TOPPView: An Open-Source Viewer for Mass Spectrometry Data

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Abstract

Visualization of complex mass spectrometric data sets is becoming increasingly important in proteomics and metabolomics. We present TOPPView, an integrated data visualization and analysis tool for mass spectrometric data sets. TOPPView allows the visualization and comparison of individual mass spectra, two-dimensional LC-MS data sets and their accompanying metadata. By supporting standardized XML-based data exchange formats, data import is possible from any type of mass spectrometer. The integrated analysis tools of the OpenMS Proteomics Pipeline (TOPP) allow efficient data analysis from within TOPPView through a convenient graphical user interface. TOPPView runs on all major operating systems and is available free of charge under an open-source license at http://www.openms.de.

Keywords:

mass spectrometry; viewer; visualization; proteomics; metabolomics

Citing Articles

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This article has been cited by 2 ACS Journal articles (2 most recent appear below).

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  PeakML/mzMatch: A File Format, Java Library, R Library, and Tool-Chain for Mass Spectrometry Data Analysis

  Richard A. Scheltema, Andris Jankevics, Ritsert C. Jansen, Morris A. Swertz, and Rainer Breitling
  Analytical Chemistry2011 83 (7), 2786-2793

  • PeakML/mzMatch: A File Format, Java Library, R Library, and Tool-Chain for Mass Spectrometry Data Analysis

    Richard A. Scheltema, Andris Jankevics, Ritsert C. Jansen, Morris A. Swertz, and Rainer Breitling
    Analytical Chemistry2011 83 (7), 2786-2793

    The recent proliferation of high-resolution mass spectrometers has generated a wealth of new data analysis methods. However, flexible integration of these methods into configurations best suited to the research question is hampered by heterogeneous file ...

    Abstract | Full Text HTML | Hi-Res PDF | PDF w/ Links
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  mMass 3: A Cross-Platform Software Environment for Precise Analysis of Mass Spectrometric Data

  Martin Strohalm, Daniel Kavan, Petr Novák, Michael Volný and Vladimír Havlíček
  Analytical Chemistry2010 82 (11), 4648-4651

  • mMass 3: A Cross-Platform Software Environment for Precise Analysis of Mass Spectrometric Data

    Martin Strohalm, Daniel Kavan, Petr Novák, Michael Volný and Vladimír Havlíček
    Analytical Chemistry2010 82 (11), 4648-4651

    While tools for the automated analysis of MS and LC-MS/MS data are continuously improving, it is still often the case that at the end of an experiment, the mass spectrometrist will spend time carefully examining individual spectra. Current software ...

    Abstract | Full Text HTML | Hi-Res PDF | PDF w/ Links

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