Article

Binding or Bending: Distinction of Allosteric Abl Kinase Agonists from Antagonists by an NMR-Based Conformational Assay

Novartis Institutes for Biomedical Research, 4002 Basel, Switzerland
J. Am. Chem. Soc., 2010, 132 (20), pp 7043–7048
DOI: 10.1021/ja101837n
Publication Date (Web): May 7, 2010
Copyright © 2010 American Chemical Society

Abstract

Abstract Image

Allosteric inhibitors of Bcr-Abl have emerged as a novel therapeutic option for the treatment of CML. Using fragment-based screening, a search for novel Abl inhibitors that bind to the myristate pocket was carried out. Here we show that not all myristate ligands are functional inhibitors, but that the conformational state of C-terminal helix_I is a structural determinant for functional activity. We present an NMR-based conformational assay to monitor the conformation of this crucial helix_I and show that myristate ligands that bend helix_I are functional antagonists, whereas ligands that bind to the myristate pocket but do not induce this conformational change are kinase agonists. Activation of c-Abl by allosteric agonists has been confirmed in a biochemical assay.

Supporting Information


Titration curves for fragments 1 and 2, contour plots for Figure 3, synthesis of compounds 35, crystallographic data, and complete refs 6 and 19. This material is available free of charge via the Internet at http://pubs.acs.org. All of the crystal structures with fragments described in this paper have been deposited in the Protein Data Bank (PDB codes 3MS9 and 3MSS).

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Article Views: 2,223 Times
Received 4 March 2010
Published online 7 May 2010
Published in print 26 May 2010
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