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Discovery and Optimization of Inhibitors of the Parkinson’s Disease Associated Protein DJ-1

  • Shinya Tashiro
    Shinya Tashiro
    Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
    Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan
  • Jose M. M. Caaveiro*
    Jose M. M. Caaveiro
    Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
    Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan
    Laboratory of Global Healthcare, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka 812-8582, Japan
    *E-mail: [email protected]
  • Makoto Nakakido
    Makoto Nakakido
    Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
    Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan
  • Aki Tanabe
    Aki Tanabe
    Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
    More by Aki Tanabe
  • Satoru Nagatoishi
    Satoru Nagatoishi
    Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
    Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan
  • Yasushi Tamura
    Yasushi Tamura
    Department of Material and Biological Chemistry, Faculty of Science, Yamagata University, Yamagata 990-8560, Japan
  • Noriyuki Matsuda
    Noriyuki Matsuda
    Ubiquitin Project, Tokyo Metropolitan Institute of Medical Science, 2-1-6 Kamikitazawa, Setagaya, Tokyo 156-8506, Japan
  • Dali Liu
    Dali Liu
    Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States
    More by Dali Liu
  • Quyen Q. Hoang
    Quyen Q. Hoang
    Stark Neurosciences Research Institute  and  Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202, United States
  • , and 
  • Kouhei Tsumoto*
    Kouhei Tsumoto
    Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
    Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan
    Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, Tokyo 108-8639, Japan
    *E-mail: [email protected]
Cite this: ACS Chem. Biol. 2018, 13, 9, 2783–2793
Publication Date (Web):July 31, 2018
https://doi.org/10.1021/acschembio.8b00701
Copyright © 2018 American Chemical Society

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    Supporting Info (1)»

    Abstract

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    DJ-1 is a Parkinson’s disease associated protein endowed with enzymatic, redox sensing, regulatory, chaperoning, and neuroprotective activities. Although DJ-1 has been vigorously studied for the past decade and a half, its exact role in the progression of the disease remains uncertain. In addition, little is known about the spatiotemporal regulation of DJ-1, or the biochemical basis explaining its numerous biological functions. Progress has been hampered by the lack of inhibitors with precisely known mechanisms of action. Herein, we have employed biophysical methodologies and X-ray crystallography to identify and to optimize a family of compounds inactivating the critical Cys106 residue of human DJ-1. We demonstrate these compounds are potent inhibitors of various activities of DJ-1 in vitro and in cell-based assays. This study reports a new family of DJ-1 inhibitors with a defined mechanism of action, and contributes toward the understanding of the biological function of DJ-1.

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    The Supporting Information is available free of charge on the ACS Publications website at DOI: 10.1021/acschembio.8b00701.

    • Twelve supporting figures and six supporting tables (PDF)

    Accession Codes

    Coordinates and structure factors of DJ-1 after back-soaking (accession code 6AF5), DJ-1 in complex with 1 (high concentration, accession code 6AF9), with 1 (low concentration, accession code 6AFA), with 4 (accession code 6AFC), with 6 (accession code 6AFD), with 7 (accession code 6AFE), with 8 (accession code 6AFF), with 9 (accession code 6AFG), with 10 (accession code 6AFH), with 11 (accession code 6AFI), with 13 (accession code 6AFJ), with 15 (accession code 6AFL), unbound DJ-1 C106S (accession code 6AF7), and DJ-1 C106S in complex with 1 (accession code 6AFB), have been deposited in the Protein Data Bank.

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    Most electronic Supporting Information files are available without a subscription to ACS Web Editions. Such files may be downloaded by article for research use (if there is a public use license linked to the relevant article, that license may permit other uses). Permission may be obtained from ACS for other uses through requests via the RightsLink permission system: http://pubs.acs.org/page/copyright/permissions.html.

    Cited By

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