Article
Anionic and Neutral Complexes of Uracil and Water
Purchase the full-text
- PDF/HTML,
figures/images,
references and tables,
(where available)
Abstract
Several isomeric structures of the uracil−water complex and its covalent-bound anion were calculated ab initio with second-order, many-body, perturbation theory and the 6-311++G** basis set. In all neutral complexes, water forms two hydrogen bonds with uracil. In each of the conventional anionic forms, a single, but stronger and shorter, hydrogen bond is found. All complexes are nonplanar, but ring-puckering is less pronounced in neutrals than in anions. Several isomers of the anionic uracil−water complex have positive adiabatic electron-detachment energies. The existence of multiple anionic isomers with vertical electron-detachment energies between 0.30 and 0.90 eV accounts for the broad photoelectron spectrum. The lowest unoccupied molecular orbital of the neutral complex at the geometry of the anionic complex provides a simple explanation for the structural and energetic consequences of electron attachment.
Citing Articles
Citation data is made available by participants in CrossRef's Cited-by Linking service. For a more comprehensive list of citations to this article, users are encouraged to perform a search in SciFinder.
This article has been cited by 30 ACS Journal articles (5 most recent appear below).

Electron Attachment to the Cytosine-Centered DNA Single Strands: Does Base Stacking Matter?
Jiande Gu, Jing Wang, and Jerzy LeszczynskiThe Journal of Physical Chemistry B2012 116 (4), 1458-1466Electron Attachment to the Cytosine-Centered DNA Single Strands: Does Base Stacking Matter?
Jiande Gu, Jing Wang, and Jerzy LeszczynskiThe Journal of Physical Chemistry B2012 116 (4), 1458-1466Electron attachment to the trimer of nucleotide, dGpdCpdG, has been investigated by a quantum mechanical approach at a reliable level of theory. The study of the electron attached dGpdCpdG species demonstrates that cytosine contained DNA single strands ...

Structures of Hydrated Li+−Thymine and Li+−Uracil Complexes by IRMPD Spectroscopy in the N−H/O−H Stretching Region
Elizabeth A. L. Gillis, Khadijeh Rajabi and Travis D. FridgenThe Journal of Physical Chemistry A2009 113 (5), 824-832Structures of Hydrated Li+−Thymine and Li+−Uracil Complexes by IRMPD Spectroscopy in the N−H/O−H Stretching Region
Elizabeth A. L. Gillis, Khadijeh Rajabi and Travis D. FridgenThe Journal of Physical Chemistry A2009 113 (5), 824-832The interaction of lithium ions with two pyrimidine nucleobases, thymine and uracil, as well as the solvation of various complexes by one and two water molecules, has been studied in the gas phase. IRMPD spectra are reported for each of B−Li+−(H2O)n (n = ...

Computational Study of Thymine Dimer Radical Anion Splitting in the Self-Repair Process of Duplex DNA
Fanny Masson, Teodoro Laino, Ivano Tavernelli, Ursula Rothlisberger, and Jürg HutterJournal of the American Chemical Society2008 130 (11), 3443-3450Computational Study of Thymine Dimer Radical Anion Splitting in the Self-Repair Process of Duplex DNA
Fanny Masson, Teodoro Laino, Ivano Tavernelli, Ursula Rothlisberger, and Jürg HutterJournal of the American Chemical Society2008 130 (11), 3443-3450Formation of the thymine dimer is one of the most important types of photochemical damage in DNA, responsible for several biological pathologies. Though specifically designed proteins (photolyases) can efficiently repair this type of damage in living ...

Microsolvation Pattern of the Hydrated Radical Anion of Uracil: U-(H2O)n (n = 3−5)
Xiaoguang Bao, Guoming Liang, Ning-Bew Wong, and Jiande GuThe Journal of Physical Chemistry A2007 111 (4), 666-672Microsolvation Pattern of the Hydrated Radical Anion of Uracil: U-(H2O)n (n = 3−5)
Xiaoguang Bao, Guoming Liang, Ning-Bew Wong, and Jiande GuThe Journal of Physical Chemistry A2007 111 (4), 666-672The microsolvation patterns of the uracil radical anion in water clusters U-(H2O)n with n ranging from 3 to 5 were investigated by the density functional theory approach. The electron detachment energies (VDE) of the stable anionic complexes with ...

Understanding Electron Attachment to the DNA Double Helix: The Thymidine Monophosphate−Adenine Pair in the Gas Phase and Aqueous Solution
Jiande Gu, Yaoming Xie, and Henry F. Schaefer IIIThe Journal of Physical Chemistry B2006 110 (39), 19696-19703Understanding Electron Attachment to the DNA Double Helix: The Thymidine Monophosphate−Adenine Pair in the Gas Phase and Aqueous Solution
Jiande Gu, Yaoming Xie, and Henry F. Schaefer IIIThe Journal of Physical Chemistry B2006 110 (39), 19696-19703Electron attachment to the 2‘-deoxythymidine-5‘-monophosphate-adenine pairs (5‘-dTMPH−A and 5‘-dTMP-−A) has been investigated at a carefully calibrated level of theory (B3LYP/DZP++) to investigate the electron-accepting properties of thymine (T) in the ...
Tools
-
Add to Favorites
-
Download Citation
-
Email a Colleague -
Permalink
Order Reprints
Rights & Permissions
Citation Alerts
History
- Published In Issue September 30, 1999
- Received June 14, 1999
Cart

ACS
Network






