NMR Solvent Shifts of Adenine in Aqueous Solution from Hybrid QM/MM Molecular Dynamics Simulations

Sittipong Komin, Christian Gossens, Ivano Tavernelli, Ursula Rothlisberger, and Daniel Sebastiani*
Max-Planck-Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany, and Institut des Sciences et Ingnierie Chimiques, Ecoles Polytechnique Fdrale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
J. Phys. Chem. B, 2007, 111 (19), pp 5225–5232
DOI: 10.1021/jp067263l
Publication Date (Web): April 26, 2007
Copyright © 2007 American Chemical Society

 Max-Planck-Institute for Polymer Research.

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 EPFL.

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*

 Corresponding author. Fax:  +49-6131-379-100. E-mail:  sebastia@mpip-mainz.mpg.de.

Abstract

We present first principles calculations of the NMR solvent shift of adenine in aqueous solution. The calculations are based on snapshots sampled from a molecular dynamics simulation, which were obtained via a hybrid quantum-mechanical/mechanical modeling approach, using an all-atom force field (TIP3P). We find that the solvation via the strongly fluctuating hydrogen bond network of water leads to nontrivial changes in the NMR spectra of the solutes regarding the ordering of the resonance lines. Although there are still sizable deviations from experiment, the overall agreement is satisfactory for the 1H and 15N NMR shifts. Our work is another step toward a realistic first-principles prediction of NMR chemical shifts in complex chemical environments.

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History

  • Published In Issue May 17, 2007
  • Received November 3, 2006
    Revised March 8, 2007

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