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Tetrahydroquinoline-Capped Histone Deacetylase 6 Inhibitor SW-101 Ameliorates Pathological Phenotypes in a Charcot–Marie–Tooth Type 2A Mouse Model

  • Sida Shen
    Sida Shen
    Department of Medicinal Chemistry and Pharmacognosy, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois 60612, United States
    More by Sida Shen
  • Cristina Picci
    Cristina Picci
    School of Health, The University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand
  • Kseniya Ustinova
    Kseniya Ustinova
    Institute of Biotechnology of the Czech Academy of Sciences, 252 50 Vestec, Czech Republic
  • Veronick Benoy
    Veronick Benoy
    Laboratory of Neurobiology, Center for Brain & Disease (VIB) and Leuven Brain Institute (LBI), KU Leuven, B-3000 Leuven, Belgium
  • Zsófia Kutil
    Zsófia Kutil
    Institute of Biotechnology of the Czech Academy of Sciences, 252 50 Vestec, Czech Republic
  • Guiping Zhang
    Guiping Zhang
    Department of Medicinal Chemistry and Pharmacognosy, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois 60612, United States
  • Maurício T. Tavares
    Maurício T. Tavares
    Department of Medicinal Chemistry and Pharmacognosy, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois 60612, United States
  • Jiří Pavlíček
    Jiří Pavlíček
    Institute of Biotechnology of the Czech Academy of Sciences, 252 50 Vestec, Czech Republic
  • Chad A. Zimprich
    Chad A. Zimprich
    Promega Corporation, Madison, Wisconsin 53711, United States
  • Matthew B. Robers
    Matthew B. Robers
    Promega Corporation, Madison, Wisconsin 53711, United States
  • Ludo Van Den Bosch
    Ludo Van Den Bosch
    Laboratory of Neurobiology, Center for Brain & Disease (VIB) and Leuven Brain Institute (LBI), KU Leuven, B-3000 Leuven, Belgium
  • Cyril Bařinka*
    Cyril Bařinka
    Institute of Biotechnology of the Czech Academy of Sciences, 252 50 Vestec, Czech Republic
    *Email: [email protected]. Phone: +420-325-873-777.
  • Brett Langley*
    Brett Langley
    School of Health, The University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand
    *Email: [email protected]. Phone: +64-7-838-4060.
  • , and 
  • Alan P. Kozikowski*
    Alan P. Kozikowski
    Bright Minds Biosciences, Toronto, ON M5H 3V9, Canada
    *Email: [email protected]. Phone: +1-773-793-5866.
Cite this: J. Med. Chem. 2021, 64, 8, 4810–4840
Publication Date (Web):April 8, 2021
https://doi.org/10.1021/acs.jmedchem.0c02210
Copyright © 2021 American Chemical Society

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    Abstract

    Abstract Image

    Histone deacetylase 6 (HDAC6) is a promising therapeutic target for the treatment of neurodegenerative disorders. SW-100 (1a), a phenylhydroxamate-based HDAC6 inhibitor (HDAC6i) bearing a tetrahydroquinoline (THQ) capping group, is a highly potent and selective HDAC6i that was shown to be effective in mouse models of Fragile X syndrome and Charcot–Marie–Tooth disease type 2A (CMT2A). In this study, we report the discovery of a new THQ-capped HDAC6i, termed SW-101 (1s), that possesses excellent HDAC6 potency and selectivity, together with markedly improved metabolic stability and druglike properties compared to SW-100 (1a). X-ray crystallography data reveal the molecular basis of HDAC6 inhibition by SW-101 (1s). Importantly, we demonstrate that SW-101 (1s) treatment elevates the impaired level of acetylated α-tubulin in the distal sciatic nerve, counteracts progressive motor dysfunction, and ameliorates neuropathic symptoms in a CMT2A mouse model bearing mutant MFN2. Taken together, these results bode well for the further development of SW-101 (1s) as a disease-modifying HDAC6i.

    Supporting Information

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.jmedchem.0c02210.

    • Results for α-tubulin/histone acetylation evaluation of HDAC6is 1b, 1e, 1f, 1g, and 1h in N2a cells (Figure S1); results for α-tubulin/histone acetylation evaluation of HDAC6is 1m, 1q, 1s, 18a–c, and 18e–g in N2a cells (Figures S2–S4); molecular docking studies on hHDAC1 (Figure S5); omit FoFc difference map (green mesh) for the zHDAC6-bound SW-101 (Figure S6); inhibition of hERG potassium channel activity by SW-101 (Figure S7); table for crystallization data collection and refinement statistics (Table S1); Mini-Ames genotoxicity assay results for SW-101 (Table S2); and 1H NMR spectra, 13C NMR spectra, and HPLC purity reports for SW-100 (1a) and SW-101 (1s) (PDF)

    • Molecular formula strings of compounds 1a–s and 18a–g including screening data (CSV)

    Accession Codes

    Atomic coordinates and corresponding structure factors for the zHDAC6-CD2/SW-101 complex have been deposited at the Protein Data Bank (PDB) as the 6ZW1 entry. Authors will release the atomic coordinates upon article publication.

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    Most electronic Supporting Information files are available without a subscription to ACS Web Editions. Such files may be downloaded by article for research use (if there is a public use license linked to the relevant article, that license may permit other uses). Permission may be obtained from ACS for other uses through requests via the RightsLink permission system: http://pubs.acs.org/page/copyright/permissions.html.

    Cited By

    This article is cited by 3 publications.

    1. Xiaoke Zhang, Qianlu Xing, Zhengxing Gou, Song Gan, Wenjuan Wang, Ziwei Li, Huawu Shao, Chaoyong Wang. Synthesis of Functionalized Tetrahydroquinoline Containing Indole Scaffold via Chemoselective Annulation of Aza-ortho-quinone Methide Precursor. ACS Omega 2023, 8 (25) , 22352-22360. https://doi.org/10.1021/acsomega.2c07036
    2. Kosuke Hashimoto, Soichiro Ide, Mayumi Arata, Akiko Nakata, Akihiro Ito, Takashi K. Ito, Norio Kudo, Bangzhong Lin, Kazuto Nunomura, Keiko Tsuganezawa, Minoru Yoshida, Yasuo Nagaoka, Takaaki Sumiyoshi. Discovery of Benzylpiperazine Derivatives as CNS-Penetrant and Selective Histone Deacetylase 6 Inhibitors. ACS Medicinal Chemistry Letters 2022, 13 (7) , 1077-1082. https://doi.org/10.1021/acsmedchemlett.2c00081
    3. Giovanni Sandrone, Cyprian D. Cukier, Karol Zrubek, Mattia Marchini, Barbara Vergani, Gianluca Caprini, Gianluca Fossati, Christian Steinkühler, Andrea Stevenazzi. Role of Fluorination in the Histone Deacetylase 6 (HDAC6) Selectivity of Benzohydroxamate-Based Inhibitors. ACS Medicinal Chemistry Letters 2021, 12 (11) , 1810-1817. https://doi.org/10.1021/acsmedchemlett.1c00425

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