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Energy–Geometry Dependency of Molecular Structures: A Multistep Machine Learning Approach

Cite this: ACS Comb. Sci. 2019, 21, 9, 614–621
Publication Date (Web):August 7, 2019
https://doi.org/10.1021/acscombsci.9b00028
Copyright © 2019 American Chemical Society

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    Abstract

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    There is growing interest in estimating quantum observables while circumventing expensive computational overhead for facile in silico materials screening. Machine learning (ML) methods are implemented to perform such calculations in shorter times. Here, we introduce a multistep method based on machine learning algorithms to estimate total energy on the basis of spatial coordinates and charges for various chemical structures, including organic molecules, inorganic molecules, and ions. This method quickly calculates total energy with 0.76 au in root-mean-square error (RMSE) and 1.5% in mean absolute percent error (MAPE) when tested on a database of optimized and unoptimized structures. Using similar molecular representations, experimental thermochemical properties were estimated, with MAPE as low as 6% and RMSE of 8 cal/mol·K for heat capacity in a 10-fold cross-validation.

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    The Supporting Information is available free of charge on the ACS Publications website at DOI: 10.1021/acscombsci.9b00028.

    • Variable description tables, principle component analysis, variable selection, stepwise improvement vs single step benchmark, stepwise improvement with various models at each step, performance improvement with increase in database size, ROC plots for classification of unoptimized structures, histogram plots and distribution parameters, model performance on thermochemical properties, and elemental frequency in the database (PDF)

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    Cited By

    This article is cited by 2 publications.

    1. Guomeng Xing, Li Liang, Chenglong Deng, Yi Hua, Xingye Chen, Yan Yang, Haichun Liu, Tao Lu, Yadong Chen, Yanmin Zhang. Activity Prediction of Small Molecule Inhibitors for Antirheumatoid Arthritis Targets Based on Artificial Intelligence. ACS Combinatorial Science 2020, 22 (12) , 873-886. https://doi.org/10.1021/acscombsci.0c00169
    2. Maryam Pardakhti, Pariksheet Nanda, Ranjan Srivastava. Impact of Chemical Features on Methane Adsorption by Porous Materials at Varying Pressures. The Journal of Physical Chemistry C 2020, 124 (8) , 4534-4544. https://doi.org/10.1021/acs.jpcc.9b09319

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