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Development of Alkylated Hydrazides as Highly Potent and Selective Class I Histone Deacetylase Inhibitors with T cell Modulatory Properties
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    Development of Alkylated Hydrazides as Highly Potent and Selective Class I Histone Deacetylase Inhibitors with T cell Modulatory Properties
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    • Ping Sun
      Ping Sun
      Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, 06120 Halle/Saale, Germany
      More by Ping Sun
    • Jing Wang
      Jing Wang
      School of Biomedical Sciences, The Chinese University of Hong Kong, 999077 Hong Kong SAR, China
      More by Jing Wang
    • Khadija S. Khan
      Khadija S. Khan
      School of Biomedical Sciences, The Chinese University of Hong Kong, 999077 Hong Kong SAR, China
      School of Pharmacy, The Chinese University of Hong Kong, 999077 Hong Kong SAR, China
    • Weiqin Yang
      Weiqin Yang
      School of Biomedical Sciences, The Chinese University of Hong Kong, 999077 Hong Kong SAR, China
      More by Weiqin Yang
    • Billy Wai-Lung Ng
      Billy Wai-Lung Ng
      School of Pharmacy, The Chinese University of Hong Kong, 999077 Hong Kong SAR, China
    • Nikita Ilment
      Nikita Ilment
      Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, 06120 Halle/Saale, Germany
    • Matthes Zessin
      Matthes Zessin
      Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, 06120 Halle/Saale, Germany
    • Emre F. Bülbül
      Emre F. Bülbül
      Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, 06120 Halle/Saale, Germany
    • Dina Robaa
      Dina Robaa
      Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, 06120 Halle/Saale, Germany
      More by Dina Robaa
    • Frank Erdmann
      Frank Erdmann
      Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, 06120 Halle/Saale, Germany
    • Matthias Schmidt
      Matthias Schmidt
      Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, 06120 Halle/Saale, Germany
    • Christophe Romier
      Christophe Romier
      Département de Biologie Structurale Intégrative, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Université de Strasbourg, CNRS, INSERM, 67404 Illkirch Cedex, France
    • Mike Schutkowski
      Mike Schutkowski
      Department of Enzymology, Institute of Biotechnology, Martin-Luther University of Halle-Wittenberg, 06120 Halle/Saale, Germany
    • Alfred Sze-Lok Cheng*
      Alfred Sze-Lok Cheng
      School of Biomedical Sciences, The Chinese University of Hong Kong, 999077 Hong Kong SAR, China
      *Phone: +85239439842. E-mail: [email protected]
    • Wolfgang Sippl*
      Wolfgang Sippl
      Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, 06120 Halle/Saale, Germany
      *Phone: +493455525040. E-mail: [email protected]
    Other Access OptionsSupporting Information (3)

    Journal of Medicinal Chemistry

    Cite this: J. Med. Chem. 2022, 65, 24, 16313–16337
    Click to copy citationCitation copied!
    https://doi.org/10.1021/acs.jmedchem.2c01132
    Published November 30, 2022
    Copyright © 2022 American Chemical Society

    Abstract

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    Histone deacetylases (HDACs) are epigenetic regulators and additionally control the activity of non-histone substrates. We recently demonstrated that inhibition of HDAC8 overexpressed in various of cancers reduces hepatocellular carcinoma tumorigenicity in a T cell-dependent manner. Here, we present alkylated hydrazide-based class I HDAC inhibitors in which the n-hexyl side chain attached to the hydrazide moiety shows HDAC8 selectivity in vitro. Analysis of the mode of inhibition of the most promising compound 7d against HDAC8 revealed a substrate-competitive binding mode. 7d marked induced acetylation of the HDAC8 substrates H3K27 and SMC3 but not tubulin in CD4+ T lymphocytes, and significantly upregulated gene expressions for memory and effector functions. Furthermore, intraperitoneal injection of 7d (10 mg/kg) in C57BL/6 mice increased interleukin-2 expression in CD4+ T cells and CD8+ T cell proportion with no apparent toxicity. This study expands a novel chemotype of HDAC8 inhibitors with T cell modulatory properties for future therapeutic applications.

    Copyright © 2022 American Chemical Society

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    Supporting Information

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.jmedchem.2c01132.

    • Analytical characterization of all final compounds, including HPLC chromatograms; 1H NMR, 13C NMR, and HRMS spectra, non-enzymatic stability HPLC chromatogram for compounds 7a, 7d, and 40a; docking results of compound 7d in HDAC3, HDAC8, HDAC1, HDAC2, and HDAC6; Sirtuin2 enzymatic in vitro assay; primers used in this study; and antibodies used in this study (PDF)

    • PDB structures of HDAC-inhibitor docking complexes (ZIP)

    • Molecular formula strings (CSV)

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    Cited By

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    This article is cited by 17 publications.

    1. Daniel Stopper, Irina Honin, Felix Feller, Finn K. Hansen. Development of Ethyl-Hydrazide-Based Selective Histone Deacetylase 6 (HDAC6) PROTACs. ACS Medicinal Chemistry Letters 2025, 16 (3) , 487-495. https://doi.org/10.1021/acsmedchemlett.5c00033
    2. Fabian B. Kraft, Lukas Biermann, Linda Schäker-Hübner, Maria Hanl, Alexandra Hamacher, Matthias U. Kassack, Finn K. Hansen. Hydrazide-Based Class I Selective HDAC Inhibitors Completely Reverse Chemoresistance Synergistically in Platinum-Resistant Solid Cancer Cells. Journal of Medicinal Chemistry 2024, 67 (19) , 17796-17819. https://doi.org/10.1021/acs.jmedchem.4c01817
    3. Dina Scarpi, Claudia Capanni, Samuele Visi, Cristina Faggi, Ernesto G. Occhiato. Gold(I)-Catalyzed Rautenstrauch/Hetero-Diels–Alder/Retro-aza-Michael Cascade Reaction for the Synthesis of α-Hydrazineyl-2-cyclopentenones. The Journal of Organic Chemistry 2024, 89 (19) , 14108-14119. https://doi.org/10.1021/acs.joc.4c01518
    4. Chunlong Zhao, Jianqiu Zhang, Hangyu Zhou, Rita Setroikromo, Gerrit J. Poelarends, Frank J. Dekker. Exploration of Hydrazide-Based HDAC8 PROTACs for the Treatment of Hematological Malignancies and Solid Tumors. Journal of Medicinal Chemistry 2024, 67 (16) , 14016-14039. https://doi.org/10.1021/acs.jmedchem.4c00836
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    9. Wen-Bo Liu, Jian Song, Sai-Yang Zhang. A short overview of dual targeting HDAC inhibitors. Future Medicinal Chemistry 2025, 17 (1) , 5-7. https://doi.org/10.1080/17568919.2024.2437975
    10. Qianlong Zhao, Hongyan Liu, Jie Peng, Haoqian Niu, Jingqian Liu, Haoyu Xue, Wenjia Liu, Xinyu Liu, Huabei Hao, Xinbo Zhang, Jingde Wu. HDAC8 as a target in drug discovery: Function, structure and design. European Journal of Medicinal Chemistry 2024, 280 , 116972. https://doi.org/10.1016/j.ejmech.2024.116972
    11. Ziqian Huang, Limei Zeng, Binbin Cheng, Deping Li. Overview of class I HDAC modulators: Inhibitors and degraders. European Journal of Medicinal Chemistry 2024, 276 , 116696. https://doi.org/10.1016/j.ejmech.2024.116696
    12. Kairui Yue, Simin Sun, Enqiang Liu, Jinyu Liu, Baogeng Hou, Kangjing Qi, C. James Chou, Yuqi Jiang, Xiaoyang Li. HDAC/NAMPT dual inhibitors overcome initial drug-resistance in p53-null leukemia cells. European Journal of Medicinal Chemistry 2024, 266 , 116127. https://doi.org/10.1016/j.ejmech.2024.116127
    13. Fady Baselious, Sebastian Hilscher, Dina Robaa, Cyril Barinka, Mike Schutkowski, Wolfgang Sippl. Comparative Structure-Based Virtual Screening Utilizing Optimized AlphaFold Model Identifies Selective HDAC11 Inhibitor. International Journal of Molecular Sciences 2024, 25 (2) , 1358. https://doi.org/10.3390/ijms25021358
    14. Suvankar Banerjee, Sandip Kumar Baidya, Nilanjan Adhikari, Tarun Jha, Balaram Ghosh. Hydrazides as Potential HDAC Inhibitors: Structure-activity Relationships and Biological Implications. Current Topics in Medicinal Chemistry 2023, 23 (25) , 2343-2372. https://doi.org/10.2174/1568026623666230405124207
    15. Emre F. Bülbül, Dina Robaa, Ping Sun, Fereshteh Mahmoudi, Jelena Melesina, Matthes Zessin, Mike Schutkowski, Wolfgang Sippl. Application of Ligand- and Structure-Based Prediction Models for the Design of Alkylhydrazide-Based HDAC3 Inhibitors as Novel Anti-Cancer Compounds. Pharmaceuticals 2023, 16 (7) , 968. https://doi.org/10.3390/ph16070968
    16. Madison E Carelock, Rohan P Master, Myung-Chul Kim, Zeng Jin, Lei Wang, Chandra K Maharjan, Nan Hua, Umasankar De, Ryan Kolb, Yufeng Xiao, Daiqing Liao, Guangrong Zheng, Weizhou Zhang. Targeting intracellular proteins with cell type-specific functions for cancer immunotherapy. Life Medicine 2023, 2 (3) https://doi.org/10.1093/lifemedi/lnad019
    17. Srinidhi Rajaraman, Ranjani Balakrishnan, Dhruv Deshmukh, Abhiram Ganorkar, Swati Biswas, Sravani Pulya, Balaram Ghosh. HDAC8 As an Emerging Target in Drug Discovery With Special Emphasis on Medicinal Chemistry. Future Medicinal Chemistry 2023, 15 (10) , 885-908. https://doi.org/10.4155/fmc-2023-0054
    18. Brendan Moran, Maria Davern, John V. Reynolds, Noel E. Donlon, Joanne Lysaght. The impact of histone deacetylase inhibitors on immune cells and implications for cancer therapy. Cancer Letters 2023, 559 , 216121. https://doi.org/10.1016/j.canlet.2023.216121

    Journal of Medicinal Chemistry

    Cite this: J. Med. Chem. 2022, 65, 24, 16313–16337
    Click to copy citationCitation copied!
    https://doi.org/10.1021/acs.jmedchem.2c01132
    Published November 30, 2022
    Copyright © 2022 American Chemical Society

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