Representation of the Molecular Topology of Cyclical Structures by Means of Cycle Graphs. 3. Hierarchical Model of Screening of Chemical Databases

Irene Luque Ruiz,* Gonzalo Cerruela García, and Miguel Ángel Gómez-Nieto
Department of Computing and Numerical Analysis, University of Crdoba, Campus Universitario de Rabanales, Albert Einstein Building, E-14071 Crdoba, Spain
J. Chem. Inf. Comput. Sci., 2004, 44 (6), pp 1903–1911
DOI: 10.1021/ci049889j
Publication Date (Web): August 31, 2004
Copyright © 2004 American Chemical Society
*

 Corresponding author phone:  +34-957-21-2082; fax:  +34−957−21−8630; e-mail:  ma1lurui@uco.es.

Abstract

The increase in the size and complexity of chemical databases necessitates the proposal and development of efficient methods of classification and recovery of information, which supposes proposal of a model of classification of database records and the use of a compatible model of screening for inspection of clusters and recovery of the molecules that satisfy the search criterion. The cycle graphs model based on consideration of all the cycles and chains (and equivalent cycles and chains) present in the molecular structure has been proven appropriate for classification of chemical databases, giving rise to a generation of different classification levels depending on the structural elements (cycles and chains) that are considered. In this paper we propose a screening model, compatible with the cycle graphs model, based on a hierarchy of levels of abstraction. The set of molecules that satisfies a screening model (or selection criterion) diminishes as we advance in the hierarchy of levels of the model, which allows filtering of records and, therefore, an increase in the efficiency of the screening process. In the following work of this series we describe and validate the screening tool developed.

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History

  • Published In Issue November 22, 2004
  • Received March 30, 2004

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