Methionine-Rich Loop of Multicopper Oxidase McoA Follows Open-to-Close Transitions with a Role in Enzyme Catalysis
- Patrícia T. BorgesPatrícia T. BorgesInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, PortugalMore by Patrícia T. Borges,
- Vânia BrissosVânia BrissosInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, PortugalMore by Vânia Brissos,
- Guillem HernandezGuillem HernandezInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, PortugalMore by Guillem Hernandez,
- Laura MasgrauLaura MasgrauZymvol Biomodeling, Carrer Roc Boronat, 117, 08018 Barcelona, SpainDepartment of Chemistry, Universitat Autònoma de Barcelona, 08193 Bellaterra, SpainMore by Laura Masgrau,
- Maria Fátima LucasMaria Fátima LucasZymvol Biomodeling, Carrer Roc Boronat, 117, 08018 Barcelona, SpainMore by Maria Fátima Lucas,
- Emanuele MonzaEmanuele MonzaZymvol Biomodeling, Carrer Roc Boronat, 117, 08018 Barcelona, SpainMore by Emanuele Monza,
- Carlos Frazão*Carlos Frazão*Email: [email protected]Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, PortugalMore by Carlos Frazão,
- Tiago N. Cordeiro*Tiago N. Cordeiro*Email: [email protected]Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, PortugalMore by Tiago N. Cordeiro, and
- Lígia O. Martins*Lígia O. Martins*Email: [email protected]Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, PortugalMore by Lígia O. Martins
Abstract

Multicopper oxidases oxidize a vast range of aromatic substrates coupled to the reduction of molecular oxygen to water. A vast broad spectrum of applications reflects their high biotechnological importance. The crystal structure of McoA from the hyperthermophilic bacteria Aquifex aeolicus has the most tightly compact and hydrophobic core among its prokaryotic counterparts. A 29-residue long loop enriched in glycines and methionines (Met-loop) close to the active T1 Cu center is not detected in the electron density maps. Accurate prediction of loop structures remains challenging, especially for long segments with sizable conformational space. Therefore, a combination of Rosetta and molecular dynamics simulations with ensemble-based small-angle X-ray scattering analysis was used to probe the conformational landscape of the Met-loop. The results indicate a highly flexible omega-loop, which is nevertheless not random but preferentially follows open-to-close transitions, exposing or occluding the T1 Cu site. Loop-truncated variants maintain wild-type stability and consistently lower and higher catalytic efficiencies (kcat/Km) for organic and metal substrates, respectively. Our results suggest that the loop transient dynamic equilibrium can exert important switch-like regulatory function, defining a role for Met-rich motifs as dynamic gate-gappers. This work provides insights into the dynamics of Met-rich loops essential to understand the molecular determinants of substrate promiscuity and catalytic rates within multicopper oxidases. We anticipate that engineering the Met-loop structural dynamics will unleash important changes in enzyme function and specificity with impact on their applications.




