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Valhidepsin Lipopeptides from Chromobacterium vaccinii: Structures, Biosynthesis, and Coregulation with FR900359 Production

  • Dominik Pistorius*
    Dominik Pistorius
    Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Novartis Pharma AG, Novartis Campus, 4056 Basel, Switzerland
    *Phone: +41 792299811. Email: [email protected]
  • Kathrin Buntin
    Kathrin Buntin
    Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Novartis Pharma AG, Novartis Campus, 4056 Basel, Switzerland
  • Etienne Richard
    Etienne Richard
    Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Novartis Pharma AG, Novartis Campus, 4056 Basel, Switzerland
  • Michael Rust
    Michael Rust
    Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Novartis Pharma AG, Novartis Campus, 4056 Basel, Switzerland
    More by Michael Rust
  • Caroline Bouquet
    Caroline Bouquet
    Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Novartis Pharma AG, Novartis Campus, 4056 Basel, Switzerland
  • Séverine Wollbrett
    Séverine Wollbrett
    Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Novartis Pharma AG, Novartis Campus, 4056 Basel, Switzerland
  • Eric Weber
    Eric Weber
    Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Novartis Pharma AG, Novartis Campus, 4056 Basel, Switzerland
    More by Eric Weber
  • Daniele Dietschin
    Daniele Dietschin
    Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Novartis Pharma AG, Novartis Campus, 4056 Basel, Switzerland
  • Robert Bruccoleri
    Robert Bruccoleri
    Congenomics, LLC, Glastonbury, Connecticut 06033, United States
  • Edward Oakeley
    Edward Oakeley
    Chemical Biology & Therapeutics, Novartis Institutes for BioMedical Research, Novartis Pharma AG, Novartis Campus, 4056 Basel, Switzerland
  • , and 
  • Frank Petersen
    Frank Petersen
    Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Novartis Pharma AG, Novartis Campus, 4056 Basel, Switzerland
Cite this: J. Nat. Prod. 2023, 86, 2, 246–255
Publication Date (Web):February 6, 2023
https://doi.org/10.1021/acs.jnatprod.2c00825
Copyright © 2023 American Chemical Society and American Society of Pharmacognosy

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Abstract

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Microbial secondary metabolites continue to provide a valuable source of both chemical matter and inspiration for drug discovery in a broad range of therapeutic areas. Beyond this, the corresponding microorganisms represent a sustainable modality for biotechnological production of structurally complex molecules at the quantities required for drug development or even commercial manufacturing. Chromobacterium vaccinii, which has recently been reported as a producer of the pharmacologically highly important Gq inhibitor FR900359 (FR), represents such an example. The characterization of an orphan biosynthetic gene cluster (BGC) located directly downstream of the frs BCG led to the discovery of eight new lipopeptides, valhidepsins A–H (18), produced by C. vaccinii. Their chemical structures were elucidated through analysis of 1D and 2D NMR data and high-resolution MS/MS fragmentation methods. The valhidepsins did not display significant antibiotic nor cytotoxic activities but showed surfactant properties. The cluster–compound correlation was demonstrated by generation of a knockout mutant, which abolished production of valhidepsins. This knockout mutant yielded a significantly increased isolated yield of FR.

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The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.jnatprod.2c00825.

  • Additional experimental procedures; 1H NMR, 13C NMR, 1H–1H COSY, 1H–13C HSQC, 1H–13C HMBC, 1H–1H ROESY spectra; fragment ion annotations; Marfey’s analyses; further bioinformatic analyses; stability assessment (PDF)

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