Coding and Ordering Kekulé Structures

Ante Miliević, Sonja Nikolić,* and N. Trinajstić
The Rugjer Bokovi Institute, P.O. Box 180, HR-10002 Zagreb, Croatia
J. Chem. Inf. Comput. Sci., 2004, 44 (2), pp 415–421
DOI: 10.1021/ci0304270
Publication Date (Web): February 13, 2004
Copyright © 2004 American Chemical Society

 Dedicated to Dr. George W. A. Milne, a former long-term Editor-in-Chief of this distinguished journal.

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 Corresponding author:  e-mail:  sonja@irb.hr.

Abstract

The concept of numerical Kekulé structures is used for coding and ordering geometrical (standard) Kekulé structures of several classes of polycyclic conjugated molecules:  catacondensed, pericondensed, and fully arenoid benzenoid hydrocarbons, thioarenoids, and [N]phenylenes. It is pointed out that the numerical Kekulé structures can be obtained for any class of polycyclic conjugated systems that possesses standard Kekulé structures. The reconstruction of standard Kekulé structures from the numerical ones is straightforward for catacondensed systems, but this is not so for pericondensed benzenoid hydrocarbons. In this latter case, one needs to use two codes to recover the geometrical Kekulé structures:  the Wiswesser code for the benzenoid and the numerical code for its Kekulé structure. There is an additional problem with pericondensed benzenoid hydrocarbons; there appear numerical Kekulé structures that correspond to two (or more) geometrical Kekulé structures. However, this problem can also be resolved.

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History

  • Published In Issue March 22, 2004
  • Received December 30, 2003

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