Peptide Nucleic Acid-Functionalized Nanochannel Biosensor for the Highly Sensitive Detection of Tumor Exosomal MicroRNAClick to copy article linkArticle link copied!
- Ping-Ping XiaoPing-Ping XiaoSchool of Laboratory Medicine, Hubei University of Chinese Medicine, 16 Huangjia Lake West Road, Wuhan 430065, ChinaMore by Ping-Ping Xiao
- Qiang-Qiang WanQiang-Qiang WanSchool of Laboratory Medicine, Hubei University of Chinese Medicine, 16 Huangjia Lake West Road, Wuhan 430065, ChinaWuhan First Hospital, Wuhan 430022, ChinaMore by Qiang-Qiang Wan
- Tangbin LiaoTangbin LiaoSchool of Pharmacy, Hubei University of Chinese Medicine, 16 Huangjia Lake West Road, Wuhan 430065, ChinaMore by Tangbin Liao
- Ji-Yuan TuJi-Yuan TuSchool of Laboratory Medicine, Hubei University of Chinese Medicine, 16 Huangjia Lake West Road, Wuhan 430065, ChinaMore by Ji-Yuan Tu
- Guo-Jun Zhang*Guo-Jun Zhang*Email: [email protected]School of Laboratory Medicine, Hubei University of Chinese Medicine, 16 Huangjia Lake West Road, Wuhan 430065, ChinaMore by Guo-Jun Zhang
- Zhong-Yue Sun*Zhong-Yue Sun*Email: [email protected]School of Laboratory Medicine, Hubei University of Chinese Medicine, 16 Huangjia Lake West Road, Wuhan 430065, ChinaMore by Zhong-Yue Sun
Abstract
Compared with free miRNAs in blood, miRNAs in exosomes have higher abundance and stability. Therefore, miRNAs in exosomes can be regarded as an ideal tumor marker for early cancer diagnosis. Here, a peptide nucleic acid (PNA)-functionalized nanochannel biosensor for the ultrasensitive and specific detection of tumor exosomal miRNAs is proposed. After PNA was covalently bound to the inner surface of the nanochannels, the detection of tumor exosomal miRNAs was achieved by the charge changes on the surface of nanochannels before and after hybridization (PNA–miRNA). Due to the neutral characteristics of PNA, the efficiency of PNA–miRNA hybridization was improved by significantly reducing the background signal. This biosensor could not only specifically distinguish target miRNA-10b from single-base mismatched miRNA but also achieve a detection limit as low as 75 aM. Moreover, the biosensor was further used to detect exosomal miRNA-10b derived from pancreatic cancer cells and normal pancreatic cells. The results indicate that this biosensor could effectively distinguish pancreatic cancer tumor-derived exosomes from the normal control group, and the detection results show good consistency with those of the quantitative reverse-transcription polymerase chain reaction method. In addition, the biosensor was used to detect exosomal miRNA-10b in clinical plasma samples, and it was found that the content of exosomal miRNA-10b in cancer patients was generally higher than that of healthy individuals, proving that the method is expected to be applied for the early diagnosis of cancer.
Cited By
This article is cited by 43 publications.
- Xiaojin Zhang, Haowen Cai, Tiantian Hu, Meihua Lin, Yu Dai, Fan Xia. DNA-Functionalized Solid-State Nanochannels with Enhanced Sensing. Accounts of Materials Research 2024, Article ASAP.
- Weiwei Zhang, Miaoyu Chen, Qun Ma, Zhixiao Si, Sanmei Jin, Qiujiao Du, Limin Zhang, Yu Huang, Fan Xia. Role of Outer Surface Probes on Bullet-Shaped Asymmetric Solid-State Nanochannels for Lysozyme Protein Sensing. Analytical Chemistry 2024, 96
(6)
, 2445-2454. https://doi.org/10.1021/acs.analchem.3c04413
- Bochen Ma, Li Li, Yuting Bao, Liang Yuan, Songlin Liu, Liqing Qi, Sihui Tong, Yating Xiao, Lubin Qi, Xiaohong Fang, Yifei Jiang. Optical Imaging of Single Extracellular Vesicles: Recent Progress and Prospects. Chemical & Biomedical Imaging 2024, 2
(1)
, 27-46. https://doi.org/10.1021/cbmi.3c00095
- Lin Shi, Haiying Cai, Han Wang, Qiwei Wang, Lili Shi, Tao Li. Proximity-Enhanced Electrochemiluminescence Sensing Platform for Effective Capturing of Exosomes and Probing Internal MicroRNAs Involved in Cancer Cell Apoptosis. Analytical Chemistry 2023, 95
(48)
, 17662-17669. https://doi.org/10.1021/acs.analchem.3c03412
- Xiujuan Qiao, Zeng-Hui Qian, Wenpeng Sun, Chuan-Yong Zhu, Yanxin Li, Xiliang Luo. Phosphorylation of Oligopeptides: Design of Ultra-Hydrophilic Zwitterionic Peptides for Anti-Fouling Detection of Nucleic Acids in Saliva. Analytical Chemistry 2023, 95
(29)
, 11091-11098. https://doi.org/10.1021/acs.analchem.3c01843
- Yanhu Wang, Mengchun Yang, Shenguang Ge, Xiao Wang, Jinghua Yu. Piezotronic Effect-Assisted Photoelectrochemical Exosomal MicroRNA Monitoring Based on an Electron Donor Self-Supplying Strategy. Analytical Chemistry 2022, 94
(39)
, 13522-13532. https://doi.org/10.1021/acs.analchem.2c02821
- Yufan Zhang, Fan Yang, Wei Wei, Yeyu Wang, Shuangshuang Yang, Jinze Li, Yi Xing, Liping Zhou, Wenhao Dai, Haifeng Dong. Self-Propelled Janus Mesoporous Micromotor for Enhanced MicroRNA Capture and Amplified Detection in Complex Biological Samples. ACS Nano 2022, 16
(4)
, 5587-5596. https://doi.org/10.1021/acsnano.1c10437
- Siqi Zhang, Wei Shi, Kai-Bin Li, De-Man Han, Jing-Juan Xu. Ultrasensitive and Label-Free Detection of Multiple DNA Methyltransferases by Asymmetric Nanopore Biosensor. Analytical Chemistry 2022, 94
(10)
, 4407-4416. https://doi.org/10.1021/acs.analchem.1c05332
- Yanhu Wang, Mengchun Yang, Huihui Shi, Shenguang Ge, Xiao Wang, Jinghua Yu. Photoelectrochemical Detection of Exosomal miRNAs by Combining Target-Programmed Controllable Signal Quenching Engineering. Analytical Chemistry 2022, 94
(7)
, 3082-3090. https://doi.org/10.1021/acs.analchem.1c04086
- Shijun Lin, Yiheng Liu, Jingjing Hu, Fan Xia, Xiaoding Lou. Towards effective functionalization of nanopores/nanochannels: the role of amidation reactions. Chemical Communications 2025, 40 https://doi.org/10.1039/D4CC06316C
- Tang-Bin Liao, Ke-Xin Luo, Ji-Yuan Tu, Yu-Lin Zhang, Guo-Jun Zhang, Zhong-Yue Sun. DSN signal amplification strategy based nanochannels biosensor for the detection of miRNAs. Bioelectrochemistry 2024, 160 , 108771. https://doi.org/10.1016/j.bioelechem.2024.108771
- Zhiwei Shang, Defang Ding, Zixuan Deng, Jing Zhao, Mengyu Yang, Yuling Xiao, Wenjing Chu, Shijun Xu, Zhicheng Zhang, Xiaoqing Yi, Meihua Lin, Fan Xia. Programming the Dynamic Range of Nanochannel Biosensors for MicroRNA Detection Through Allosteric DNA Probes. Angewandte Chemie 2024, 141 https://doi.org/10.1002/ange.202417280
- Zhiwei Shang, Defang Ding, Zixuan Deng, Jing Zhao, Mengyu Yang, Yuling Xiao, Wenjing Chu, Shijun Xu, Zhicheng Zhang, Xiaoqing Yi, Meihua Lin, Fan Xia. Programming the Dynamic Range of Nanochannel Biosensors for MicroRNA Detection Through Allosteric DNA Probes. Angewandte Chemie International Edition 2024, 33 https://doi.org/10.1002/anie.202417280
- Pearl Arora, Haiyan Zheng, Sathishkumar Munusamy, Rana Jahani, Xiyun Guan. Nanopore‐based detection of periodontitis biomarker miR31 in saliva samples. ELECTROPHORESIS 2024, 45
(21-22)
, 2034-2044. https://doi.org/10.1002/elps.202400134
- Jing Ye, Qi Liang, Qianglong Tan, Mengyao Chai, Wendai Cheng, Minzhi Fan, Yunshan Zhang, Jie Zhan, Yaxin Wang, Jiahong Wen, Yongjun Zhang, Xiaoyu Zhao, Diming Zhang. A bulged-type enzyme-free recognition strategy designed for single nucleotide polymorphisms integrating with label-free electrochemical biosensor. Biosensors and Bioelectronics 2024, 263 , 116601. https://doi.org/10.1016/j.bios.2024.116601
- Shuanglin Deng, Wenyan Li, Zhenrun Li, Peilin Wang, Qiang Ma. Bright luminescent Zn2GeO4:Mn NP/MXene hydrogel-based ECL biosensor for glioblastoma diagnosis. Talanta 2024, 276 , 126214. https://doi.org/10.1016/j.talanta.2024.126214
- Xiaoyan Sun, Yafei Chen, Haiyan Li, Wei Xing, Mingli Chen, Jianhua Wang, Lei Ye. A cubic DNA nanocage probe for
in situ
analysis of miRNA-10b in tumor-derived extracellular vesicles. Chemical Communications 2024, 60
(36)
, 4777-4780. https://doi.org/10.1039/D4CC01049C
- Xiaofan Pu, Chaolei Zhang, Guoping Ding, Hongpeng Gu, Yang Lv, Tao Shen, Tianshu Pang, Liping Cao, Shengnan Jia. Diagnostic plasma small extracellular vesicles miRNA signatures for pancreatic cancer using machine learning methods. Translational Oncology 2024, 40 , 101847. https://doi.org/10.1016/j.tranon.2023.101847
- Jixuan Han, Chen Wang, Ling Zhu, Yanlian Yang. Emerging Sensing and In Situ Detection Technologies for the Analysis of Extracellular Vesicle miRNAs. Advanced NanoBiomed Research 2024, 4
(1)
https://doi.org/10.1002/anbr.202300067
- Yi Yu, Chunzi Liang, Qiang-Qiang Wan, Dan Jin, Xi Liu, Zhiyong Zhang, Zhong-Yue Sun, Guo-Jun Zhang. Integrated FET sensing microsystem for specific detection of pancreatic cancer exosomal miRNA10b. Analytica Chimica Acta 2023, 1284 , 341995. https://doi.org/10.1016/j.aca.2023.341995
- Siqi Zhang, Huahao Shao, Kai-Bin Li, Wei Shi, De-Man Han. Nanofluidic sensing platform for PNK assay using nonlinear hybridization chain reaction and its application in DNA logic circuit. Biosensors and Bioelectronics 2023, 240 , 115632. https://doi.org/10.1016/j.bios.2023.115632
- Yu Huang, Lingxiao Liu, Cihui Luo, Wei Liu, Xiaoding Lou, Lei Jiang, Fan Xia. Solid-state nanochannels for bio-marker analysis. Chemical Society Reviews 2023, 52
(18)
, 6270-6293. https://doi.org/10.1039/D2CS00865C
- Xiande Yang, Ying Chen, Yijin Qin, Lizhen Wen. CdS Nanoparticles Self-Assembled in Porous Anodic Aluminum Oxide Nanochannels and Used for Carcinoembryonic Antigen Detection. Journal of Electronic Materials 2023, 52
(8)
, 5662-5669. https://doi.org/10.1007/s11664-023-10510-x
- Fereshteh Rahdan, Fateme Bina, Elham Norouz Dolatabadi, Donya Shaterabadi, Seyyed Hossein Khatami, Yousof Karami, Nafiseh Dorosti, Mortaza Taheri-Anganeh, Peyman Asadi, Rahmatollah Soltani, Mohammad Reza Pashaei, Ahmad Movahedpour. MicroRNA electrochemical biosensors for pancreatic cancer. Clinica Chimica Acta 2023, 548 , 117472. https://doi.org/10.1016/j.cca.2023.117472
- Wei Yi, Chuanping Zhang, Qianchun Zhang, Changbo Zhang, Yebo Lu, Lanhua Yi, Xingzhu Wang. Solid-State Nanopore/Nanochannel Sensing of Single Entities. Topics in Current Chemistry 2023, 381
(4)
https://doi.org/10.1007/s41061-023-00425-w
- Yanxin Li, Shuju Zhao, Zhenying Xu, Xiujuan Qiao, Mingxuan Li, Youke Li, Xiliang Luo. Peptide nucleic acid and antifouling peptide based biosensor for the non-fouling detection of COVID-19 nucleic acid in saliva. Biosensors and Bioelectronics 2023, 225 , 115101. https://doi.org/10.1016/j.bios.2023.115101
- Zhe Lu, Wei Ni, Nian Liu, Dan Jin, Tingxian Li, Kun Li, Yuling Zhang, Qunfeng Yao, Guo-Jun Zhang. CRISPR/Cas12a-based fluorescence biosensor for detection of exosomal miR-21 derived from lung cancer. Microchemical Journal 2023, 187 , 108370. https://doi.org/10.1016/j.microc.2022.108370
- Rui Lv, Xing Wang, Zhiqiang Mao, Yurong Bai, Junxing Hao, Fan Zhang. Engineering Sandwiched Nanochannel Aptasensor for Efficiently Screening Cancer Cells. Chemistry – A European Journal 2023, 29
(14)
https://doi.org/10.1002/chem.202203380
- Qun Ma, Liang Chen, Pengcheng Gao, Fan Xia. Solid-state nanopore/channels meet DNA nanotechnology. Matter 2023, 6
(2)
, 373-396. https://doi.org/10.1016/j.matt.2022.11.026
- Shuo Yin, Aipeng Chen, Yue Ding, Jia Song, Rui Chen, Peng Zhang, Chaoyong Yang. Recent advances in exosomal RNAs analysis towards diagnostic and therapeutic applications. TrAC Trends in Analytical Chemistry 2023, 158 , 116840. https://doi.org/10.1016/j.trac.2022.116840
- Erna Jia, Na Ren, Xianquan Shi, Rongkui Zhang, Haixin Yu, Fan Yu, Shaoyou Qin, Jinru Xue. Extracellular vesicle biomarkers for pancreatic cancer diagnosis: a systematic review and meta-analysis. BMC Cancer 2022, 22
(1)
https://doi.org/10.1186/s12885-022-09463-x
- Jinyue Shi, Yu Lin, Weiling Qin, Mingxiang Li, Yuyi Zhou, Yeyu Wu, Hu Luo, Ke-Jing Huang, Xuecai Tan. Superior performance of a graphdiyne self-powered biosensor with exonuclease III-assisted signal amplification for sensitive detection of microRNAs. The Analyst 2022, 147
(22)
, 4991-4999. https://doi.org/10.1039/D2AN01384C
- Bingqian Lin, Jinting Jiang, Jingxuan Jia, Xiang Zhou. Recent Advances in Exosomal miRNA Biosensing for Liquid Biopsy. Molecules 2022, 27
(21)
, 7145. https://doi.org/10.3390/molecules27217145
- Eric Z. Zeng, Isabelle Chen, Xingchi Chen, Xuegang Yuan. Exosomal MicroRNAs as Novel Cell-Free Therapeutics in Tissue Engineering and Regenerative Medicine. Biomedicines 2022, 10
(10)
, 2485. https://doi.org/10.3390/biomedicines10102485
- Zhichu Xiang, Lele Li, Yuliang Zhao. Recent progress in PNA-based biosensing technology. SCIENTIA SINICA Chimica 2022, 52
(9)
, 1592-1600. https://doi.org/10.1360/SSC-2022-0070
- Xin-Xin Peng, Xiaoling Qin, You Qin, Yuanhang Xiang, Guo-Jun Zhang, Fan Yang. Bioprobes-regulated precision biosensing of exosomes: From the nanovesicle surface to the inside. Coordination Chemistry Reviews 2022, 463 , 214538. https://doi.org/10.1016/j.ccr.2022.214538
- Kun Li, Jiyuan Tu, Yulin Zhang, Dan Jin, Tingxian Li, Jiahao Li, Wei Ni, Meng-Meng Xiao, Zhi-Yong Zhang, Guo-Jun Zhang. Ultrasensitive detection of exosomal miRNA with PMO-graphene quantum dots-functionalized field-effect transistor biosensor. iScience 2022, 25
(7)
, 104522. https://doi.org/10.1016/j.isci.2022.104522
- Yu-Lin Liu, Yu-Xiang Zhao, Ya-Bei Li, Zhao-Yang Ye, Jun-Jie Zhang, Yan Zhou, Tian-Yang Gao, Fei Li. Recent Advances of Nanoelectrodes for Single-Cell Electroanalysis: From Extracellular, Intercellular to Intracellular. Journal of Analysis and Testing 2022, 6
(2)
, 178-192. https://doi.org/10.1007/s41664-022-00223-1
- Huisi Yang, Jiaying Zhao, Jiangbo Dong, Li Wen, Zhikun Hu, Congjuan He, Faliang Xu, Danqun Huo, Changjun Hou. Simultaneous detection of exosomal microRNAs by nucleic acid functionalized disposable paper-based sensors. Chemical Engineering Journal 2022, 438 , 135594. https://doi.org/10.1016/j.cej.2022.135594
- Weiwei Wang, Jing Zhao, Changlong Hao, Shudong Hu, Chen Chen, Yi Cao, Zhengyu Xu, Jun Guo, Liguang Xu, Maozhong Sun, Chuanlai Xu, Hua Kuang. The Development of Chiral Nanoparticles to Target NK Cells and CD8
+
T Cells for Cancer Immunotherapy. Advanced Materials 2022, 34
(16)
https://doi.org/10.1002/adma.202109354
- Ting-Ting Liang, Xiaoling Qin, Yuanhang Xiang, Yujin Tang, Fan Yang. Advances in nucleic acids-scaffolded electrical sensing of extracellular vesicle biomarkers. TrAC Trends in Analytical Chemistry 2022, 148 , 116532. https://doi.org/10.1016/j.trac.2022.116532
- Zhe Lu, wei Ni, Nian Liu, Dan Jin, Tingxian Li, Kun Li, Yulin Zhang, Qunfeng Yao, Guo-Jun Zhang. Crispr/Cas12a-Based Fluorescence Biosensor for Detection of Exosomal Mir-21 Derived from Lung Cancer. SSRN Electronic Journal 2022, 72 https://doi.org/10.2139/ssrn.4088276
- Yulin Zhang, Zhe Lu, wei Ni, Nian Liu, Dan Jin, Tingxian Li, Kun Li, Yuling Zhang, Qunfeng Yao, Guo-Jun Zhang. Crispr/Cas12a-Based Fluorescence Biosensor for Detection of Exosomal Mir-21 Derived from Lung Cancer. SSRN Electronic Journal 2022, 72 https://doi.org/10.2139/ssrn.4112020
Article Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.
Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.
The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated.