Biochemistry: Volume 46, Issue 18 (ACS Publications)

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May 8, 2007

Volume 46, Issue 18

Pages 5283-5622

About the Cover: Structure of pyocyanin biosynthetic protein PhzM from Pseudomonas aeruginosa: (left) the PhzM dimer with one subunit colored gray and one rainbow and (right) the PhzM monomer, separated by domain. PhzM is a methyltransferase that acts together with PhzS, a flavin-dependent hydroxylase, to produce pyocyanin from phenazine-1-carboxylic acid. Pyocyanin is one of many virulence factors associated with P. aeruginosa, and it is responsible for the characteristic blue color associated with P. aeruginosa. [Parsons, J. F., et al. (2007) Biochemistry 46, 1821-1828.] View the article.

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CURRENT TOPICS

Protein-Derived Cofactors. Expanding the Scope of Post-Translational Modifications

Victor L. Davidson

pp 5283–5292

Publication Date (Web): April 17, 2007 (Current Topics/Perspectives)

DOI: 10.1021/bi700468t

ARTICLES

Purification and Characterization of the Fe^II- and α-Ketoglutarate-Dependent Xanthine Hydroxylase from Aspergillus nidulans

Gabriela M. Montero-Morán, Meng Li, Erika Rendòn-Huerta, Fabrice Jourdan, David J. Lowe, Andrew W. Stumpff-Kane, Michael Feig, Claudio Scazzocchio, and Robert P. Hausinger

pp 5293–5304

Publication Date (Web): April 13, 2007 (Article)

DOI: 10.1021/bi700065h

Abstract | Supporting Info

Lesion Specificity in the Base Excision Repair Enzyme hNeil1: Modeling and Dynamics Studies

Lei Jia, Vladimir Shafirovich, Nicholas E. Geacintov, and Suse Broyde

pp 5305–5314

Publication Date (Web): April 14, 2007 (Article)

DOI: 10.1021/bi062269m

Abstract | Supporting Info

NMR Studies of Interactions between C-Terminal Tail of Kir2.1 Channel and PDZ1,2 Domains of PSD95

Scott Pegan, Joshua Tan, Alan Huang, Paul A. Slesinger, Roland Riek, and Senyon Choe

pp 5315–5322

Publication Date (Web): April 17, 2007 (Article)

DOI: 10.1021/bi062228q

High-Stability Semiquinone Intermediate in Nitrate Reductase A (NarGHI) from Escherichia coli Is Located in a Quinol Oxidation Site Close to Heme b_D

Pascal Lanciano, Axel Magalon, Patrick Bertrand, Bruno Guigliarelli, and Stéphane Grimaldi

pp 5323–5329

Publication Date (Web): April 18, 2007 (Article)

DOI: 10.1021/bi700074y

Regulation of Photoactivation in Vertebrate Short Wavelength Visual Pigments: Protonation of the Retinylidene Schiff Base and a Counterion Switch

Lavoisier S. Ramos, Min-Hsuan Chen, Barry E. Knox, and Robert R. Birge

pp 5330–5340

Publication Date (Web): April 18, 2007 (Article)

DOI: 10.1021/bi700138g

Prenylation of Ras Facilitates hSOS1-Promoted Nucleotide Exchange, upon Ras Binding to the Regulatory Site

Markos Pechlivanis, Rieke Ringel, Boriana Popkirova, and Juergen Kuhlmann

pp 5341–5348

Publication Date (Web): April 17, 2007 (Article)

DOI: 10.1021/bi602353k

Abstract | Supporting Info

Dynamics of Light-Induced Conformational Changes of the Phoborhodopsin/Transducer Complex Formed in the n-Dodecyl β-d-Maltoside Micelle

Yukinori Taniguchi, Tatsuya Ikehara, Naoki Kamo, Hiroshi Yamasaki, and Yoshinori Toyoshima

pp 5349–5357

Publication Date (Web): April 14, 2007 (Article)

DOI: 10.1021/bi602482s

Revealing the Molecular Determinants of Neurotoxin Specificity for Calcium-Activated versus Voltage-Dependent Potassium Channels

Kathleen M. Giangiacomo, Jennifer Becker, Christopher Garsky, John P. Felix, Birgit T. Priest, William Schmalhofer, Maria L. Garcia, and Theodore J. Mullmann

pp 5358–5364

Publication Date (Web): April 18, 2007 (Article)

DOI: 10.1021/bi700150t

FTIR Study of the Retinal Schiff Base and Internal Water Molecules of Proteorhodopsin

Daisuke Ikeda, Yuji Furutani, and Hideki Kandori

pp 5365–5373

Publication Date (Web): April 12, 2007 (Article)

DOI: 10.1021/bi700143g

Improved Chemical Synthesis and Demonstration of the Relaxin Receptor Binding Affinity and Biological Activity of Mouse Relaxin

Chrishan S. Samuel, Feng Lin, Mohammed Akhter Hossain, Chongxin Zhao, Tania Ferraro, Ross A. D. Bathgate, Geoffrey W. Tregear, and John D. Wade

pp 5374–5381

Publication Date (Web): April 11, 2007 (Article)

DOI: 10.1021/bi700238h

Selenoglutathione: Efficient Oxidative Protein Folding by a Diselenide

Joris Beld, Kenneth J. Woycechowsky, and Donald Hilvert

pp 5382–5390

Publication Date (Web): April 10, 2007 (Article)

DOI: 10.1021/bi700124p

Abstract | Supporting Info

Role of α-Asp¹⁸¹, β-Asp¹⁹², and γ-Asp¹⁹⁰ in the Distinctive Subunits of Human NAD-Specific Isocitrate Dehydrogenase

Krzysztof P. Bzymek and Roberta F. Colman

pp 5391–5397

Publication Date (Web): April 14, 2007 (Article)

DOI: 10.1021/bi700061t

Analysis of the Gastric H,K ATPase for Ion Pathways and Inhibitor Binding Sites

Keith Munson, Richard J. Law, and George Sachs

pp 5398–5417

Publication Date (Web): April 11, 2007 (Article)

DOI: 10.1021/bi062305h

Interaction of the Fibronectin COOH-Terminal Fib-2 Regions with Fibrin: Further Characterization and Localization of the Fib-2-Binding Sites

Evgeny Makogonenko, Kenneth C. Ingham, and Leonid Medved

pp 5418–5426

Publication Date (Web): April 11, 2007 (Article)

DOI: 10.1021/bi7001373

Kinetic Mechanism of Ligand Binding in Human Ileal Bile Acid Binding Protein as Determined by Stopped-Flow Fluorescence Analysis

Orsolya Toke, John D. Monsey, and David P. Cistola

pp 5427–5436

Publication Date (Web): April 14, 2007 (Article)

DOI: 10.1021/bi700030r

Kinetic and Spectroscopic Characterization of Type II Isopentenyl Diphosphate Isomerase from Thermus thermophilus: Evidence for Formation of Substrate-Induced Flavin Species

Steven C. Rothman, Travis R. Helm, and C. Dale Poulter

pp 5437–5445

Publication Date (Web): April 12, 2007 (Article)

DOI: 10.1021/bi0616347

Abstract | Supporting Info

Structural Evidence for a Ligand Coordination Switch in Liver Alcohol Dehydrogenase

Rob Meijers, Hans-Werner Adolph, Zbigniew Dauter, Keith S. Wilson, Victor S. Lamzin, and Eila S. Cedergren-Zeppezauer

pp 5446–5454

Publication Date (Web): April 13, 2007 (Article)

DOI: 10.1021/bi6023594

Abstract | Supporting Info

The Linker between SH2 and Kinase Domains Positively Regulates Catalysis of the Tec Family Kinases

Raji E. Joseph, Lie Min, and Amy H. Andreotti

pp 5455–5462

Publication Date (Web): April 11, 2007 (Article)

DOI: 10.1021/bi602512e

Abstract | Supporting Info

A Unified Kinetic Mechanism Applicable to Multiple DNA Polymerases^,

Marina Bakhtina, Michelle P. Roettger, Sandeep Kumar, and Ming-Daw Tsai

pp 5463–5472

Publication Date (Web): April 10, 2007 (Article)

DOI: 10.1021/bi700084w

The Structure of Testis Angiotensin-Converting Enzyme in Complex with the C Domain-Specific Inhibitor RXPA380^,

Hazel R. Corradi, Itai Chitapi, B. Trevor Sewell, Dimitris Georgiadis, Vincent Dive, Edward D. Sturrock, and K. Ravi Acharya

pp 5473–5478

Publication Date (Web): April 18, 2007 (Article)

DOI: 10.1021/bi700275e

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Coumarin-Caged Glycine that Can Be Photolyzed within 3 μs by Visible Light

Vishakha R. Shembekar, Yongli Chen, Barry K. Carpenter, and George P. Hess

pp 5479–5484

Publication Date (Web): April 11, 2007 (Article)

DOI: 10.1021/bi700280e

Oxidative Folding and N-Terminal Cyclization of Onconase

Ervin Welker, Laura Hathaway, Guoqiang Xu, Mahesh Narayan, Lovy Pradeep, Hang-Cheol Shin, and Harold A. Scheraga

pp 5485–5493

Publication Date (Web): April 18, 2007 (Article)

DOI: 10.1021/bi602495a

Green Fluorescent Protein Ground States: The Influence of a Second Protonation Site near the Chromophore^,

Ranieri Bizzarri, Riccardo Nifosì, Stefania Abbruzzetti, Walter Rocchia, Sara Guidi, Daniele Arosio, Gianpiero Garau, Barbara Campanini, Elena Grandi, Fernanda Ricci, Cristiano Viappiani, and Fabio Beltram

pp 5494–5504

Publication Date (Web): April 17, 2007 (Article)

DOI: 10.1021/bi602646r

Abstract | Supporting Info

Catalytic Mechanism and Product Specificity of Rubisco Large Subunit Methyltransferase: QM/MM and MD Investigations

Xiaodong Zhang and Thomas C. Bruice

pp 5505–5514

Publication Date (Web): April 13, 2007 (Article)

DOI: 10.1021/bi700119p

Efficient and Erroneous Incorporation of Oxidized DNA Precursors by Human DNA Polymerase η

Masatomi Shimizu, Petr Gruz, Hiroyuki Kamiya, Chikahide Masutani, Yan Xu, Yukio Usui, Hiroshi Sugiyama, Hideyoshi Harashima, Fumio Hanaoka, and Takehiko Nohmi

pp 5515–5522

Publication Date (Web): April 18, 2007 (Article)

DOI: 10.1021/bi062238r

Structural Features of Target RNA Molecules Greatly Modulate the Cleavage Efficiency of trans-Acting Delta Ribozymes

Agata Świ

tkowska, Mariola Dutkiewicz, and Jerzy Ciesiołka

pp 5523–5533

Publication Date (Web): April 11, 2007 (Article)

DOI: 10.1021/bi6024287

Regulation of Energy Dissipation in Photosystem I by the Redox State of the Plastoquinone Pool

David Joly and Robert Carpentier

pp 5534–5541

Publication Date (Web): April 14, 2007 (Article)

DOI: 10.1021/bi602627d

Functional Characterization of Monomeric Photosystem II Core Preparations from Thermosynechococcus elongatus with or without the Psb27 Protein

Fikret Mamedov, Marc M. Nowaczyk, Anders Thapper, Matthias Rögner, and Stenbjörn Styring

pp 5542–5551

Publication Date (Web): April 14, 2007 (Article)

DOI: 10.1021/bi7000399

Oxidized Cholesterol Metabolites Found in Human Atherosclerotic Lesions Promote Apolipoprotein C-II Amyloid Fibril Formation

Cameron R. Stewart, Leanne M. Wilson, Qinghai Zhang, Chi L. L. Pham, Lynne J. Waddington, Maree K. Staples, David Stapleton, Jeffery W. Kelly, and Geoffrey J. Howlett

pp 5552–5561

Publication Date (Web): April 13, 2007 (Article)

DOI: 10.1021/bi602554z

Effect of Zinc, Copper, and Calcium on the Structure and Stability of Serum Amyloid A

Limin Wang and Wilfredo Colón

pp 5562–5569

Publication Date (Web): April 11, 2007 (Article)

DOI: 10.1021/bi602629y

Kinetic Mechanism of Enterococcal Aminoglycoside Phosphotransferase 2‘‘-Ib

Marta Toth, Jaroslav Zajicek, Choonkeun Kim, Joseph W. Chow, Clyde Smith, Shahriar Mobashery, and Sergei Vakulenko

pp 5570–5578

Publication Date (Web): April 11, 2007 (Article)

DOI: 10.1021/bi6024512

Abstract | Supporting Info

From Peptide to Protein: Comparative Analysis of the Substrate Specificity of N-Linked Glycosylation in C. jejuni

Mark M. Chen, Kerney Jebrell Glover, and Barbara Imperiali

pp 5579–5585

Publication Date (Web): April 17, 2007 (Article)

DOI: 10.1021/bi602633n

Abstract | Supporting Info

Thermodynamics of the Interaction between O-Acetylserine Sulfhydrylase and the C-Terminus of Serine Acetyltransferase

Sangaralingam Kumaran and Joseph M. Jez

pp 5586–5594

Publication Date (Web): April 11, 2007 (Article)

DOI: 10.1021/bi7001168

A Remote Substrate Docking Mechanism for the Tec Family Tyrosine Kinases

Raji E. Joseph, Lie Min, Ruo Xu, Eli D. Musselman, and Amy H. Andreotti

pp 5595–5603

Publication Date (Web): April 17, 2007 (Article)

DOI: 10.1021/bi700127c

Modification of Tryptophan and Methionine Residues Is Implicated in the Oxidative Inactivation of Surfactant Protein B

Dahis Manzanares, Karina Rodriguez-Capote, Suya Liu, Thomas Haines, Yudith Ramos, Lin Zhao, Amanda Doherty-Kirby, Gilles Lajoie, and Fred Possmayer

pp 5604–5615

Publication Date (Web): April 11, 2007 (Article)

DOI: 10.1021/bi062304p

Fluorescence Quenching by Nucleotides of the Plasma Membrane H⁺-ATPase from Kluyveromyces lactis

José G. Sampedro, Yadira G. Ruiz-Granados, Hugo Nájera, Alfredo Téllez-Valencia, and Salvador Uribe

pp 5616–5622

Publication Date (Web): April 17, 2007 (Article)

DOI: 10.1021/bi700016v

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