Protein Disorder Is Positively Correlated with Gene Expression in Escherichia coli

Oleg Paliy*, Shawn M. Gargac, Yugong Cheng, Vladimir N. Uversky§ and A. Keith Dunker
Department of Biochemistry and Molecular Biology, Wright State University, Dayton, Ohio 45435, Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202, and Institute for Biological Instrumentation, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia
J. Proteome Res., 2008, 7 (6), pp 2234–2245
DOI: 10.1021/pr800055r
Publication Date (Web): May 9, 2008
Copyright © 2008 American Chemical Society
* Corresponding author. Address for correspondence: 260 Diggs Lab, Wright State University, 3640 Col. Glenn Hwy, Dayton, OH 45435. Fax (937) 775-3730, e-mail: oleg.paliy@wright.edu.
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Wright State University.

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Indiana University School of Medicine.

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Russian Academy of Sciences.

Abstract

Abstract Image

We considered, on a global scale, the relationship between the predicted fraction of protein disorder and the RNA and protein expression in Escherichia coli. Fraction of protein disorder correlated positively with both measured RNA expression levels of E. coli genes in three different growth media and with predicted abundance levels of E. coli proteins. Though weak, the correlation was highly significant. Correlation of protein disorder with RNA expression did not depend on the growth rate of E. coli cultures and was not caused by a small subset of genes showing exceptionally high concordance in their disorder and expression levels. Global analysis was complemented by detailed consideration of several groups of proteins.

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History

  • Published In Issue June 06, 2008
  • Article ASAPMay 09, 2008
  • Received: September 27, 2007

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