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Signal-On Electrochemical Detection for Drug-Resistant Hepatitis B Virus Mutants through Three-Way Junction Transduction and Exonuclease III-Assisted Catalyzed Hairpin Assembly

  • Jiaxue Yu
    Jiaxue Yu
    Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education, National & Local United Engineering Laboratory for Power Batteries, Key Laboratory of Nanobiosensing and Nanobioanalysis at Universities of Jilin Province, Analysis and Testing Center, Department of Chemistry, Northeast Normal University, Changchun, Jilin Province 130024, China
    State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, P. R. China
    More by Jiaxue Yu
  • Jingju Liu
    Jingju Liu
    Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education, National & Local United Engineering Laboratory for Power Batteries, Key Laboratory of Nanobiosensing and Nanobioanalysis at Universities of Jilin Province, Analysis and Testing Center, Department of Chemistry, Northeast Normal University, Changchun, Jilin Province 130024, China
    More by Jingju Liu
  • Chong-Bo Ma*
    Chong-Bo Ma
    Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education, National & Local United Engineering Laboratory for Power Batteries, Key Laboratory of Nanobiosensing and Nanobioanalysis at Universities of Jilin Province, Analysis and Testing Center, Department of Chemistry, Northeast Normal University, Changchun, Jilin Province 130024, China
    *Email: [email protected] (C.B. Ma).
    More by Chong-Bo Ma
  • Lijuan Qi
    Lijuan Qi
    State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, P. R. China
    Department of Chemistry, University of Science & Technology of China, Hefei, Anhui 230026, China
    More by Lijuan Qi
  • Yan Du
    Yan Du
    State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, P. R. China
    Department of Chemistry, University of Science & Technology of China, Hefei, Anhui 230026, China
    More by Yan Du
  • Xintong Hu
    Xintong Hu
    Key Laboratory of Organ Regeneration & Transplantation of the Ministry of Education, Genetic Diagnosis Center, The First Hospital of Jilin University, Changchun 130021, China
    More by Xintong Hu
  • Yanfang Jiang*
    Yanfang Jiang
    Key Laboratory of Organ Regeneration & Transplantation of the Ministry of Education, Genetic Diagnosis Center, The First Hospital of Jilin University, Changchun 130021, China
    *Email: [email protected] (Y. Jiang).
  • Ming Zhou*
    Ming Zhou
    Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education, National & Local United Engineering Laboratory for Power Batteries, Key Laboratory of Nanobiosensing and Nanobioanalysis at Universities of Jilin Province, Analysis and Testing Center, Department of Chemistry, Northeast Normal University, Changchun, Jilin Province 130024, China
    *Email: [email protected] (M. Zhou).
    More by Ming Zhou
  • , and 
  • Erkang Wang
    Erkang Wang
    State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, P. R. China
    Department of Chemistry, University of Science & Technology of China, Hefei, Anhui 230026, China
    More by Erkang Wang
Cite this: Anal. Chem. 2022, 94, 2, 600–605
Publication Date (Web):December 17, 2021
https://doi.org/10.1021/acs.analchem.1c03451
Copyright © 2021 American Chemical Society

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    Abstract

    Abstract Image

    The present detection method for hepatitis B virus (HBV) drug-resistant mutation has a high misdiagnosis rate and usually needs to meet stringent requirements for technology and equipment, leading to complex and time-consuming manipulation and drawback of high costs. Herein, with the purpose of developing cost-effective, highly efficient, and handy diagnosis for HBV drug-resistant mutants, we propose an electrochemical signal-on strategy through the three-way junction (3WJ) transduction and exonuclease III (Exo III)-assisted catalyzed hairpin assembly (CHA). To achieve single-copy gene detection, loop-mediated nucleic acid isothermal amplification (LAMP), one of the highly promising and compatible techniques to revolutionize point-of-care genetic detection, is first adopted for amplification. The rtN236T mutation, an error encoded by codon 236 of the reverse transcriptase region of HBV DNA, was employed as the model gene target. Under the optimized conditions, it allows end-point transduction from HBV drug-resistant mutants-genomic information to electrochemical signals with ultrahigh sensitivity, specificity, and signal-to-noise ratio, showing the lowest detection concentration down to 2 copies/μL. Such a method provides a possibly new principle for ideal in vitro diagnosis, supporting the construction of a clinic HBV diagnosis platform with high accuracy and generalization. Moreover, it is not restricted by specific nucleic acid sequences but can be applied to the detection of various disease genes, laying the foundation for multiple detection.

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.analchem.1c03451.

    • Part of the Experimental Section like Materials and Methods, optimization of 3WJ-Exo III-assisted CHA reaction, and standard LAMP reactions. Cyclic voltammetry of Au electrode, electrochemical impedance spectroscopy for interface fabrication, characterization of CHA reaction, optimization of enzyme dosage, native PAGE of 3WJ probe formation and release with mimic-236T, optimization of volume of LAMP amplicons, SWV responses for different concentration of mimic T and LAMP products, electrochemical signal responses of HBV DNAs extracted from serum of four HBV infected patients, sequence of oligonucleotides used in experiments and comparison of detection accuracy between DNA sequencing and our assay for HBV patient samples. (PDF)

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    Cited By

    This article is cited by 6 publications.

    1. Yi Sun, Sicai Zhang, Lijuan Qi, Xiaojun Zhang, Meiting Yang, Zhijun Guo, Zhenxin Wang, Yan Du. Advancing Multiple Detection in RT-LAMP with a Specific Probe Assembled from Plural Three-Way-Junction Structures. Analytical Chemistry 2023, 95 (48) , 17808-17817. https://doi.org/10.1021/acs.analchem.3c03877
    2. Adam Pruška, Julian A. Harrison, Anton Granzhan, Adrien Marchand, Renato Zenobi. Solution and Gas-Phase Stability of DNA Junctions from Temperature-Controlled Electrospray Ionization and Surface-Induced Dissociation. Analytical Chemistry 2023, 95 (38) , 14384-14391. https://doi.org/10.1021/acs.analchem.3c02742
    3. Ya-Ling Chen, Xiaoming Sun, Jing-Wei He, Meng-Kun Xin, Da Liu, Cheng-Yu Li. Light-Driven and Metal–Organic Framework Synergetic Loaded DNA Tetrahedral Amplifier for Exonuclease III-Powered All-in-One Biosensing and Chemotherapy in Live Biosystems. ACS Applied Materials & Interfaces 2023, 15 (28) , 34311-34320. https://doi.org/10.1021/acsami.3c06626
    4. Yu-Zhuo Guo, Yu-Ting Yang, Yi-Fei Chen, Jia-Li Liu, Ya-Qin Chai, Ruo Yuan. Nitrogen-, Sulfur-, and Fluorine-Codoped Carbon Dots with Low Excitation Potential and High Electrochemiluminescence Efficiency for Sensitive Detection of Matrix Metalloproteinase-2. Analytical Chemistry 2023, 95 (17) , 7021-7029. https://doi.org/10.1021/acs.analchem.3c00685
    5. Qianru Li, Manru Zhang, Qingxin Zhang, Zhixue Zhu, Zhiqiang Guo, Jingjing Li, Wanqing Xu, Jingru Zhu, Yuying Yao, Zongqiang Li, Yu Wang, Jiadong Huang, Su Liu. An autonomous synthetic DNA machine for ultrasensitive detection of Salmonella typhimurium based on bidirectional primers exchange reaction cascades. Talanta 2023, 252 , 123833. https://doi.org/10.1016/j.talanta.2022.123833
    6. Jing Liu, Ruke Wang, Hong Zhou, Motilal Mathesh, Mukul Dubey, Wengan Zhang, Bo Wang, Wenrong Yang. Nucleic acid isothermal amplification-based soft nanoarchitectonics as an emerging electrochemical biosensing platform. Nanoscale 2022, 14 (29) , 10286-10298. https://doi.org/10.1039/D2NR02031A

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