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Benzoyl Chloride Derivatization Advances the Quantification of Dissolved Polar Metabolites on Coral Reefs
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    Benzoyl Chloride Derivatization Advances the Quantification of Dissolved Polar Metabolites on Coral Reefs
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    • Brianna M. Garcia
      Brianna M. Garcia
      Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, United States
    • Cynthia C. Becker
      Cynthia C. Becker
      Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, United States
    • Laura Weber
      Laura Weber
      Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, United States
      More by Laura Weber
    • Gretchen J. Swarr
      Gretchen J. Swarr
      Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, United States
    • Melissa C. Kido Soule
      Melissa C. Kido Soule
      Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, United States
    • Amy Apprill*
      Amy Apprill
      Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, United States
      *Email: [email protected]. Phone: (508) 289-2649.
      More by Amy Apprill
    • Elizabeth B. Kujawinski*
      Elizabeth B. Kujawinski
      Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, United States
      *Email: [email protected]. Phone: (508) 289-3493.
    Other Access OptionsSupporting Information (2)

    Journal of Proteome Research

    Cite this: J. Proteome Res. 2024, 23, 6, 2041–2053
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    https://doi.org/10.1021/acs.jproteome.4c00049
    Published May 23, 2024
    Copyright © 2024 The Authors. Published by American Chemical Society

    Abstract

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    Extracellular chemical cues constitute much of the language of life among marine organisms, from microbes to mammals. Changes in this chemical pool serve as invisible signals of overall ecosystem health and disruption to this finely tuned equilibrium. In coral reefs, the scope and magnitude of the chemicals involved in maintaining reef equilibria are largely unknown. Processes involving small, polar molecules, which form the majority components of labile dissolved organic carbon, are often poorly captured using traditional techniques. We employed chemical derivatization with mass spectrometry-based targeted exometabolomics to quantify polar dissolved phase metabolites on five coral reefs in the U.S. Virgin Islands. We quantified 45 polar exometabolites, demonstrated their spatial variability, and contextualized these findings in terms of geographic and benthic cover differences. By comparing our results to previously published coral reef exometabolomes, we show the novel quantification of 23 metabolites, including central carbon metabolism compounds (e.g., glutamate) and novel metabolites such as homoserine betaine. We highlight the immense potential of chemical derivatization-based exometabolomics for quantifying labile chemical cues on coral reefs and measuring molecular level responses to environmental stressors. Overall, improving our understanding of the composition and dynamics of reef exometabolites is vital for effective ecosystem monitoring and management strategies.

    Copyright © 2024 The Authors. Published by American Chemical Society

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    Supporting Information

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.jproteome.4c00049.

    • Additional detailed information on the chemicals and standards used; TOC and microbial abundance measurements; BC derivatization method, targeted metabolomics UHPLC-MS/MS gradient, mass spectrometer settings, LC–MS QA/QC, metabolite quantification and LOD calculations, and data processing QA/QC; additional analysis results, including differences between Fish bay and Lameshur bay, metabolite comparison, and relationship between reef benthic composition and dissolved metabolites; sampling site details and number of metabolites detected/quantified; Bubbleplot of BC and SPE metabolite comparison; NMDS and PCA ordinations of benthos and metabolome; proportion of total coral coverage across reefs; flow cytometry and inorganic nutrient measurements across reefs; benthic proportions of each coral reef; and ratio of coral to macroalgae across reefs (PDF)

    • List of metabolite standards targeted in this study and their corresponding calibration curve outputs (R2, number of points, LOD, and LOQ); sample metadata and metabolite quantification results; coral exometabolome metabolite comparison between current study using BC derivatization and four nonderivatized SPE datasets; statistical results (PERMANOVA, Kruskal–Wallis, and Wilcoxon rank sum test) for benthic composition differences between reefs and bay; statistical results (PERMANOVA, Kruskal–Wallis, and Wilcoxon rank sum test) for flow cytometry and nutrient differences between reefs and bay; statistical results (PERMANOVA, Kruskal–Wallis, and Wilcoxon rank sum test) for metabolite differences between reefs and bay; metabolite summary showcasing median, average, and standard deviation of metabolite concentrations across reef replicates, the number of replicates detected in, and their corresponding LOD/LOQs; and Spearman correlation results between benthic composition proportions and metabolite concentrations (XLSX)

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    Journal of Proteome Research

    Cite this: J. Proteome Res. 2024, 23, 6, 2041–2053
    Click to copy citationCitation copied!
    https://doi.org/10.1021/acs.jproteome.4c00049
    Published May 23, 2024
    Copyright © 2024 The Authors. Published by American Chemical Society

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