prevents definitive conclusions for this compound. Strong positive CD signals arise at 280, 293, and 316 nm for 12a with isoelliptic points at 266, 253, and 224 nm. The large induced CD signals for the 9a-DNA, 13a-DNA, and 12a-DNA complexes suggest that they bind in the minor groove at AT DNA sequences. The results for 9b are consistent with minor groove binding, but spectral overlap complicates the interpretation from CD.
The preliminary biophysical studies with these dicationic molecules suggest that they bind in the DNA minor groove, similar to the carbazoles.19,20 As has been previously noted for the prodrugs, these molecules are essentially uncharged (because of the lower pK) and do not bind significantly to DNA.28,31
In Vitro Activities. Many of the diguanidines and the N-alkyl diguanidines show promising in vitro activity against both Trypanosoma brucei rhodesiense (9a,b and 12a-c) and Plasmodium falciparum (9a,c and 12a-12c) (Table 1) with IC50 values ranging from 2 to 40 nM. The number of dicationic compounds1,21,31 in the STI screen that have shown IC50 values versus Plasmodium falciparum of less than 5 nM is quite small (approximately 30), which places 9a in the category of very active compounds. In the fluorene series, the addition of an N-alkyl group (12a-c) reduces the antiprotozoan activity and the activity declines with increasing alkyl size. Generally, the reversed diamidines in the fluorene series (13a,b) and the guanidines with a six-membered central ring (9c,d) show significantly diminished activity. The prodrugs, as expected, show essentially no in vitro activity. Selectivity for the parasites is generally quite good as judged from their low toxicity for L-6 cells (Table 1).
A general characteristic that has been noted for numerous dicationic minor groove binding systems is the lack of a direct correlation between DNA affinity and in vitro activities.1,21,31 Some minimum threshold DNA affinity, which varies with class, seems to be required to observe activity because compounds that do not bind show negligible antimicrobial activity. High DNA affinity does not always lead to a correspondingly high antimicrobial activity; however, very low DNA affinity results in loss of biological activity.1,21,31 A similar result is apparent for the fused ring dications.
In Vivo Activities. Given their high antiparasitic
activity and low cell toxicity, several of the diguanidines
were advanced to the rigorous STIB900 animal model
for African trypanosomiasises (Table 2
). Despite the
quite good in vitro activity (IC50 = 24 nM), the diguanidinofluorene 9a was inactive on ip dosage. In contrast,
the diguanidinofluorenone 9b and the acridine 9d
analogues showed promising activity, providing 2/4
cures in this model. The N-alkylfluorene compounds
(12a-12c) exhibited excellent in vivo activity, providing
3/4, 5/7, and 4/4 cures, respectively. Interestingly 12b,
while showing good activity, apparently was also toxic
because one animal death was noted on the second
dosing in two different experiments. The toxicity is
acute, but the origin is unknown.
The utility of N-alkoxy analogues of diamidines as prodrugs has been quite clearly demonstrated,28-31 and we prepared 12d and 12e to test this approach with diguanidines. When these two molecules were evaluated on oral dosing in the STIB900 mouse model, both were found to be ineffective. Further work is required to determine if this result is due to lack of uptake or lack of bioconversion to the parent drug.
The potential prodrug 11a was also evaluated in the STIB900 model to determine if carbamates are useful as a means to improve oral bioavailability of the diguanidino compounds. While the prodrugs 11a, 11d, and 11e failed to provide cures, they did exhibit a 3-fold or greater increase in survival time of the test animals compared to ip dosing of the parent molecules and thus showed that carbamates of diguanidino analogues can potentially serve as useful prodrugs. The value of carbamate prodrugs is more clearly demonstrated by the results for the N-methyl carbamate (11c), which gave 4/4 cures on oral administration in this model. Unfortunately, the compound did not yield cures in the chronic mouse model (central nervous system involvement) for African trypanosomiasis (data not presented).
In conclusion, this work demonstrates that diguanidino fused ring systems are potential candidates as antiprotozoan agents. We have shown, for the first time, that carbamate derivatives of diguanidines, which are inactive in vitro and effective in vivo, can function as prodrugs. Other carbamates are being explored with the goal of optimizing oral efficacy of these diguanidines.
Absorbance Spectroscopy and Thermal Melting (Tm) Experiments. Experiments were done in MES10 buffer (0.01 M MES (2-(N-morpholino)ethanesulfonic acid), 0.001 M ethylenediaminetetraacetic acid (EDTA), and 0.1 M NaCl with the pH was adjusted to 6.25). DNA polymers were purchased from Pharmacia and characterized by their melting curves. Absorbance and thermal melting experiments were done using a Cary 300 Bio spectrophotometer with the software supplied with the instrument. For absorbance measurements, the buffer was scanned from 400 to 250 nm in 1 cm quartz cuvettes, aliquots of concentrated stock solutions of the compounds were titrated into the buffer, and the solutions were rescanned. The concentrations of the compounds were 1 × 10-5, 2 × 10-5, and 3 × 10-5 M. For thermal melting the concentration of the DNA was about 1 × 10-4 in bases and the ratio of the compound to DNA bases was 0.3.
Circular Dichroism. CD spectra were obtained on Jasco J-810 spectrometer in MES buffer. The software supplied by Jasco provided instrument control, data acquisition, and manipulation. DNA solutions in MES10 buffer were scanned in 1 cm quartz cuvettes. Aliquots of concentrated stock solutions of the compounds were titrated into DNA to give the desired ratio, and the complexes were rescanned.
Synthetic Protocols. Melting points were recorded using
a Thomas-Hoover (Uni-Melt) capillary melting point apparatus
and are uncorrected. TLC analysis was carried out on silica
gel 60 F254 precoated aluminum sheets and detected under UV
light. 1H and 13C NMR spectra were recorded employing a
Varian GX400 or Varian Unity Plus 300 spectrometer, and
chemical shifts (
) are in ppm relative to TMS as internal
standard. Mass spectra were recorded on a VG analytical 70-SE spectrometer (EI) or a ThermoFinningan LCQ MSD (ESI).
Elemental analyses were obtained from Atlantic Microlab Inc.
(Norcross, GA). Some compounds were analyzed correctly for
fractional moles of dichloromethane, water, and/or ethanol of
solvation. In each case 1H NMR showed the presence of the
indicated solvent(s). All chemicals and solvents (including
anhydrous solvents) were purchased from Aldrich Chemical
Co. or Lancaster Synthesis and used as purchased. Acetonitrile
and triethylamine were distilled from CaH2. Synthesis of the
bis-aminofluorenone (7b) and bis-aminoanthraquinone (7c)
was achieved as described in Scheme 1 according to the
literature.37 S-(2-Naphthylmethyl)thioacetimidate was prepared by adapting the reported procedure.46
2,7-Diamino-9H-fluorene (7a) (Scheme 1). To a suspension of 2,7-dinitro-9H-fluorene (5 g, 19.5 mmol) in EtOAc (50
mL) and EtOH (50 mL) was added Pd/C (1.25 g). The reaction
mixture was shaken under hydrogen (55 psi) for 6 h, after
which the reaction mixture was filtered through a pad of
Celite. The filtrate was eveporated to dryness to give off-white
shiny crystals that needed no further purification (3.82 g,
quantitative): mp 159-60
C, 1H NMR (DMSO-d6)
3.56 (s,
2H), 4.89 (br s, 4H), 6.47 (d, J = 8.1 Hz, 2H), 6.67 (s, 2H), 7.24
(d, J = 8.1 Hz, 2H).
Preparation of Bis(N',N' '-di-Boc-guanidino) Derivatives (General Procedure) (Scheme 1). 2,7-Bis(N',N' '-di-Boc-guanidino)-9H-fluorene (8a). To a solution of 2,7-diaminofluorene (7a) (0.49 g, 2.5 mmol) in anhydrous DMF
(15 mL) was added 1,3-bis(tert-butoxycarbonyl)-2-methylthiopseudourea (1.52 g, 5.25 mmol), triethylamine (1.52 g, 15
mmol), and mercury(II) chloride (1.56 g, 5.75 mmol). The
suspension was kept stirring at room temperature overnight.
The reaction mixture was diluted with CH2Cl2, washed with
Na2CO3 solution, and filtered through a pad of Celite. The
organic layer was washed with water (3×) followed by brine
and then dried over anhydrous Na2SO4. After evaporation of
the solvent, the obtained residue was crystallized from CH2Cl2/MeOH, giving a light-yellow solid (1.15 g, 68%): mp >340
C; 1H NMR (CDCl3)
1.52, 1.54 (2s, 36H), 3.91 (s, 2H), 7.47
(d, J = 8.4 Hz, 2H), 7.64 (d, J = 8.4 Hz, 2H), 7.90 (s, 2H),
10.43 (br s, 2H), 11.68 (br s, 2H); 13C NMR (CDCl3)
163.6,
153.5, 153.4, 144.2, 138.1, 135.3, 120.9, 119.7, 118.9, 83.7, 79.6,
37.2, 28.2, 28.1. Anal. Calcd for C35H48N6O8 (680.79): C, 61.75;
H, 7.11; N, 12.34. Found: C, 61.50; H, 7.11; N, 12.36.
2,7-Bis(N',N' '-di-Boc-guanidino)fluoren-9-one (8b). Orange solid (1.16 g, 65%), mp >340
C; 1H NMR (CDCl3)
1.51,
1.54 (2s, 36H), 7.42 (d, J = 8.4 Hz, 2H), 7.77 (s, 2H), 7.82 (d,
J = 8.4 Hz, 2H), 10.46 (br s, 2H), 11.63 (br s, 2H); 13C NMR
(CDCl3)
192.7, 163.3, 153.5, 153.3, 140.4, 137.4, 135.2, 128.0,
120.6, 118.6, 84.0, 79.9, 28.1, 28.0. Anal. Calcd for C35H46N6O9·
0.1CH2Cl2 (703.26): C, 59.94; H, 6.62; N, 11.95. Found: C,
59.69; H, 6.67; N, 12.13.
2,7-Bis(N',N' '-di-Boc-guanidino)anthraquinone (8c). Yellow solid (1.24 g, 82%), mp >340
C; 1H NMR (CDCl3)
1.54,
1.56 (2 s, 36H), 8.24 (s, 2H), 8.30 (d, J = 8.7 Hz, 2H), 8.43 (d,
J = 8.7 Hz, 2H), 10.82 (br s, 2H), 11.62 (br s, 2H); 13C NMR
(CDCl3)
182.5, 181.2, 163.1, 153.2, 142.4, 134.5, 129.5, 128.9,
126.7, 119.0, 84.4, 80.3, 28.1, 28.0. Anal. Calcd for C36H46N6O10·
0.5CH2Cl2 (765.25): C, 57.28; H, 6.19. Found: C, 57.30; H,
6.09.
3,6-Bis(N',N' '-di-Boc-guanidino)acridine (8d). Canary-yellow fluffy solid (0.88 g, 73%), mp >340
C; 1H NMR (CDCl3)
1.53, 1.55 (2s, 36H), 7.78 (dd, J = 9.0, 2.1 Hz, 2H), 7.9 (d, J
= 9.0 Hz, 2H), 8.45 (d, J = 2.1 Hz, 2H), 8.6 (s, 1H), 10.69 (s,
2H), 11.68 (s, 2H); 13C NMR (CDCl3)
163.5, 153.4, 153.3,
149.9, 138.5, 135.1, 128.8, 123.8, 122.3, 118.9, 83.9, 79.7, 28.2,
28.1. Anal. Calcd for C35H47N7O8·0.1CH2Cl2 (702.28): C, 60.02;
H, 6.77; N, 13.96. Found: C, 59.97; H, 6.88; N, 13.90.
Deprotection of N',N' '-Di-Boc-guanidines (General
Procedure) (Scheme 1). 2,7-Bis-guanidino-9H-fluorene
Dihydrochloride (9a). The N',N' '-di-Boc-guanidine (8a) (0.25
g, 0.4 mmol) was dissolved in CH2Cl2 (10 mL) and diluted with
dry EtOH (15 mL), and the chilled solution was saturated with
dry HCl. The reaction mixture was then kept stirring at room
temperature for 3 days (drying tube), where a precipitate of
the product started forming over time. After evaporation of
the solvent to dryness, the residue was washed with ether
multiple times and was dried under reduced pressure at 50-60
C overnight to give a whitish-yellow solid of the bis-guanidine dihydrochloride (0.13 g): mp >340
C; 1H NMR
(DMSO-d6)
3.95 (s, 2H), 7.24 (d, J = 8.4 Hz, 2H), 7.45 (s,
2H), 7.58 (br s, 8H), 7.95 (d, J = 8.4 Hz, 2H), 10.23 (br s, 2H);
13C NMR (DMSO-d6)
156.1, 144.6, 138.6, 133.9, 123.4, 121.4,
120.9, 36.9; MS (EI) m/z (rel intens) 281 (M+ + 1, 5), 252 (100).
Anal. Calcd for C15H16N6·2HCl·0.25C2H5OH (364.76): C, 51.04;
H, 5.39; N, 23.04, Cl, 19.44. Found: C, 50.74; H, 5.26; N, 22.99,
Cl, 19.87.
2,7-Bis-guanidinofluoren-9-one Dihydrochloride (9b).
Green solid (0.26 g), mp >340
C; 1H NMR (DMSO-d6)
7.43-7.46 (m, 4H), 7.68 (br s, 8H), 7.86 (d, J = 8.4 Hz, 2H), 10.25
(br s, 2H); 13C NMR (DMSO-d6)
191.58, 156.0, 140.9, 136.5,
134.6, 130.8, 122.4, 119.9; MS (EI) m/z (rel intens) 295 (M+ +
1, 23), 278 (100). Anal. Calcd for C15H14N6O·2HCl·0.35H2O
(373.53): C, 48.23; H, 4.51; N, 22.49, Cl, 18.95. Found: C,
48.51; H, 4.55; N, 22.13, Cl, 18.93.
2,7-Bis-guanidinoanthraquinone Dihydrochloride (9c).
Orange-red solid (0.22 g), mp >340
C (dec); 1H NMR (DMSO-d6)
7.75 (d, J = 8.4 Hz, 2H), 7.97 (s, 2H), 8.06 (br s, 8H),
8.24 (d, J = 8.4 Hz, 2H), 10.87 (br s, 2H); 13C NMR (DMSO-d6)
181.6, 180.4, 155.6, 142.1, 134.2, 129.3, 128.9, 127.6,
119.4; MS (EI) m/z (rel intens) 323 (M+ + 1, 100), 162 (59).
Anal. Calcd for C16H14N6O2·2HCl·1.66H2O (425.15): C, 45.20;
H, 4.58; N, 19.77. Found: C, 45.24; H, 4.58; N, 19.47.
3,6-Bis-guanidinoacridine Trihydrochloride (9d). Orange solid (0.33 g), mp >340
C; 1H NMR (DMSO-d6)
7.75
(dd, J = 8.4, 2.1 Hz, 2H), 7.96 (d, J = 2.1 Hz, 2H), 8.04 (br s,
8H), 8.23 (d, J = 8.4 Hz, 2H), 8.41 (s, 1H), 10.83 (br s, 2H);
13C NMR (DMSO-d6)
181.6, 180.5, 155.6, 142.1, 134.2, 129.3,
128.9, 127.7, 119.4. Anal. Calcd for C15H15N7·3HCl·C2H5OH·0.33H2O (454.72): C, 44.90; H, 5.46; N, 21.56, Cl, 23.39.
Found: C, 45.08; H, 5.10; N, 21.48, Cl, 23.49.
Preparation of Carbamoyl Thiourea Derivatives
(Scheme 2). 2,7-Bis(N'-ethoxycarbonylthiourea)-9H-fluorene (10a). A solution of 2,7-diamino-9H-flourene (7a) (1 g,
5.1 mmol) in CH2Cl2 (10 mL), to which was added ethyl
isothiocyanatoformate (1.47 g, 11.2 mmol), was stirred at room
temperature overnight. After flash chromatography, the reaction mixture was diluted with hexane and the precipitate
formed was collected and dried to yield the bis-carbamoylthiourea as a light-brown solid (2.32 g, quantitative): mp >340
C (dec); 1H NMR (DMSO-d6)
1.27 (t, J = 6.9 Hz, 6H), 3.95
(s, 2H), 4.23 (q, J = 6.9 Hz, 4H), 7.75 (d, J = 8.4 Hz, 2H),
7.86-7.89 (m, 4H), 11.28 (s, 2H), 11.64 (s, 2H); 13C NMR
(DMSO-d6)
178.1, 153.4, 143.7, 138.2, 136.5, 123.4, 121.8,
119.7, 61.9, 36.8, 14.1; MS (EI) m/z (rel intens) 459 (M+ + 1,
18), 374.1 (8), 328 (100), 319 (8), 151 (12). Anal. Calcd for
C21H22N4O4S2 (458.56): C, 55.00; H, 4.83. Found: C, 55.21;
H, 4.83.
2,7-Bis(N'-ethoxycarbonylthiourea)fluoren-9-one (10b).
To a suspension of 2,7-diaminofluorenone (7b) (0.3 g, 1.4 mmol)
in toluene (10 mL) was added ethyl isothocyanatoformate (0.41
g, 3.1 mmol). The reaction mixture was heated at reflux for
10 h. After cooling to room temperature, the reaction mixture
was diluted with hexanes. The orange precipitate obtained was
filtered off and crystallized from aqueous EtOH (0.66 g, 98%):
mp >340
C (dec); 1H NMR (DMSO-d6)
1.26 (t, J = 7.2 Hz,
6H), 4.22 (q, J = 7.2 Hz, 4H), 7.69 (dd, J = 8.1, 1.8 Hz, 2H),
7.80 (d, J = 8.1 Hz, 2H), 7.97 (d, J = 1.8 Hz, 2H), 11.39 (s,
2H), 11.60 (s, 2H); 13C NMR (DMSO-d6)
191.6, 178.7, 153.4,
140.8, 139.0, 133.8, 130.9, 121.2, 120.2, 62.0, 14.0. Anal. Calcd
for C21H20N4O5S2·H2O (490.55): C, 51.41; H, 4.52. Found: C,
51.27; H, 4.54.
Preparation of N-Substituted Carbamoyl Guanidines
(General Procedure) (Scheme 2). 2,7-Bis(N'-ethoxycarbonyl)guanidino-9H-fluorene (11a). A stirred solution of
carbamoyl thiourea (10a) (0.58 g, 1.26 mmol), ammonia (0.5
M solution in dioxane) (10 mL, 5.05 mmol), and diisopropylethylamine (0.98 g, 7.56 mmol) in anhydrous CH2Cl2 (10 mL)
was cooled to 0
C. EDCI (N-ethyl-N'-(3-dimethylaminopropyl)carbodiimide hydrochloride) (0.96 g, 5.05 mmol) was added,
and the solution was stirred at room temperature overnight.
The reaction mixture was washed with water (3×) followed
by brine and dried over anhydrous Na2SO4. The residue
remaining after removal of the solvent was crystallized from
EtOH/water (0.45 g, 84%): mp >340
C; 1H NMR (DMSO-d6)
1.16 (t, J = 7.2 Hz, 6H), 3.87 (s, 2H), 3.98 (q, J = 7.2 Hz,
4H), 7.33 (d, J = 8.4 Hz, 2H), 7.54 (br s, 4H), 7.65 (s, 2H), 7.72
(d, J = 8.4 Hz, 2H), 9.13 (br s, 2H); 13C NMR (DMSO-d6)
163.1, 159.0, 143.4, 136.9, 136.3, 120.4, 119.4, 118.4, 59.4, 36.4,
14.4. Anal. Calcd for C21H24N6O4·0.5C2H5OH (447.48): C,
59.04; H, 6.08; N, 18.78. Found: C, 58.96; H, 5.74; N, 18.88.
2,7-Bis(N'-ethoxycarbonyl)guanidinofluoren-9-one
(11b). Brick-red solid (0.35 g, 75%), mp >340
C; 1H NMR
(DMSO-d6)
1.17 (t, J = 6.9 Hz, 6H), 4.00 (q, J = 6.9 Hz, 4H),
7.47 (dd, J = 8.1, 1.8 Hz, 2H), 7.59 (d, J = 8.1 Hz, 2H), 7.77
(d, J = 1.8 Hz, 2H), 9.31 (br s, 2H); 13C NMR (DMSO-d6)
192.9, 162.6, 158.6, 139.6, 138.4, 134.1, 126.5, 120.8, 116.7,
59.9, 14.6. Anal. Calcd for C21H22N6O5·0.15C2H5OH·0.5H2O
(454.35): C, 56.30; H, 5.30; N, 18.49. Found: C, 56.54; H, 5.10;
N, 18.47.
2,7-Bis(N'-ethoxycarbonyl-N' '-methyl)guanidino-9H-fluorene (11c). With the same procedure for preparation of
11a, methylamine (2 M solution in THF) was used for the
transformation of the thiourea compound (10a) into the
N-substituted guanidine 11c. The reaction yielded an off-white
solid (0.53 g, 93%): mp 157-8
C; 1H NMR (DMSO-d6)
1.15
(t, J = 7.2 Hz, 6H), 2.83 (s, 6H), 3.90 (s, 2H), 3.94 (q, J = 7.2
Hz, 4H), 7.32 (d, J = 8.1 Hz, 2H), 7.54 (s, 2H), 7.83 (d, J = 8.1
Hz, 2H); 13C NMR (DMSO-d6)
161.9, 157.9, 143.7, 137.7,
135.9, 123.1, 121.1, 119.9, 59.9, 36.5, 28.3, 14.5; MS (ESI) m/z
(rel intens) 453 (M+ + 1, 100), 407 (39), 323 (15). Anal. Calcd
for C23H28N6O4·H2O (470.52): C, 58.71; H, 6.42; N, 17.86.
Found: C, 58.81; H, 6.39; N, 17.71.
2,7-Bis(N'-ethoxycarbonyl-N' '-ethyl)guanidino-9H-fluorene (11d). Following the general procedure, starting with
10a and utilizing ethylamine hydrochloride, the target compound was obtained as a beige solid (0.79 g, 96%): mp 220-2
C; 1H NMR (DMSO-d6)
1.12-1.19 (m, 12H), 3.32 (t, J = 6.9
Hz, 4H), 3.89 (s, 2H), 3.95 (q, J = 6.9 Hz, 4H), 7.31 (d, J = 8.1
Hz, 2H), 7.51 (s, 2H), 7.81 (d, J = 8.1 Hz, 2H); 13C NMR
(DMSO-d6)
163.3, 158.1, 143.7, 137.5, 136.0, 123.1, 121.1,
120.0, 59.7, 36.5, 35.7, 14.8, 14.6; MS (ESI) m/z (rel intens)
481 (M+, 80), 435 (20), 364 (10), 339 (12), 241 (100). Anal. Calcd
for C25H32N6O4·0.25H2O (485.06): C, 61.90; H, 6.75; N, 17.32.
Found: C, 61.66; H, 6.79; N, 17.37.
2,7-Bis(N'-ethoxycarbonyl-N' '-isopropyl)guanidino-9H-fluorene (11e). With isopropylamine and the same synthetic
steps used for preparing 11a, a beige solid was obtained (0.39
g, 88%): mp 142-4
C; 1H NMR (DMSO-d6)
0.84 (t, J = 7.2
Hz, 6H), 1.10-1.23 (m, 12H), 3.88 (s, 2H), 3.93 (q, J = 7.2 Hz,
4H), 4.10-4.21 (m, 2H), 7.31 (d, J = 8.4 Hz, 2H), 7.52 (s, 2H),
7.80 (d, J = 8.4 Hz, 2H); 13C NMR (DMSO-d6)
163.42, 157.38,
143.54, 137.36, 136.25, 122.93, 120.93, 119.72, 59.60, 42.35,
36.47, 22.53, 14.57; MS (ESI) m/z (rel intens) 509 (M+ + 1,
19), 255 (100). Anal. Calcd for C27H36N6O4·0.25C2H5OH
(520.13): C, 63.50; H, 7.26; N, 16.15. Found: C, 63.20; H, 7.06;
N, 16.35.
2,7-Bis(N'-ethoxycarbonyl-N' '-methoxy)guanidino-9H-fluorene (11f). With the general procedure and O-methylhydroxylamine hydrochloride, a tan white solid was obtained
(0.55 g, 87%): mp 180-2
C; 1H NMR (DMSO-d6)
0.92-0.95
(m, 6H), 1.20 (t, J = 6.9 Hz, 6H), 3.67 (s, 6H), 3.69 (s, 6H),
3.73-3.86 (m, 8H), 4.10 (q, J = 6.9 Hz, 4H), 6.99 (d, J = 8.1
Hz, 2H), 7.16 (s, 2H), 7.35 (d, J = 8.1 Hz, 2H), 7.55-7.62 (m,
6H), 8.34 (br s, 1H), 8.36 (br s, 1H), 8.70 (br s, 2H), 9.13 (br s,
2H), 9.15 (br s, 2H); MS (ESI) m/z (rel intens) 485 (M+ + 1,
100).
2,7-Bis(N'-ethoxycarbonyl-N' '-isobutoxy)guanidino-9H-fluorene (11g). Following the general procedure, O-isobutylhydroxylamine hydrochloride was used to prepare the
target compound, which was obtained as creamy white crystals
(0.8 g, 93%): mp 122-5
C; 1H NMR (DMSO-d6)
0.88-0.99
(m, 30H), 1.21 (t, J = 7.2 Hz, 6H), 1.92-2.02 (m, 4H), 3.65 (d,
J = 6.6 Hz, 8H), 3.74-3.78 (m, 4H), 3.85 (q, J = 7.2 Hz, 4H),
4.11 (q, J = 7.2 Hz, 4H), 7.00 (d, J = 8.1 Hz, 2H), 7.17 (s, 2H),
7.35 (d, J = 8.1 Hz, 2H), 7.55-7.62 (m, 6H), 8.19 (br s, 1H),
8.21 (br s, 1H), 8.67 (br s, 1H), 8.68 (br s, 1H), 9.01 (br s, 1H),
9.02 (br s, 1H), 9.10 (br s, 1H), 9.11 (br s, 1H); 13C NMR
(DMSO-d6)
154.0, 153.9, 153.3, 143.4, 143.3, 143.1, 142.9,
142.9, 142.3, 142.2, 138.8, 138.6, 137.9, 137.7, 135.8, 135.6,
134.4, 134.2, 119.7, 119.4, 199.1, 118.8, 117.7, 117.6, 116.6,
114.5, 79.5, 79.3, 61.1, 60.4, 36.6, 36.5, 36.3, 27.3, 27.3, 19.3,
14.4; MS (ESI) m/z (rel intens) 569 (M+ + 1, 100).
Preparation of N-Substituted Guanidines (General
Procedure) (Scheme 2). 2,7-Bis(N'-methyl)guanidino-9H-fluorene (12a). The substituted guanidine 11c (0.5 g, 1.1
mmol) was suspended in EtOH (5 mL), and 1 N KOH (11 mL,
11 mmol) was then added. The reaction mixture was kept
stirring for 10 h, maintaining the temperature at 50
C. The
solvent was evaporated, and the residue was washed multiple
times with water and crystallized from aqueous EtOH to give
a light-orange solid (0.24 g, 70%): mp 240-2
C (dec); 1H NMR
(DMSO-d6)
2.66 (s, 6H), 3.69 (s, 2H), 4.96 (br s, 4H), 5.34 (br
s, 2H), 6.70 (d, J = 8.1 Hz, 2H), 6.90 (s, 2H), 7.50 (d, J = 8.1
Hz, 2H).
For preparation of the HCl salt, a solution of the free base
in dry EtOH (20 mL) chilled in an ice bath was treated with
dry HCl gas for 10 min. The reaction mixture was concentrated
under reduced pressure and then diluted with ether. The
precipitate formed was collected by filtration to give an orange
solid (0.16 g): mp 276-8
C; 1H NMR (DMSO-d6)
2.84 (s,
6H), 3.96 (s, 2H), 7.25 (d, J = 8.4 Hz, 2H), 7.46 (s, 2H), 7.77
(br s, 2H), 7.89 (br s, 2H), 7.95 (d, J = 8.4 Hz, 2H), 10.01 (br
s, 2H); 13C NMR (DMSO-d6)
155.7, 144.5, 138.6, 134.2, 123.5,
121.5, 120.9, 36.6, 28.3; MS (ESI) m/z (rel intens) 309 (M+ +
1, 100), 155 (9). Anal. Calcd for C17H20N6·2HCl·0.25C2H5OH·0.75H2O (406.33): C, 51.73; H, 6.20; N, 20.68. Found: C, 51.77;
H, 6.24; N, 20.48.
2,7-Bis(N'-ethyl)guanidino-9H-fluorene (12b). Free
Base. Starting with 11d and following the general procedure,
a beige solid was obtained (0.24 g, 85%): mp 155-7
C (dec);
1H NMR (DMSO-d6)
1.07 (t, J = 7.2 Hz, 6H), 3.14 (q, J =
7.2 Hz, 4H), 3.68 (s, 2H), 5.00 (br s, 6H), 6.68 (d, J = 8.1 Hz,
2H), 6.88 (s, 2H), 7.49 (d, J = 8.1 Hz, 2H); 13C NMR (DMSO-d6)
151.2, 148.9, 143.3, 134.3, 121.4, 119.6, 118.9, 36.2, 35.1,
15.0; MS (ESI) m/z (rel intens) 337 (M+ + 1, 90), 292 (60), 205
(50), 169 (100).
Dihydrochloride Salt. Bright-yellow solid, mp 193-5
C
(dec); 1H NMR (DMSO-d6)
1.14 (t, J = 7.2 Hz, 6H), 3.28 (q,
J = 7.2 Hz, 4H), 3.95 (s, 2H), 7.24 (d, J = 8.1 Hz, 2H), 7.44 (s,
2H), 7.74 (br s, 4H), 7.95 (d, J = 8.1 Hz, 2H), 8.03 (br s, 2H),
9.96 (br s, 2H). Anal. Calcd for C19H24N6·2HCl·1.75H2O·0.2C2H5OH (450.09): C, 51.76; H, 6.87; N, 18.67. Found: C, 51.86; H,
6.64; N, 18.68.
2,7-Bis(N'-isopropyl)guanidino-9H-fluorene (12c). Free
Base. Starting with (11e) and following the general procedure,
a salmon-orange solid was obtained (0.17 g, 79%): mp 247-9
C (dec); 1H NMR (DMSO-d6)
1.11 (d, J = 5.4 Hz, 12H), 3.68
(s, 2H), 3.83-3.87 (m, 2H), 4.93 (br s, 4H), 5.38 (br s, 2H),
6.69 (d, J = 8.1 Hz, 2H), 6.89 (s, 2H), 7.49 (d, J = 8.1 Hz, 2H).
Dihydrochloride Salt. Shiny yellow crystals, mp 308-9
C (dec); 1H NMR (DMSO-d6)
1.18 (d, J = 6.3 Hz, 12H), 3.85-3.94 (m, 4H), 7.23 (d, J = 8.4 Hz, 2H), 7.43 (s, 2H), 7.71 (br s,
4H), 7.93 (d, J = 8.4 Hz, 2H), 8.05 (br s, 1H), 8.07 (br s, 1H),
9.88 (br s, 2H); 13C NMR (DMSO-d6)
153.9, 144.8, 138.9,
134.5, 123.7, 121.6, 121.1, 43.8, 22.3; HRMS calcd for MH +
C21H28N6: 365.2454. Observed 365.2467. Anal. Calcd for
C21H28N6·2HCl·1.4H2O (462.63): C, 54.52; H, 7.14; N, 18.17.
Found: C, 54.51; H, 6.74; N, 17.79.
2,7-Bis(N'-methoxy)guanidino-9H-fluorene (12d). Free
Base. With 11f as a starting material, a pink solid was
obtained (0.17 g, 79%): mp 200-2
C (dec); 1H NMR (DMSO-d6)
3.60 (s, 6H), 3.76 (s, 2H), 5.46 (br s, 4H), 7.20 (dd, J =
8.4 Hz, 2H), 7.51-7.54 (m, 4H), 7.90 (br s, 2H); 13C NMR
(DMSO-d6)
151.6, 143.1, 139.5, 133.7, 118.8, 116.1, 114.1,
60.5, 36.5; MS (ESI) m/z (rel intens) 341 (M+ + 1, 48), 168
(100).
Dihydrochloride Salt. Shiny tan-white solid, mp 248-9
C (dec); 1H NMR (DMSO-d6)
3.71 (s, 6H), 3.96 (s, 2H), 7.28
(d, J = 8.1 Hz, 2H), 7.49 (s, 2H), 7.96 (d, J = 8.1 Hz, 2H), 8.24
(br s, 4H), 10.43 (br s, 2H), 11.64 (br s, 2H); 13C NMR (DMSO-d6)
156.1, 144.5, 138.8, 133.4, 123.5, 121.5, 120.9, 64.5, 36.6.
Anal. Calcd for C17H20N6O2·2HCl·0.5C2H5OH (436.33): C,
49.64; H, 5.77; N, 19.26. Found: C, 49.95; H, 5.65; N, 19.40.
2,7-Bis(N'-isobutoxy)guanidino-9H-fluorene (12e). Free
Base. Use of 11g and the general procedure provided a brick-red solid (0.16 g, 62%): mp 198-200
C; 1H NMR (DMSO-d6)
0.90 (d, J = 6.9 Hz, 12H), 1.93-2.02 (m, 2H), 3.55 (d, J =
6.9 Hz, 4H), 3.74 (s, 2H), 5.32 (br s, 4H), 7.21 (dd, J = 8.4, 1.8
Hz, 2H), 7.49-7.52 (m, 4H), 7.82 (br s, 2H); 13C NMR (DMSO-d6)
151.5, 143.1, 139.4, 133.8, 118.8, 116.3, 114.3, 79.1, 36.5,
27.3, 19.3; MS (ESI) m/z (rel intens) 425 (M+ + 1, 100), 245
(10), 156 (56).
Hydrochloride Salt. Pink solid, mp 251-2
C (dec); 1H
NMR (DMSO-d6)
0.91 (d, J = 6.9 Hz, 12H), 1.97-2.06 (m,
2H), 3.65 (d, J = 6.9 Hz, 4H), 3.95 (s, 2H), 7.28 (d, J = 8.4 Hz,
2H), 7.48 (s, 2H), 7.96 (d, J = 8.4 Hz, 2H), 8.16 (br s, 4H),
10.36 (br s, 2H), 11.65 (br s, 2H). Anal. Calcd for C23H32N6O2·2HCl (496.21): C, 55.53; H, 6.88; N, 16.89. Found: C, 55.45;
H, 6.87; N, 16.70.
Preparation of Reversed Amidines (General Procedure) (Scheme 3). 2,7-Bis[4-(iminobenzylamino)]-9H-fluorene (13a). Free Base. A solution of 2,7-diamino-9H-fluorene (0.3 g, 1.5 mmol) in dry MeCN (10 mL) was diluted
with dry EtOH (15 mL) and chilled in an ice-water bath. The
solution was then treated with S-(2-naphthylmethyl)thiobenzimidate hydrobromide (1.13 g, 3.15 mmol). The reaction
mixture was kept stirring at room temperature overnight, after
which the solvent was evaporated to dryness leaving behind
an oily residue that was triturated with ether to give a solid
of the hydrobromide salt. The solid was then dissolved in EtOH
and basified with 1 N NaOH, and the free base was extracted
with EtOAc. After the sample was dried over Na2SO4, the
solvent was evaporated to dryness, giving an off-white solid
(0.45 g, 63%): mp 240-2
C; 1H NMR (DMSO-d6)
3.83 (s,
2H), 6.31 (br s, 4H), 6.83-6.85 (m, 2H), 7.05 (s, 2H), 7.39-7.46 (m, 6H), 7.71 (d, J = 8.4 Hz, 2H), 7.96-7.98 (m, 4H); 13C
NMR (DMSO-d6)
153.9, 148.5, 143.8, 135.9, 135.7, 129.9,
127.9, 126.9, 120.3, 119.7, 118.3, 36.5.
Hydrochloride Salt. An ice bath cold solution of the free
base in dry EtOH was treated with HCl gas for 5-10 min,
after which the mixture was concentrated to near dryness and
the suspension was diluted with ether to furnish a yellow solid
(0.28 g): mp 286-8
C; 1H NMR (DMSO-d6)
4.09 (s, 2H),
7.53 (d, J = 8.4 Hz, 2H), 7.65-7.70 (m, 4H), 7.75-7.79 (m,
4H), 7.95-7.97 (m, 2H), 8.16 (d, J = 8.4 Hz, 2H), 9.16 (br s,
2H), 9.86 (br s, 2H), 11.67 (br s, 2H); 13C NMR
163.1, 144.9,
140.1, 133.7, 133.6, 128.9, 128.8, 128.6, 124.5, 122.5, 121.6,
36.9; MS (EI) m/z (rel intens) 402 (M+, 100), 299 (38), 197 (9),
196 (60), 151 (7), 103 (32), 77 (10). Anal. Calcd for C27H22N4·2HCl·0.25C2H5OH·H2O (504.94): C, 65.41; H, 5.49; N, 11.09;
Cl, 14.04. Found: C, 65.76; H, 5.40; N, 10.87; Cl, 14.09.
2,7-Bis[4-[imino-(2-pyridylmethyl)]amino]-9H-fluorene (13b). Free Base. The general procedure was used
employing 2,7-diamino-9H-fluorene (0.5 g, 2.95 mmol) and
S-(2-naphthylmethyl)-2-pyridylthioimidate hydrobromide (2.22
g, 6.2 mmol) to give the reversed amidine as shiny yellow
crystals (0.80 g, 67%): mp 230-2
C; 1H NMR (DMSO-d6)
3.84 (s, 2H), 6.56 (br s, 4H), 6.91 (d, J = 8.4 Hz, 2H), 7.11 (s,
2H), 7.53-7.57 (m, 2H), 7.76 (d, J = 8.4 Hz, 2H), 7.93-7.98
(m, 2H), 8.33 (d, J = 7.8 Hz, 2H), 8.63 (d, J = 7.8 Hz, 2H); 13C
NMR (DMSO-d6)
159.3, 149.7, 144.8, 144.5, 140.2, 138.2,
133.3, 128.5, 124.7, 124.5, 122.7, 121.5, 36.8.
Hydrochloride Salt. Yellow solid (0.33 g), mp 302-4
C;
1H NMR (DMSO-d6)
4.08 (s, 2H), 7.53 (d, J = 8.1 Hz, 2H),
7.74 (s, 2H), 7.83-7.87 (m, 2H), 8.14-8.24 (m, 4H), 8.58 (d, J
= 8.1 Hz, 2H), 8.89 (d, J = 7.2 Hz, 2H), 9.39 (br s, 2H), 10.18
(br s, 2H); 13C NMR (DMSO-d6)
159.6, 149.7, 144.0, 143.9,
140.4, 138.5, 133.5, 128.6, 124.9, 124.2, 122.9, 121.8, 36.8; MS
(EI) m/z (rel intens) 404 (M+, 100), 300 (28), 283 (6), 196 (33),
152 (9), 105 (28), 78 (21). Anal. Calcd for C25H20N6·3.5HCl·0.33C2H5OH·H2O (565.29): C, 54.52; H, 4.89; N, 14.87; Cl,
21.95. Found: C, 54.57; H, 4.74; N, 14.97; Cl, 21.87.
The Bill and Melinda Gates Foundation supported this work.
* To whom correspondence should be addressed. Phone: 404-651-3798. Fax: 404-651-1416. E-mail: dboykin@gsu.edu.
Georgia State University.
Swiss Tropical Institute.
1. (a)Tidwell, R. R.; Boykin, W. D. Dicationic DNA Minor Groove
Binders as Antimicrobial Agents. In Small Molecule DNA and
RNA Binders: From Synthesis to Nucleic Acid Complexes,
Demeunynck, M., Bailly, C., Wilson, W. D., Eds.; Wiley-VCH:
Weinheim, Germany, 2002; Vol. 2, pp 416-460. (b) Wilson, W.
D.; Nguyen, B.; Tanious, F. A.; Mathis, A.; Hall, J. E.; Stephens,
C. E.; Boykin, D. W. Dications That Target the DNA Minor
Groove: Compound Design and Preparation, DNA Interactions,
Cellular Distribution and Biological Activity. Curr. Med. Chem.
Anti-Cancer Agents 2005, 5, 389-408.
2. Ashley, J. N.; Barber, H. J.; Ewins, A. J.; Newbery, G.; Self, A.
D. H. Chemotherapeutic Comparison of the Trypanocidal Action
of Some Aromatic Diamidines. J. Chem. Soc. 1942, 103-106.
3. Fairlamb, A. H. Chemotherapy of Human African Trypanosomiasis: Current and Future Prospects. Trends Parasitol. 2003,
19, 488-494.
4. Bouteille, B.; Oukem, O.; Bisser, S.; Dumas, M. Treatment
Perspectives for Human African Trypanosomiasis. Fundam.
Clin. Pharmacol. 2003, 17, 171-181.
5. Yeramian, P. D.; Castagnini, L. A.;. Allen, J. L.; Umesh Lallo, U.; Gotuzzo, E. Efficacy and Safety of DB289, a New Oral Drug for Treatment of Pneumocystis carinii pneumonia (PCP) in AIDS Patients. Presented at the 43rd Annual Interscience Conference on Antimicrobial Agents and Chemotherapy Meeting, Chicago, IL, September 14-17, 2003.
6. Yeramian, P.; Krudsood, S.; Chalermrut, K.; Silachamroon, U.; Allen, J.; Brun, R.; Meshnick, S.; Tidwell, R.; Looareesuwan, S. Efficacy of DB289 in Acute Uncomplicated P. falciparum/P. vivax Malaria. Presented at the 52nd Annual Meeting of the American Society of Tropical Medicine and Hygiene, Philadelphia, PA, December 3-7, 2003.
7. Dykstra, C. C.; McClernon, D. R.; Elwell, L. P.; Tidwell, R. R.
Selective Inhibition of Topoisomerases from Pneumocystis carinii
Compared with That of Topoisomerases from Mammalian Cell.
Antimicrob. Agents Chemother. 1994, 38, 1890-1898.
8. Bailly, C.; Dassonneville, L.; Carrascol, C.; Lucasl, D.; Kumar,
A.; Boykin, D. W.; Wilson. W. D. Relationships between Topoisomerase II Inhibition, Sequence-Specificity and DNA Binding
Mode of Dicationic Diphenylfuran Derivatives. Anti-Cancer Drug
Des. 1999, 14, 47-60.
9. Fitzgerald, D. J.; Anderson, J. N. Selective Nucleosome Disruption by Drugs That Bind in the Minor Groove of DNA. J. Biol.
Chem. 1999, 274, 27128-27138.
10. Henderson, D.; Hurley, L. H. Molecular Struggle for Transcription Control. Nat. Med. 1995, 1, 525-527.
11. Goodsell, D.; Dickerson, R. E. Isohelical Analysis of DNA Groove-Binding Drugs. J. Med. Chem. 1986, 29, 727-733.
12. Cory, M.; Tidwell, R. R.; Fairley, T. A. Structure and DNA
Binding Activity of Analogues of 1,5-Bis(4-amidinophenoxy)pentane (Pentamidine). J. Med. Chem. 1992, 35, 431-438.
13. Brun, R.; Buhler, Y.; Sandmeier, U.; Kaminsky, R.; Bacchi, C.
J.; Rattendi, D.; Lane, S.; Croft, S. L.; Snowdon, D.; Yardley,
V.; Caravatti, G.; Frei, J.; Stanek, J.; Mett, H. In Vitro Trypanocidal Activities of New S-Adenosylmethionine Decarboxylase
Inhibitors. Antimicrob. Agents Chemother. 1996, 40, 1442-1447.
14. Nguyen, B.; Lee, M. P. H.; Hamelberg, D.; Joubert, A.; Bailly,
C.; Brun, R.; Neidle, S.; Wilson, D. W. Strong Binding in the
DNA Minor Groove by an Aromatic Diamidine with a Shape
That Does Not Match the Curvature of the Groove. J. Am. Chem.
Soc. 2002, 124, 13680-13681.
15. Nguyen, B.; Hamelberg, D.; Bailly, C.; Colson, P.; Stanek, J.;
Brun, R.; Neidle, S.; Wilson, D. W. Characterization of a Novel
DNA Minor-Groove Complex. Biophys. J. 2004, 86, 1028-1041.
16. Patrick, D. A.; Boykin, D. W.; Wilson, W. D.; Tanious, F. A.;
Spychala, J.; Bender, B. C.; Hall, J. E.; Dykstra, C. C.; Ohemeng,
K. A.; Tidwell, R. R. Anti-Pneumocystis carinii Pneumonia
Activity of Dicationic Carbazoles. Eur. J. Med. Chem. 1997, 32,
781-793.
17. Wang, S. H.; Hall, J. E.; Tanious, F. A.; Wilson, W. D.; Patrick,
D. A.; McCurdy, D. R.; Bender, B. C.; Tidwell, R. R. Dicationic
Dibenzofuran Derivatives as Anti-Pneumocystis Carinii Pneumonia Agents: Synthesis, DNA Binding Affinity, and Anti-PCP
Activity. Eur. J. Med. Chem. 1999, 34, 215-224.
18. Patrick, D. A.; Hall, J. E.; Bender, B. C.; McCurdy, D. R.; Wilson,
W. D.; Tanious, F. A.; Saha, S.; Tidwell, R. R. Synthesis and
Anti-Pneumocystis carinii Pneumonia Activity of Novel Dicationic Dibenzothiophenes and Orally Active Prodrugs. Eur. J.
Med. Chem. 1999, 34, 575-583.
19. Tanious, F. A.; Ding, D.; Patrick, D. A.; Tidwell, R. R.; Wilson,
W. D. A New Type of DNA Minor-Groove Complex: Carbazole
Dication-DNA Interactions. Biochemistry 1997, 36, 15315-15325.
20. Tanious, F. A.; Ding, D.; Patrick, D. A.; Bailly, C.; Tidwell, R.
R.; Wilson, W. D. Effects of Compound Structure on Carbazole
Dication-DNA Complexes: Tests of the Minor-Groove Complex
Models. Biochemistry 2000, 39, 12091-12101.
21. Stephens, C. E.; Tanious, F.; Kim, S.; Wilson, W. D.; Schell, W.
A.; Perfect, J. R.; Franzblau, S. G.; Boykin, D. W. Diguanidino
and "Reversed" Diamidino 2,5-Diarylfurans as Antimicrobial
Agents. J. Med. Chem. 2001, 44, 1741-1748.
22. Stephens, C. E.; Brun, R.; Salem, M. M.; Werbovetz, K. A.;
Tanious, F. A.; Wilson, W. D.; Boykin, D. W. The Activity of
Diguanidino and "Reversed" Diamidino 2,5-Diarylfurans versus
Trypanosoma cruzi and Leishmania donovani. Bioorg. Med.
Chem. Lett. 2003, 13, 2065-2069.
23. Dardonville, C.; Brun, R. Bisguanidine, Bi(2-aminoimidazoline),
and Polyamine Dervatives as Potent and Selective Chemotherapeutic Agents against Trypanosoma brucei rhodensiense. Synthesis and in Vitro Evauation. J. Med. Chem. 2004, 47, 2296-2307.
24. Oszczapowicz, J. In The Chemistry of Amidines and Imidates; Patai, S., Ed.; John Wiley & Sons: Chichester, U.K., 1991; Vol. 2, pp 623-688.
25. Yamamoto, Y.; Kojima, S. In The Chemistry of Amidines and Imidates; Patai, S., Ed.; John Wiley & Sons: Chichester, U.K., 1991; Vol. 2, pp 485-526.
26. Ettmayer, P.; Amidon, G. L.; Clement, B.; Testa, B. Lessons
Learned from Marketed and Investigational Prodrugs. J. Med.
Chem. 2004, 47, 2392-2404.
27. Clement, B. Reduction of N-Hydroxylated Compounds: Amidioximes (N-Hydroxyamidines) as Prodrugs of Amidines. Drug
Metab. Rev. 2002, 34, 565-579.
28. Ansede, J.; Anbazhagan, M.; Brun, R.; Easterbrook, J.; Hall, J.
E.; Boykin, D. W. O-Alkoxyamidine Prodrugs of Furamidine: In
Vitro Transport and Microsomal Metabolism as Indicators of in
Vivo Efficacy in a Mouse Model of Trypanosoma brucei rhodesiense Infection. J. Med. Chem. 2004, 47, 4335-4338.
29. Boykin, D. W.; Kumar, A.; Bender, B. C.; Hall, J. E.; Tidwell, R.
R. Anti-Pneumocystis Activity of Bis-amidoximes and Bis-O-alkylamidoximes Prodrugs. Bioorg. Med. Chem. Lett. 1996, 6,
3017-3020.
30. Hall, J. E.; Kerrigan, J. E.; Ramachandran, K.; Bender, B. C.;
Stanko, J. P.; Jones, S. K.; Patrick, D. A.; Tidwell, R. R. Anti-Pneumocystis Activity of Aromatic Diamidoxime Prodrugs.
Antimicrob. Agents Chemother. 1998, 42, 666-674.
31. Ismail, M. A.; Brun, R.; Easterbrook, J. D.; Tanious, F. A.;
Wilson, W. D.; Boykin, D. W. Synthesis and Anti-Protozoal
Activity of Aza-Analogues of Furamidine. J. Med. Chem. 2003,
46, 4761-4769.
32. Rahmathullah, S. M.; Hall, J. E.; Brender, B. C.; McCurdy, D.
R.; Tidwell, R. R.; Boykin, D. W. Prodrugs for Amidines:
Synthesis and Anti-Pneumocystis carinii Activity of Carbamates
of 2,5-Bis-[4-amidinophenyl]furan. J. Med. Chem. 1999, 42,
3994-4000.
33. Saulner, M. K.; Frennesson, D. B.; Deshpande, M. S.; Hansel,
S. B.; Vyas, D. M. An Efficient Method for Synthesis of
Guanidino Prodrugs. Bioorg. Med. Chem. Lett. 1994, 4, 1985-1990.
34. Schuster, A.; Bernhardt, G.; Buschauer, A. Determination of the
Apromidine-Type Histamine H2-Receptor Agonist N1-[3-(3,4-Difluorophenyl)-3-(2-pyridyl)propyl]-N2-[3-(1H-imidazol-4-yl)propyl]guanidine and Corresponding N3-Alkoxycarbonylguanidines
by HPLC and CE. Eur. J. Pharm. Sci. 1997, 5, 79-88.
35. Humphreys, W. G.; Obermeier, M. T.; Chong, S.; Kimball, S. D.;
Das, J.; Chen, P.; Moquin, R.; Han, W.-H.; Gedamke, R.; White,
R. E.; Morrison, R. A. Oxidative Activation of Acylguanidine
Prodrugs: Intestinal Presystemic Activation in Rats Limits
Absortion and Can Be Inhibited by Co-administration of Ketoconazole. Xenobiotica 2003, 33, 93-106.
36. Guan, J.; Zhang, Q.; Montip, G.; Karle, J. M.; Ditusa, C. A.;
Milhous, W. K.; Skillman, D. R.; Lin, A. J. Structure Identification and Prophylactic Antimalarial Efficacy of 2-Guanidinoimidazolidinedione Derivatives. Bioorg. Med. Chem. 2005, 13, 699-704.
37. Perry, P. J.; Read, M. A.; Davies, R. T.; Gowan, S. M.; Reszka,
A. P.; Wood, A. A.; Kelland, L. R.; Neidle, S. 2,7-Disubstituted
Amidofluorenone Derivatives as Inhibitors of Human Telomerase. J. Med. Chem. 1999, 42, 2679-2684.
38. Kim, K. S.; Qian, L. Improved Method for the Preparation of
Guanidines. Tetrahedron Lett. 1993, 34, 7677-7680.
39. Levallet, C.; Lerpiniere, J.; Ko, S. Y. The HgCl2-Promoted
Guanylation Reaction: The Scope and Limitations. Tetrahedron
1997, 53, 5291-5304.
40. Miel, H.; Rault, S. Conversion of N,N'-Bis(tert-butoxycarbonyl)guanidines to N-(N'-tert-Butoxycarbonylamidino)ureas. Tetrahedron Lett. 1998, 39, 1565-1568.
41. Atwal, K. S.; Ahmed, S. Z.; O'Reilly, B. C. A Facile Synthesis of
Cyanoguanidines from Thioureas. Tetrahedron Lett. 1989, 30,
7313-7316.
42. Atwal, K. S.; Grover, G. J.; Ferrara, F. N.; Ahmed, S. Z.; Sleph,
P. G.; Dzwonczyk, S.; Normandin, D. E. Cardioselective Antiischemic ATP-Sensitive Potassium Channel Openers. 2. Structure
Activity Studies on Benzopyranylcyanoguanidines: Modification
of the Benzopyran Ring. J. Med. Chem. 1995, 38, 1966-1973.
43. Linton, B. R.; Carr, A. J.; Orner, B. P.; Hamilton, A. D. A
Versatile One-Pot Synthesis of 1,3-Substituted Guanidines from
Carbamoyl Isothiocyanates. J. Org. Chem. 2000, 65, 1566-1568.
44. Smith, B. D.; Goodenough-Lashua, D. M.; D'Souza, C. J. E.;
Norton, K. J.; Schmidt, L. M.; Tung, J. C. Substituent Effects
on the Barrier to Carbamate C-N Rotation. Tetrahedron Lett.
2004, 45, 2747-2749.
45. Three rotational isomers are possible: syn-syn, syn-anti, and anti-anti. However, we see only two sets of NMR signals.
46. Gonzalez-Roman, J. L. Part I. Synthesis of N-Substituted 2,5-Bis-[4-gunidinophenyl]thiophenes as Potential Antileishmanial Compounds. Part II. Synthesis of Novel Potential Prodrugs of Bis-guanidino and Bis-amidino Molecules. Ph.D. Dissertation, Georgia State University, Atlanta, GA, 2002.
47. Shearer, B. G.; Oplinger, J. A.; Lee, S. S-2-Naphthylmethyl
Thioacetimidate Hydrobromide: A New Odorless Reagent for
the Mild Synthesis of Substituted Acetamidines. Tetrahedron
Lett. 1997, 38, 179-182.
a Buffer: MES10. Ratio compound/DNA is 0.3; see ref 22.b T.b.r. (Trypanosoma brucei rhodesiense) strain used was STIB900, and the P.f. (Plasmodium falciparum) strain was K1. Values are of duplicate determinations. See ref 31.c Cytotoxicity was evaluated using cultured L6 rat myoblast cells using the same assay procedure as for Trypanosoma brucei rhodesiense.
compd
A
X
Y
dosage for 4 daysb (mg/kg)
curesc
survivald (days)
pentamidine
20 ip
0/4
40.8
furamidine
20 ip
0/4
52.5
9a
NH(C=NH)NH2
nil
CH2
20 ip
0/4
6
11a
NH(C=NCO2Et)NH2
nil
CH2
100 po
0/4
18.75
12d
NH(C=NOMe)NH2
nil
CH2
100 po
0/4
8
12e
NH(C=NOiBu)NH2
nil
CH2
100 po
0/4
6.75
12a
NH(C=NH)NHMe
nil
CH2
20 ip
3/4
>52
5 ip
2/4
>45.5
11c
NH(C=NCO2Et)NHMe
nil
CH2
100 po
4/4
>60
25 po
2/4
>41.25
12b
NH(C=NH)NHEt
nil
CH2
20 ip
5/7e
>52.7
11d
NH(C=NCO2Et)NHEt
nil
CH2
100 po
0/4
>27.75
12c
NH(C=NH)NHiPr
nil
CH2
20 ip
4/4
>60
11e
NH(C=NCO2Et)NHiPr
nil
CH2
100 po
0/4
17.75
9b
NH(C=NH)NH2
nil
CO
10 ip
2/4
>50.75
5 ip
0/4
45
11b
NH(C=NCO2Et)NH2
nil
CO
100 po
0/4
6
9d
NH(C=NH)NH2
CH
N
20 ip
2/4
>54.5
5 ip
0/4
16.25
a See ref 31 for details of the STIB900 model. IC50 values for 13a, 13b, and 9c did not meet criteria for entry into animal studies.b ip = intraperitioneal and po = oral in 10% DMSO water.c Number of mice that survive and are parasite-free on day 60 postinfection.d Average days of survival; untreated control animals expire between days 7 and 8 postinfection.e In two different experiments, on the second day of dosing, one animal died.