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Cationic Copolymer-Augmented DNA Hybridization Chain Reaction

Cite this: ACS Appl. Mater. Interfaces 2022, 14, 34, 39396–39403
Publication Date (Web):August 16, 2022
https://doi.org/10.1021/acsami.2c11548
Copyright © 2022 American Chemical Society

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    Abstract

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    Various DNA assembly techniques and structures have emerged with the continuous progress of DNA nanotechnology. DNA hybridization chain reaction (HCR) is a representative example owing to isothermal and enzyme-free features. However, HCR is time consuming and is inhibited by nucleases present in biological samples. Herein, we demonstrated that a cationic copolymer, poly(l-lysine)-graft-dextran (PLL-g-Dex), significantly facilitated HCR and increased its initiator sensitivity by 40-fold. PLL-g-Dex promoted the generation of HCR products with high molecular weight by accelerating the initiation and the subsequent growth steps of HCR. Moreover, PLL-g-Dex protected the HCR system from nucleases, permitting HCR in the presence of serum components. Addition of PLL-g-Dex is a universal and efficient strategy that does not require optimization of the reactor setup or DNA sequences, thus laying a solid foundation for the wider application of HCR.

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acsami.2c11548.

    • Real-time fluorescence assay of initiation and second step, gel analysis, effect of copolymer on HCR-l7, copolymer concentration dependency, temperature dependency, initiator sensitivity of HCR under high-salt condition, and list of oligos in this study (PDF)

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    Cited By

    This article is cited by 3 publications.

    1. Qianshan Chen, Lingfeng Wu, Feng Zhao, Bing Liu, Zhaoyang Wu, Ruqin Yu. Construction of hybridization chain reaction induced optical signal directed change of photonic crystals-DNA hydrogel sensor and its visual determination for aflatoxin B1. Food Chemistry 2023, 418 , 135891. https://doi.org/10.1016/j.foodchem.2023.135891
    2. Rui Qin, Shuang Cui, Xiaokang Zhang, Peijun Shi, Shihua Zhou, Bin Wang. Programming DNA Reaction Networks Using Allosteric DNA Hairpins. Biomolecules 2023, 13 (3) , 481. https://doi.org/10.3390/biom13030481
    3. Qianshan Chen, Lingfeng Wu, Feng Zhao, Bing Liu, Zhaoyang Wu, Ru-Qin Yu. Construction of Hcr-Induced Optical Signal Directed Change of Photonic Crystals-Dna Hydrogel Sensor and its Visual Determination for Afb1. SSRN Electronic Journal 2023, 53 https://doi.org/10.2139/ssrn.4353461

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