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Rotational Dynamics of Water near Osmolytes by Molecular Dynamics Simulations
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    Rotational Dynamics of Water near Osmolytes by Molecular Dynamics Simulations
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    The Journal of Physical Chemistry B

    Cite this: J. Phys. Chem. B 2024, 128, 20, 5008–5017
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    https://doi.org/10.1021/acs.jpcb.3c08470
    Published May 10, 2024
    Copyright © 2024 American Chemical Society

    Abstract

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    The behavior of water molecules around organic molecules has attracted considerable attention as a crucial factor influencing the properties and functions of soft matter and biomolecules. Recently, it has been suggested that the change in protein stability upon the addition of small organic molecules (osmolytes) is dominated by the change in the water dynamics caused by the osmolyte, where the dynamics of not only the directly interacting water molecules but also the long-range hydration layer affect the protein stability. However, the relation between the long-range structure of hydration water in various solutions and the water dynamics remains unclear at the molecular level. We performed density-functional tight-binding molecular dynamics simulations to elucidate the varying rotational dynamics of water molecules in 15 osmolyte solutions. A positive correlation was observed between the rotational relaxation time and our proposed normalized parameter obtained by dividing the number of hydrogen bonds between water molecules by the number of nearest-neighbor water molecules. For the 15 osmolyte solutions, an increase or a decrease in the value of the normalized parameter for the second hydration shell tended to result in water molecules with slow and fast rotational dynamics, respectively, thus illustrating the importance of the second hydration shell for the rotational dynamics of water molecules. Our simulation results are anticipated to advance the current understanding of water dynamics around organic molecules and the long-range structure of water molecules.

    Copyright © 2024 American Chemical Society

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.jpcb.3c08470.

    • Figures of rotational correlation of water molecules, the relaxation time estimated by two different methods, the difference in the probability density distribution of the rotational relaxation time for osmolytes, radial distribution functions, the normalized values of hydrogen bond networks, and the rotational relaxation time around osmolytes in the DFTB-MD; and classical molecular dynamics methods, the rotational relaxation time versus the normalized values of hydrogen bond network, trajectories of rotational correlation, simulation snapshots, radial distribution functions, the normalized values of hydrogen bond networks, and the rotational relaxation time around osmolytes in the classical MD (PDF)

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    This article is cited by 4 publications.

    1. Md. Khalidur Rahman, Takeshi Yamada, Norifumi L. Yamada, Yuji Higuchi, Hideki Seto. Hydration Water Dynamics in Zwitterionic Phospholipid Membranes Mixed with Charged Phospholipids. The Journal of Physical Chemistry B 2025, 129 (16) , 3998-4004. https://doi.org/10.1021/acs.jpcb.4c07371
    2. Jiwon Seo, Ravi Singh, Jun-Ho Choi. Microscopic Heterogeneity Driven by Molecular Aggregation and Water Dynamics in Aqueous Osmolyte Solutions. Journal of Chemical Information and Modeling 2025, 65 (4) , 1940-1952. https://doi.org/10.1021/acs.jcim.4c01857
    3. Masaru TANAKA. Characterization of the Hydrated Bio/materials Interface and Development of Medical Devices. Oleoscience 2025, 25 (4) , 133-143. https://doi.org/10.5650/oleoscience.25.133
    4. Mafumi HISHIDA. Observation of Hydration State by Terahertz Spectroscopy and the Role of Hydration Water in Protein Stabilization. Seibutsu Butsuri 2024, 64 (6) , 299-302. https://doi.org/10.2142/biophys.64.299

    The Journal of Physical Chemistry B

    Cite this: J. Phys. Chem. B 2024, 128, 20, 5008–5017
    Click to copy citationCitation copied!
    https://doi.org/10.1021/acs.jpcb.3c08470
    Published May 10, 2024
    Copyright © 2024 American Chemical Society

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