Table of Contents

March 27, 2007
Volume 46, Issue 12
Pages 3595-3932

About the Cover: Structural model of the SARS Coronavirus Spike protein transmembrane domain, as modeled by molecular dynamics simulation in a hydrated lipid bilayer. The red trimeric helical bundle is embedded in the lipid bilayer with the aqueous environment seen above and below the membrane. The glycine residues forming the GxxxG motif are shown in ball and stick representation. The GxxxG motif is one of the driving forces behind the trimerization of the SARS Spike protein and as such is the first example of a GxxxG motif participating in trimerization of helical bundles. [Arbely, E., et al. (2006) Biochemistry 45, 11349-11356.] View the article.

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CURRENT TOPICS

Cdc25 Phosphatases: Structure, Specificity, and Mechanism

pp 3595–3604
Publication Date (Web): March 01, 2007 (Current Topics/Perspectives)
DOI: 10.1021/bi700026j

ARTICLES

Peripherin-2: An Intracellular Analogy to Viral Fusion Proteins

pp 3605–3613
Publication Date (Web): February 27, 2007 (Article)
DOI: 10.1021/bi061820c

Structure of the Redox Sensor Domain of Azotobacter vinelandii NifL at Atomic Resolution: Signaling, Dimerization, and Mechanism,

pp 3614–3623
Publication Date (Web): February 24, 2007 (Article)
DOI: 10.1021/bi0620407

Reconciling the Solution and X-ray Structures of the Villin Headpiece Helical Subdomain: Molecular Dynamics Simulations and Double Mutant Cycles Reveal a Stabilizing Cation−π Interaction

pp 3624–3634
Publication Date (Web): March 06, 2007 (Article)
DOI: 10.1021/bi061785+

Solution Structure of the Rhodobacter sphaeroides PufX Membrane Protein: Implications for the Quinone Exchange and Protein−Protein Interactions,

pp 3635–3642
Publication Date (Web): March 03, 2007 (Article)
DOI: 10.1021/bi0618060

Molecular Dynamics Simulations of Inwardly Rectifying (Kir) Potassium Channels: A Comparative Study

pp 3643–3652
Publication Date (Web): February 28, 2007 (Article)
DOI: 10.1021/bi062210f

Solution Structure and Cell Selectivity of Piscidin 1 and Its Analogues,

pp 3653–3663
Publication Date (Web): March 01, 2007 (Article)
DOI: 10.1021/bi062233u

Characterization of the Denatured Structure of Pyrrolidone Carboxyl Peptidase from a Hyperthermophile under Nondenaturing Conditions: Role of the C-Terminal α-Helix of the Protein in Folding and Stability,

pp 3664–3672
Publication Date (Web): February 20, 2007 (Article)
DOI: 10.1021/bi602456y

Resonance Raman Spectroscopic Investigation of the Light-Harvesting Chromophore in Escherichia coli Photolyase and Vibrio cholerae Cryptochrome-1

pp 3673–3681
Publication Date (Web): February 23, 2007 (Article)
DOI: 10.1021/bi602385j

Mechanism for Cyclization Reaction by Clavaminic Acid Synthase. Insights from Modeling Studies

pp 3682–3691
Publication Date (Web): February 27, 2007 (Article)
DOI: 10.1021/bi602458m

Conservative and Nonconservative Mutations of the Transmembrane CPC Motif in ZntA: Effect on Metal Selectivity and Activity

pp 3692–3703
Publication Date (Web): February 28, 2007 (Article)
DOI: 10.1021/bi0616394

A Quantum Mechanics/Molecular Mechanics Study of the Catalytic Mechanism of the Thymidylate Synthase

pp 3704–3713
Publication Date (Web): March 01, 2007 (Article)
DOI: 10.1021/bi061953y

Ribozyme-Catalyzed Dipeptide Synthesis in Monovalent Metal Ions Alone

pp 3714–3723
Publication Date (Web): March 02, 2007 (Article)
DOI: 10.1021/bi061995m

Differentiation of Secreted and Membrane-Type Matrix Metalloproteinase Activities Based on Substitutions and Interruptions of Triple-Helical Sequences

pp 3724–3733
Publication Date (Web): March 06, 2007 (Article)
DOI: 10.1021/bi062199j

In Vitro Ligation of Oligodeoxynucleotides Containing C8-Oxidized Purine Lesions Using Bacteriophage T4 DNA Ligase

pp 3734–3744
Publication Date (Web): February 27, 2007 (Article)
DOI: 10.1021/bi062214k

Role of Protons in the Thermodynamic Contribution of a Zn(II)-Cys4 Site toward Metalloprotein Stability

pp 3745–3758
Publication Date (Web): February 28, 2007 (Article)
DOI: 10.1021/bi062253w

A Retro-Evolution Study of CDP-6-deoxy-d-glycero-l-threo-4-hexulose-3-dehydrase (E1) from Yersinia pseudotuberculosis: Implications for C-3 Deoxygenation in the Biosynthesis of 3,6-Dideoxyhexoses

pp 3759–3767
Publication Date (Web): February 27, 2007 (Article)
DOI: 10.1021/bi602352g

Mutagenic Analysis of an Invariant Aspartate Residue in Chorismate Synthase Supports Its Role as an Active Site Base

pp 3768–3774
Publication Date (Web): February 28, 2007 (Article)
DOI: 10.1021/bi602420u

Improved Green and Blue Fluorescent Proteins for Expression in Bacteria and Mammalian Cells,

pp 3775–3783
Publication Date (Web): February 27, 2007 (Article)
DOI: 10.1021/bi0622874

The QM/MM Molecular Dynamics and Free Energy Simulations of the Acylation Reaction Catalyzed by the Serine-Carboxyl Peptidase Kumamolisin-As

pp 3784–3792
Publication Date (Web): February 28, 2007 (Article)
DOI: 10.1021/bi061737p

Inhibition of Lipid A Biosynthesis as the Primary Mechanism of CHIR-090 Antibiotic Activity in Escherichia coli

pp 3793–3802
Publication Date (Web): March 03, 2007 (Article)
DOI: 10.1021/bi6025165

Speeding Up Proton Transfer in a Fast Enzyme: Kinetic and Crystallographic Studies on the Effect of Hydrophobic Amino Acid Substitutions in the Active Site of Human Carbonic Anhydrase II

pp 3803–3813
Publication Date (Web): March 02, 2007 (Article)
DOI: 10.1021/bi602620k

Use of Damaged DNA and dNTP Substrates by the Error-Prone DNA Polymerase X from African Swine Fever Virus

pp 3814–3825
Publication Date (Web): March 03, 2007 (Article)
DOI: 10.1021/bi061501l

Efficient Ligation of the Schistosoma Hammerhead Ribozyme

pp 3826–3834
Publication Date (Web): February 24, 2007 (Article)
DOI: 10.1021/bi062077r

Magnesium Promotes Structural Integrity and Conformational Switching Action of a Calcium Sensor Protein

pp 3835–3845
Publication Date (Web): February 22, 2007 (Article)
DOI: 10.1021/bi0621260

Singlet and Triplet State Transitions of Carotenoids in the Antenna Complexes of Higher-Plant Photosystem I

pp 3846–3855
Publication Date (Web): February 28, 2007 (Article)
DOI: 10.1021/bi602531k

Granular Tau Oligomers as Intermediates of Tau Filaments

pp 3856–3861
Publication Date (Web): March 06, 2007 (Article)
DOI: 10.1021/bi061359o

Calcium-Dependent Association of Calmodulin with the C-Terminal Domain of the Tetraspanin Protein Peripherin/rds

pp 3862–3871
Publication Date (Web): February 27, 2007 (Article)
DOI: 10.1021/bi061999r

Pre-steady-State Currents in Neutral Amino Acid Transporters Induced by Photolysis of a New Caged Alanine Derivative

pp 3872–3880
Publication Date (Web): February 21, 2007 (Article)
DOI: 10.1021/bi0620860

Facilitation of Quantal Release Induced by a D1-like Receptor on Bovine Chromaffin Cells

pp 3881–3887
Publication Date (Web): March 06, 2007 (Article)
DOI: 10.1021/bi602661p

A Fluorescence Spectroscopy Study on the Interactions of the TAT-PTD Peptide with Model Lipid Membranes

pp 3888–3895
Publication Date (Web): March 06, 2007 (Article)
DOI: 10.1021/bi602527t

Apolipoprotein A-V Interaction with Members of the Low Density Lipoprotein Receptor Gene Family

pp 3896–3904
Publication Date (Web): February 28, 2007 (Article)
DOI: 10.1021/bi7000533

Kinetic Manifestation of Processivity during Multiple Methylations Catalyzed by SET Domain Protein Methyltransferases

pp 3905–3915
Publication Date (Web): March 06, 2007 (Article)
DOI: 10.1021/bi6023644

A Two-Base Mechanism for Escherichia coli ADP-l-glycero-d-manno-Heptose 6-Epimerase

pp 3916–3924
Publication Date (Web): February 23, 2007 (Article)
DOI: 10.1021/bi602641m

Pathway of Oxidative Folding of Bovine α-Interferon: Predominance of Native Disulfide-Bonded Folding Intermediates

pp 3925–3932
Publication Date (Web): March 01, 2007 (Article)
DOI: 10.1021/bi0623126
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