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αB-Crystallin Chaperone Inhibits Aβ Aggregation by Capping the β-Sheet-Rich Oligomers and Fibrils

Cite this: J. Phys. Chem. B 2020, 124, 45, 10138–10146
Publication Date (Web):October 29, 2020
https://doi.org/10.1021/acs.jpcb.0c07256
Copyright © 2020 American Chemical Society

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    Abstract

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    Inhibiting the cytotoxicity of amyloid aggregation by endogenous proteins is a promising strategy against degenerative amyloid diseases due to their intrinsically high biocompatibility and low immunogenicity. In this study, we investigated the inhibition mechanism of the structured core region of αB-crystallin (αBC) against Aβ fibrillization using discrete molecular dynamics simulations. Our computational results recapitulated the experimentally observed Aβ binding sites in αBC and suggested that αBC could bind to various Aβ aggregate species during the aggregation process—including monomers, dimers, and likely other high molecular weight oligomers, protofibrils, and fibrils—by capping the exposed β-sheet elongation surfaces. Thus, the nucleation of Aβ oligomers into fibrils and the fibril growth could be inhibited. Mechanistic insights obtained from our systematic computational studies may aid in the development of novel therapeutic strategies to modulate the aggregation of pathological, amyloidogenic protein in degenerative diseases.

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.jpcb.0c07256.

    • Averaged secondary structure propensities for each Aβ residue in the Aβ–αBC complex, for each residue of Aβ monomer in the absence and presence of αBC dimer, of each Aβ residue in DMD simulations of Aβ dimerization in the absence and presence of αBC dimer; dimerization kinetics of Aβ in the absence and presence of αBC dimer as monitored by time evolution of average number of inter-Aβ backbone hydrogen bonds (PDF)

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    Cited By

    This article is cited by 11 publications.

    1. Ying Wang, Jia Xu, Fengjuan Huang, Jiajia Yan, Xinjie Fan, Yu Zou, Chuang Wang, Feng Ding, Yunxiang Sun. SEVI Inhibits Aβ Amyloid Aggregation by Capping the β-Sheet Elongation Edges. Journal of Chemical Information and Modeling 2023, 63 (11) , 3567-3578. https://doi.org/10.1021/acs.jcim.3c00414
    2. Fengjuan Huang, Ying Wang, Yu Zhang, Chuang Wang, Jiangfang Lian, Feng Ding, Yunxiang Sun. Dissecting the Self-assembly Dynamics of Imperfect Repeats in α-Synuclein. Journal of Chemical Information and Modeling 2023, 63 (11) , 3591-3600. https://doi.org/10.1021/acs.jcim.3c00533
    3. Yu Zhang, Ying Wang, Yuying Liu, Guanghong Wei, Feng Ding, Yunxiang Sun. Molecular Insights into the Misfolding and Dimerization Dynamics of the Full-Length α-Synuclein from Atomistic Discrete Molecular Dynamics Simulations. ACS Chemical Neuroscience 2022, 13 (21) , 3126-3137. https://doi.org/10.1021/acschemneuro.2c00531
    4. Zhengdong Xu, Yehong Gong, Yu Zou, Jiaqian Wan, Jiaxing Tang, Chendi Zhan, Guanghong Wei, Qingwen Zhang. Dissecting the Inhibitory Mechanism of the αB-Crystallin Domain against Aβ42 Aggregation and Its Effect on Aβ42 Protofibrils: A Molecular Dynamics Simulation Study. ACS Chemical Neuroscience 2022, 13 (19) , 2842-2851. https://doi.org/10.1021/acschemneuro.2c00224
    5. Mengjuan Zhao, Cong Guo. Multipronged Regulatory Functions of Serum Albumin in Early Stages of Amyloid-β Aggregation. ACS Chemical Neuroscience 2021, 12 (13) , 2409-2420. https://doi.org/10.1021/acschemneuro.1c00150
    6. Huan He, Yuying Liu, Yunxiang Sun, Feng Ding. Misfolding and Self-Assembly Dynamics of Microtubule-Binding Repeats of the Alzheimer-Related Protein Tau. Journal of Chemical Information and Modeling 2021, 61 (6) , 2916-2925. https://doi.org/10.1021/acs.jcim.1c00217
    7. Fengjuan Huang, Yuying Liu, Ying Wang, Jia Xu, Jiangfang Lian, Yu Zou, Chuang Wang, Feng Ding, Yunxiang Sun. Co-aggregation of α-synuclein with amyloid-β stabilizes β-sheet-rich oligomers and enhances the formation of β-barrels. Physical Chemistry Chemical Physics 2023, 16 https://doi.org/10.1039/D3CP04138G
    8. Yuying Liu, Ying Wang, Chaohui Tong, Guanghong Wei, Feng Ding, Yunxiang Sun. Molecular Insights into the Self‐Assembly of Block Copolymer Suckerin Polypeptides into Nanoconfined β‐Sheets. Small 2022, 18 (34) https://doi.org/10.1002/smll.202202642
    9. Hisashi Okumura, Satoru G. Itoh. Molecular Dynamics Simulation Studies on the Aggregation of Amyloid-β Peptides and Their Disaggregation by Ultrasonic Wave and Infrared Laser Irradiation. Molecules 2022, 27 (8) , 2483. https://doi.org/10.3390/molecules27082483
    10. Yu Zhang, Yuying Liu, Wenhui Zhao, Yunxiang Sun. Hydroxylated single-walled carbon nanotube inhibits β2m21–31 fibrillization and disrupts pre-formed proto-fibrils. International Journal of Biological Macromolecules 2021, 193 , 1-7. https://doi.org/10.1016/j.ijbiomac.2021.10.103
    11. Huisi Xie, Cong Guo. Albumin Alters the Conformational Ensemble of Amyloid-β by Promiscuous Interactions: Implications for Amyloid Inhibition. Frontiers in Molecular Biosciences 2021, 7 https://doi.org/10.3389/fmolb.2020.629520

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