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Elucidating the Structure of Ranitidine Hydrochloride Form II: Insights from Solid-State Spectroscopy and Ab Initio Simulations

  • Kacper Drużbicki*
    Kacper Drużbicki
    Department of Radiospectroscopy, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614, Poznan, Poland
    Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research, 141980, Dubna, Russian Federation
    *E-mail: [email protected]. Phone: +48 618 295 205.
  • Aleksandra Pajzderska
    Aleksandra Pajzderska
    Department of Radiospectroscopy, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614, Poznan, Poland
  • Dorota Chudoba
    Dorota Chudoba
    Department of Radiospectroscopy, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614, Poznan, Poland
    Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research, 141980, Dubna, Russian Federation
  • Jacek Jenczyk
    Jacek Jenczyk
    NanoBioMedical Centre, Adam Mickiewicz University, Umultowska 85, 61-614, Poznan, Poland
  • Marcin Jarek
    Marcin Jarek
    NanoBioMedical Centre, Adam Mickiewicz University, Umultowska 85, 61-614, Poznan, Poland
    More by Marcin Jarek
  • Jadwiga Mielcarek
    Jadwiga Mielcarek
    Department of Inorganics and Analytical Chemistry, Poznan Univeristy of Medical Sciences, Grunwaldzka 6, 60-780 Poznan, Poland
  • , and 
  • Jan Wa̧sicki
    Jan Wa̧sicki
    Department of Radiospectroscopy, Faculty of Physics  and  NanoBioMedical Centre, Adam Mickiewicz University, Umultowska 85, 61-614, Poznan, Poland
Cite this: Cryst. Growth Des. 2018, 18, 8, 4671–4681
Publication Date (Web):July 3, 2018
https://doi.org/10.1021/acs.cgd.8b00639
Copyright © 2018 American Chemical Society

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Abstract

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We present a complex, computationally supported solid-state spectroscopy study, elucidating the local order in a blockbuster anti-ulcer drug, ranitidine hydrochloride form II. To this end, dispersion-corrected periodic density functional theory calculations were combined with powder X-ray diffraction, solid-state nuclear magnetic resonance, and low-frequency vibrational spectroscopy, delivering a refined structural model. We found that a competition of nearly iso-energetic substructures, formed by enamine-type species, gives rise to the formation of several potential polymorphs. The considered models were critically examined in terms of both the stabilization energy and the spectral response. While previous studies left the crystal structure considered to be conformationally disordered at a molecular level, we found that the disorder is realized far beyond the local molecular arrangement, elucidating formation of infinite nets of hydrogen-bonded chains, linking both Z and E enamine fragments. Contrary to the previously proposed model, such an arrangement is found to be highly energetically favorable, disclosing the source of the high stability of form II. An improved atomistic model has been proposed, successfully accounting for all available spectroscopic data. In particular, we examine the presented structural arrangement to perfectly describe both optical and neutron terahertz fingerprints, representing string and robust assessment of the validity of the crystal structure with its sensitivity to the crystal packing and the intermolecular forces present therein.

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The Supporting Information is available free of charge on the ACS Publications website at DOI: 10.1021/acs.cgd.8b00639.

  • Analysis of the refined structural models and the intermolecular interactions present therein, correlation between the calculated and experimental phonon frequencies, tentative assignment of the phonon modes, and crystal coordinates for selected theoretical models used in this study (PDF)

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Cited By

This article is cited by 9 publications.

  1. Elyse M. Kleist, Michael T. Ruggiero. Advances in Low-Frequency Vibrational Spectroscopy and Applications in Crystal Engineering. Crystal Growth & Design 2022, 22 (2) , 939-953. https://doi.org/10.1021/acs.cgd.1c00850
  2. Isabel Vázquez-Fernández, Kacper Drużbicki, Felix Fernandez-Alonso, Sanghamitra Mukhopadhyay, Peter Nockemann, Stewart F. Parker, Svemir Rudić, Simona-Maria Stana, John Tomkinson, Darius J. Yeadon, Kenneth R. Seddon, Natalia V. Plechkova. Spectroscopic Signatures of Hydrogen-Bonding Motifs in Protonic Ionic Liquid Systems: Insights from Diethylammonium Nitrate in the Solid State. The Journal of Physical Chemistry C 2021, 125 (44) , 24463-24476. https://doi.org/10.1021/acs.jpcc.1c05137
  3. Yuriy A. Abramov, Peiyu Zhang, Qiao Zeng, Mingjun Yang, Yang Liu, Sivakumar Sekharan. Computational Insights into Kinetic Hindrance Affecting Crystallization of Stable Forms of Active Pharmaceutical Ingredients. Crystal Growth & Design 2020, 20 (3) , 1512-1525. https://doi.org/10.1021/acs.cgd.9b01153
  4. Aleksandra Pajzderska, Kacper Drużbicki, Paweł Bilski, Jacek Jenczyk, Marcin Jarek, Jadwiga Mielcarek, Jan Wąsicki. Environmental Effects on the Molecular Mobility of Ranitidine Hydrochloride: Crystalline State versus Drug Loaded into the Silica Matrix. The Journal of Physical Chemistry C 2019, 123 (30) , 18364-18375. https://doi.org/10.1021/acs.jpcc.9b03144
  5. Madhumathi Lakshmipathi, Srinu Tothadi, Franziska Emmerling, Biswajit Bhattacharya, Soumyajit Ghosh. Different mechanical responses of dimorphic forms of Anthracene Schiff base crystal. Journal of Molecular Structure 2022, 1252 , 132182. https://doi.org/10.1016/j.molstruc.2021.132182
  6. Kacper Drużbicki, Mattia Gaboardi, Felix Fernandez-Alonso. Dynamics & Spectroscopy with Neutrons—Recent Developments & Emerging Opportunities. Polymers 2021, 13 (9) , 1440. https://doi.org/10.3390/polym13091440
  7. S.E. Kichanov, S. Dyussembekova, J. Wąsicki, W. Nawrocik, D.P. Kozlenko, N.M. Belozerova, B.N. Savenko. A high pressure effect on the vibrational spectra of ranitidine hydrochloride. Journal of Molecular Structure 2020, 1218 , 128515. https://doi.org/10.1016/j.molstruc.2020.128515
  8. Paul Hodgkinson. NMR crystallography of molecular organics. Progress in Nuclear Magnetic Resonance Spectroscopy 2020, 118-119 , 10-53. https://doi.org/10.1016/j.pnmrs.2020.03.001
  9. Aleksandra Pajzderska, Kacper Drużbicki, Miguel Angel Gonzalez, Jacek Jenczyk, Jadwiga Mielcarek, Jan Wąsicki. Diversity of methyl group dynamics in felodipine: a DFT supported NMR and QENS study. CrystEngComm 2018, 20 (45) , 7371-7385. https://doi.org/10.1039/C8CE01605D

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