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Characterization of Bispecific Antibody Production in Cell Cultures by Unique Mixed Mode Size Exclusion Chromatography
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    Characterization of Bispecific Antibody Production in Cell Cultures by Unique Mixed Mode Size Exclusion Chromatography
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    • Haitao Jiang
      Haitao Jiang
      Merck Analytical R&D, Merck & Co., Inc., Kenilworth, New Jersey 07033, United States
      More by Haitao Jiang
    • Wei Xu
      Wei Xu
      Merck Analytical R&D, Merck & Co., Inc., Kenilworth, New Jersey 07033, United States
      More by Wei Xu
    • Ren Liu
      Ren Liu
      Merck Process R&D, MRL, Merck & Co., Inc., Kenilworth, New Jersey 07033, United States
      More by Ren Liu
    • Balrina Gupta
      Balrina Gupta
      Merck Process R&D, MRL, Merck & Co., Inc., Kenilworth, New Jersey 07033, United States
    • Bruce Kilgore
      Bruce Kilgore
      Merck Analytical R&D, Merck & Co., Inc., Kenilworth, New Jersey 07033, United States
    • Zhimei Du
      Zhimei Du
      Merck Process R&D, MRL, Merck & Co., Inc., Kenilworth, New Jersey 07033, United States
      More by Zhimei Du
    • Xiaoyu Yang*
      Xiaoyu Yang
      Merck Analytical R&D, Merck & Co., Inc., Kenilworth, New Jersey 07033, United States
      *Email: [email protected]. Tel: 908-740-6568.
      More by Xiaoyu Yang
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    Analytical Chemistry

    Cite this: Anal. Chem. 2020, 92, 13, 9312–9321
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    https://doi.org/10.1021/acs.analchem.0c01641
    Published June 4, 2020
    Copyright © 2020 American Chemical Society

    Abstract

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    Bispecific antibodies have received wide attention as promising immunotherapeutic agents because of their high specificity and the ability to target immune cells to tumors. However, analysis of bispecific antibodies is challenging because multiple forms of antibodies are potentially generated during production in cell culture. Most analyses of bispecific antibodies rely on liquid chromatography with mass spectrometry (LC-MS), which could miss detection or becomes less quantitative if those forms are not physically separated. Here, we report a novel and sensitive mixed mode size exclusion chromatography (MM SEC) coupled with multiangle light scattering (MALS) to analyze different forms of bispecific IgG molecules under native conditions. The method displayed great ability to separate various antibody forms with peak resolutions unmatched by other methods we tested, isolating desired bispecific molecules, parental homodimers, half molecules, and antibodies with mispaired light and heavy chains. Each peak was analyzed by online MALS and then identified and confirmed by intact and reduced LC-MS of isolated forms. MM SEC in this study performs by a novel mechanism through the interactions of resin with protein surface hydrophobic clusters distributed across CDRs of light chains. This novel MM SEC allows quantitative detection of even low abundance forms and provides a new tool for screening expression profiles of cell culture clones, monitoring purification, and evaluating drug substance purity.

    Copyright © 2020 American Chemical Society

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    Supporting Information

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.analchem.0c01641.

    • Characterization of MM SEC peaks by LC-MS for sample types 2 and 3 (PDF)

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    Cited By

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    This article is cited by 13 publications.

    1. Ben Niu, Benjamin Lee, Wen Chen, Cristian Alberto, Karen Betancourt Moreira, Philip Compton, Kristoff Homan, Jason Pinckney, Yaxing Zhu, Michelle Vendel, Karl Wetterhorn, Shana Walrond, Esrath Santha, Amanda Horowitz, Nicole Zaubi, Jeffrey Johnson. End-To-End Automated Intact Protein Mass Spectrometry for High-Throughput Screening and Characterization of Bispecific and Multispecific Antibodies. Analytical Chemistry 2024, 96 (45) , 18287-18300. https://doi.org/10.1021/acs.analchem.4c04833
    2. Steffen Lippold, Michaela Hook, Christian Spick, Alexander Knaupp, Kevin Whang, Fabian Ruperti, Lance Cadang, Nisana Andersen, Annette Vogt, Michael Grote, Dietmar Reusch, Markus Haberger, Feng Yang, Tilman Schlothauer. CD3 Target Affinity Chromatography Mass Spectrometry as a New Tool for Function–Structure Characterization of T-Cell Engaging Bispecific Antibody Proteoforms and Product-Related Variants. Analytical Chemistry 2023, 95 (4) , 2260-2268. https://doi.org/10.1021/acs.analchem.2c03827
    3. Jiangnan Zheng, Xiong Chen, Yun Yang, Chris Soon Heng Tan, Ruijun Tian. Mass Spectrometry-Based Protein Complex Profiling in Time and Space. Analytical Chemistry 2021, 93 (1) , 598-619. https://doi.org/10.1021/acs.analchem.0c04332
    4. Sophia Liu, Yuetian Yan, Cody M. Secor, Zachary R. Oberholtzer, Donna J. Skow, Mushhood Sheikh, Youmi Moon, Yue Fu, Cristinel Sandu, Shunhai Wang, Ning Li, Jennifer B. Nguyen, Michael P. Rosconi, Erica A. Pyles. Enrichment strategy and initial characterization of heterodimers enriched from a co-formulated cocktail of therapeutic antibodies against SARS-COV-2. mAbs 2024, 16 (1) https://doi.org/10.1080/19420862.2024.2338301
    5. Caitlin Fawcett, Joseph. R. Tickle, Charlotte. H. Coles. Facilitating high throughput bispecific antibody production and potential applications within biopharmaceutical discovery workflows. mAbs 2024, 16 (1) https://doi.org/10.1080/19420862.2024.2311992
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    7. Mengying Tian, Dandan Li, Lixia Hu, Wanyuan Dong, Tongdan Wang, Yifeng Li. Monitoring of the disulfide scrambled species by mixed-mode SEC-HPLC during the purification of a bispecific antibody. Protein Expression and Purification 2024, 223 , 106544. https://doi.org/10.1016/j.pep.2024.106544
    8. Ryte Poskute, Praveen Kallamvalliillam Sankaran, Laura Sewell, Giordana Lepore, Rebecca Shrubsall, Lydia Dewis, Yasunori Watanabe, Vanessa Wong, Laura Pascual Fernandez, Rahul Mishra, Alexander Holt, Susie Sou, Claire Harris, Cristina Moreno Rodriguez, Ayca Cankorur-Cetinkaya, Jennifer Smith, Nikola Lonska, Adam Powell, Tingting Cui, Matthew Cheeks, Viv Lindo. Identification and quantification of chain-pairing variants or mispaired species of asymmetric monovalent bispecific IgG1 monoclonal antibody format using reverse-phase polyphenyl chromatography coupled electrospray ionization mass spectrometry. Journal of Chromatography B 2024, 1237 , 124085. https://doi.org/10.1016/j.jchromb.2024.124085
    9. Xuanwen Li. Recent applications of quantitative mass spectrometry in biopharmaceutical process development and manufacturing. Journal of Pharmaceutical and Biomedical Analysis 2023, 234 , 115581. https://doi.org/10.1016/j.jpba.2023.115581
    10. Shabdita Vatsa. In silico prediction of post-translational modifications in therapeutic antibodies. mAbs 2022, 14 (1) https://doi.org/10.1080/19420862.2021.2023938
    11. Zhanying Chu, Manman Zhu, Weibing Zhang, Yang Zhao, Xiaoyun Gong, You Jiang, Liqing Wu, Rui Zhai, Xinhua Dai, Xiang Fang. Layer-by-layer coating and chemical cross-linking of multilayer polysaccharides on silica for mixed-mode HPLC application. Chemical Communications 2021, 57 (96) , 12956-12959. https://doi.org/10.1039/D1CC04467B
    12. Edouard C. Nice. The separation sciences, the front end to proteomics: An historical perspective. Biomedical Chromatography 2021, 35 (1) https://doi.org/10.1002/bmc.4995
    13. Tobias Graf, Michael Leiss, Markus Haberger, Patrick Bulau. Advanced structural elucidation of new antibody formats by mass spectrometry. 2021, 199-234. https://doi.org/10.1016/B978-0-12-822318-5.00005-3

    Analytical Chemistry

    Cite this: Anal. Chem. 2020, 92, 13, 9312–9321
    Click to copy citationCitation copied!
    https://doi.org/10.1021/acs.analchem.0c01641
    Published June 4, 2020
    Copyright © 2020 American Chemical Society

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