A Novel Method for Building Regression Tree Models for QSAR Based on Artificial Ant Colony Systems

Sergei Izrailev* and Dimitris Agrafiotis
3-Dimensional Pharmaceuticals, Inc., 665 Stockton Drive, Exton, Pennsylvania 19341
J. Chem. Inf. Comput. Sci., 2001, 41 (1), pp 176–180
DOI: 10.1021/ci000336s
Publication Date (Web): November 1, 2000
Copyright © 2001 American Chemical Society
*

 To whom correspondence should be addressed. Phone:  (610) 458-5264, ext 6570. Fax:  (610) 458-8249. E-mail:  sergei@3dp.com.

Abstract

Among the multitude of learning algorithms that can be employed for deriving quantitative structure−activity relationships, regression trees have the advantage of being able to handle large data sets, dynamically perform the key feature selection, and yield readily interpretable models. A conventional method of building a regression tree model is recursive partitioning, a fast greedy algorithm that works well in many, but not all, cases. This work introduces a novel method of data partitioning based on artificial ants. This method is shown to perform better than recursive partitioning on three well-studied data sets.

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History

  • Published In Issue January 22, 2001
  • Received July 25, 2000

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