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Article

Structure−Activity Relationships for a Class of Inhibitors of Purine Nucleoside Phosphorylase

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Victor Farutin,† Lori Masterson, Adriano D. Andricopulo, Jianming Cheng, Brad Riley, Ryan Hakimi, Jack W. Frazer, and Eugene H. Cordes*
College of Pharmacy and Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109
J. Med. Chem., 1999, 42 (13), pp 2422–2431
DOI: 10.1021/jm990037y
Publication Date (Web): June 10, 1999
Copyright © 1999 American Chemical Society
CASSection:
Pharmacology

Abstract

Abstract Image

Values of inhibition constants, Ki, for a family of structurally related, competitive inhibitors of calf spleen purine nucleoside phosphorylase (PNP) have been determined employing both inosine as substrate and a manual assay and 2-amino-6-mercapto-7-methylpurine ribonucleoside (MESG) as substrate and a robot-based enzyme kinetics facility. Several of the values determined robotically were confirmed employing the same substrate and a manual assay. Surprisingly, for many of the inhibitors examined, values of Ki determined with MESG as substrate are smaller than those obtained employing inosine as substrate by a factor that varies from less than 2 to 10. Values of concentrations required for 50% inhibition of PNP, IC50, have also been determined for the same family of inhibitors employing inosine as substrate. Values of IC50ino and those for Kiino and Kimesg for subsets of the inhibitors have been employed as training sets to create quantitative structure−activity relationships (QSAR) which have substantial power to predict values of IC50 and Ki for inhibitors outside the training set. These QSAR models should be useful in guiding future medicinal chemistry efforts designed to discover inhibitors of PNP having increased potency.

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Citing Articles

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This article has been cited by 4 ACS Journal articles (4 most recent appear below).

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    Discovery of New Inhibitors of Schistosoma mansoni PNP by Pharmacophore-Based Virtual Screening

    Matheus P. Postigo, Rafael V. C. Guido, Glaucius Oliva, Marcelo S. Castilho, Ivan da R. Pitta, Julianna F. C. de Albuquerque, and Adriano D. Andricopulo
    Journal of Chemical Information and Modeling2010 50 (9), 1693-1705
    • Discovery of New Inhibitors of Schistosoma mansoni PNP by Pharmacophore-Based Virtual Screening

      Matheus P. Postigo, Rafael V. C. Guido, Glaucius Oliva, Marcelo S. Castilho, Ivan da R. Pitta, Julianna F. C. de Albuquerque, and Adriano D. Andricopulo
      Journal of Chemical Information and Modeling2010 50 (9), 1693-1705

      Schistosomiasis is considered the second most important tropical parasitic disease, with severe socioeconomic consequences for millions of people worldwide. Schistosoma mansoni, one of the causative agents of human schistosomiasis, is unable to synthesize ...

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  • Cover Image

    Structural Basis for Selective Inhibition of Trypanosomatid Glyceraldehyde-3-Phosphate Dehydrogenase: Molecular Docking and 3D QSAR Studies

    Rafael V. C. Guido, Glaucius Oliva, Carlos A. Montanari and Adriano D. Andricopulo
    Journal of Chemical Information and Modeling2008 48 (4), 918-929
    • Structural Basis for Selective Inhibition of Trypanosomatid Glyceraldehyde-3-Phosphate Dehydrogenase: Molecular Docking and 3D QSAR Studies

      Rafael V. C. Guido, Glaucius Oliva, Carlos A. Montanari and Adriano D. Andricopulo
      Journal of Chemical Information and Modeling2008 48 (4), 918-929

      The glycolytic enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is as an attractive target for the development of novel antitrypanosomatid agents. In the present work, comparative molecular field analysis and comparative molecular similarity index ...

      Abstract | HTMLFull Text HTML | PDFHi-Res PDF | PDFPDF w/ Links
  • Cover Image

    Information Decay in Molecular Docking Screens against Holo, Apo, and Modeled Conformations of Enzymes

    Susan L. McGovern and Brian K. Shoichet
    Journal of Medicinal Chemistry2003 46 (14), 2895-2907
    • Information Decay in Molecular Docking Screens against Holo, Apo, and Modeled Conformations of Enzymes

      Susan L. McGovern and Brian K. Shoichet
      Journal of Medicinal Chemistry2003 46 (14), 2895-2907

      Molecular docking uses the three-dimensional structure of a receptor to screen a small molecule database for potential ligands. The dependence of docking screens on the conformation of the binding site remains an open question. To evaluate the information ...

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  • Cover Image

    Stochastic Similarity Selections from Large Combinatorial Libraries

    Victor S. Lobanov and Dimitris K. Agrafiotis
    Journal of Chemical Information and Computer Sciences2000 40 (2), 460-470
    • Stochastic Similarity Selections from Large Combinatorial Libraries

      Victor S. Lobanov and Dimitris K. Agrafiotis
      Journal of Chemical Information and Computer Sciences2000 40 (2), 460-470

      A stochastic procedure for similarity searching in large virtual combinatorial libraries is presented. The method avoids explicit enumeration and calculation of descriptors for every virtual compound, yet provides an optimal or nearly optimal similarity ...

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  • Published In Issue July 01, 1999
  • Received January 22, 1999

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  • Victor Farutin
  • Lori Masterson
  • Adriano D. Andricopulo
  • Jianming Cheng
  • Brad Riley
  • Ryan Hakimi
  • Jack W. Frazer
  • Eugene H. Cordes
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