PlayMolecule Viewer: A Toolkit for the Visualization of Molecules and Other DataClick to copy article linkArticle link copied!
- Mariona Torrens-FontanalsMariona Torrens-FontanalsAcellera Labs, C Dr Trueta 183, 08005 Barcelona, SpainMore by Mariona Torrens-Fontanals
- Panagiotis Tourlas
- Stefan Doerr
- Gianni De Fabritiis*Gianni De Fabritiis*E-mail: [email protected]Computational Science Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB), C Dr. Aiguader 88, 08003 Barcelona, SpainAcellera, Devonshire House, 582 Honeypot Lane, HA7 1JS Stanmore Middlesex, United KingdomInstitució Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluis Companys 23, 08010 Barcelona, SpainMore by Gianni De Fabritiis
Abstract
PlayMolecule Viewer is a web-based data visualization toolkit designed to streamline the exploration of data resulting from structural bioinformatics or computer-aided drug design efforts. By harnessing state-of-the-art web technologies such as WebAssembly, PlayMolecule Viewer integrates powerful Python libraries directly within the browser environment, which enhances its capabilities to manage multiple types of molecular data. With its intuitive interface, it allows users to easily upload, visualize, select, and manipulate molecular structures and associated data. The toolkit supports a wide range of common structural file formats and offers a variety of molecular representations to cater to different visualization needs. PlayMolecule Viewer is freely accessible at open.playmolecule.org, ensuring accessibility and availability to the scientific community and beyond.
Cited By
Smart citations by scite.ai include citation statements extracted from the full text of the citing article. The number of the statements may be higher than the number of citations provided by ACS Publications if one paper cites another multiple times or lower if scite has not yet processed some of the citing articles.
This article is cited by 6 publications.
- Ho-Joon Lee, Prashant S. Emani, Mark B. Gerstein. Improved Prediction of Ligand–Protein Binding Affinities by Meta-modeling. Journal of Chemical Information and Modeling 2024, 64
(23)
, 8684-8704. https://doi.org/10.1021/acs.jcim.4c01116
- Pedro Febrer Martinez, Valerio Rizzi, Simone Aureli, Francesco Luigi Gervasio. Host–Guest Binding Free Energies à la Carte: An Automated OneOPES Protocol. Journal of Chemical Theory and Computation 2024, 20
(22)
, 10275-10287. https://doi.org/10.1021/acs.jctc.4c01112
- Yugang Zhang, Hai He, Shuyuan Feng, Jianqiao Bi, Xuejuan Huang, Jiaying Xiong, Lianglong Chen, Hong Chen, Xiaoxi Li, Ling Chen, Jia Sun, Kun Liu. Effect of grapefruit peel pectin on the structure, pasting characteristics, and in vitro digestibility of starch under different moisture content and temperature. International Journal of Biological Macromolecules 2025, 307 , 142284. https://doi.org/10.1016/j.ijbiomac.2025.142284
- Roberta Ottria, Silvana Casati, Ornella Xynomilakis, Aleksandar Veselinović, Pierangela Ciuffreda. Discovery of MAGL Inhibition by Lophine Derivatives: An Unexpected Finding from Chemiluminescent Assay Development. Molecules 2025, 30
(7)
, 1605. https://doi.org/10.3390/molecules30071605
- Antonio Mirarchi, Toni Giorgino, Gianni De Fabritiis. mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics. Scientific Data 2024, 11
(1)
https://doi.org/10.1038/s41597-024-04140-z
- Xinyi Wang, Yangyang Zhang, Zhipeng Qi, Jiahui Xu, Jianjun Pei, Xianying Fang, Linguo Zhao. Dihydro-β-ionone production by a one-pot enzymatic cascade of a short-chain dehydrogenase NaSDR and enoate reductase AaDBR1. International Journal of Biological Macromolecules 2024, 277 , 134538. https://doi.org/10.1016/j.ijbiomac.2024.134538
Article Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.
Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.
The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated.