Enhancing Global Estimation of Fine Particulate Matter Concentrations by Including Geophysical a Priori Information in Deep LearningClick to copy article linkArticle link copied!
- Siyuan Shen*Siyuan Shen*Email: [email protected]Department of Energy, Environmental, and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri 63130, United StatesMore by Siyuan Shen
- Chi LiChi LiDepartment of Energy, Environmental, and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri 63130, United StatesMore by Chi Li
- Aaron van DonkelaarAaron van DonkelaarDepartment of Energy, Environmental, and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri 63130, United StatesMore by Aaron van Donkelaar
- Nathan JacobsNathan JacobsDepartment of Computer Science and Engineering, Washington University in St. Louis, St. Louis, Missouri 63130, United StatesMore by Nathan Jacobs
- Chenguang WangChenguang WangDepartment of Computer Science and Engineering, Washington University in St. Louis, St. Louis, Missouri 63130, United StatesMore by Chenguang Wang
- Randall V. MartinRandall V. MartinDepartment of Energy, Environmental, and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri 63130, United StatesDepartment of Computer Science and Engineering, Washington University in St. Louis, St. Louis, Missouri 63130, United StatesMore by Randall V. Martin
Abstract
Global fine particulate matter (PM2.5) assessment is impeded by a paucity of monitors. We improve estimation of the global distribution of PM2.5 concentrations by developing, optimizing, and applying a convolutional neural network with information from satellite-, simulation-, and monitor-based sources to predict the local bias in monthly geophysical a priori PM2.5 concentrations over 1998–2019. We develop a loss function that incorporates geophysical a priori estimates and apply it in model training to address the unrealistic results produced by mean-square-error loss functions in regions with few monitors. We introduce novel spatial cross-validation for air quality to examine the importance of considering spatial properties. We address the sharp decline in deep learning model performance in regions distant from monitors by incorporating the geophysical a priori PM2.5. The resultant monthly PM2.5 estimates are highly consistent with spatial cross-validation PM2.5 concentrations from monitors globally and regionally. We withheld 10% to 99% of monitors for testing to evaluate the sensitivity and robustness of model performance to the density of ground-based monitors. The model incorporating the geophysical a priori PM2.5 concentrations remains highly consistent with observations globally even under extreme conditions (e.g., 1% for training, R2 = 0.73), while the model without exhibits weaker performance (1% for training, R2 = 0.51).
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Synopsis
This study examines the value of incorporating geophysical a priori information into a deep learning model on fine particulate matter air pollution.
1. Introduction
2. Data Sources and Methods
2.1. Structure of the Convolutional Neural Network
Figure 1
Figure 1. Input array and structure of the residual convolutional neural network. The left panel shows the input array. The gridded square indicates the 11 × 11 pixel image of predictor variables cropped around a pixel of interest (blue pixel). The right panel shows the structure of the residual convolutional neural network. Rectangles represent the structure of the residual CNN, with blue for convolutional layers, pink for pooling layers, and orange for the flatten layer. Blue lines represent skip connections. Numbers in each convolutional layer indicate the number of input channels, the number of output channels, the width of the kernel, and the height of the kernel. Numbers in the pooling layer indicate the size of kernels. PM2.5,bias is defined as geophysical a priori PM2.5 minus “true” PM2.5.
2.2. Incorporation of Ground-Based PM2.5 Measurement Data
Figure 2
2.3. Processing of Predictor Variables
Variables | Source | Initial Spatial Resolutionb | Number of variables | |
---|---|---|---|---|
Geophysical a priori PM2.5 | van Donkelaar et al. (39) | 0.01° × 0.01° | 1 | * |
Satellite retrieved AOD | Multiple satellite sources (39) | 0.01° × 0.01° | 1 | |
η | GEOS-Chem | 0.05° × 0.625° or 2.0° × 2.5° | 1 | * |
Uncertainties of η: (1) From differences in simulated and retrieved AOD at simulation scales; (2) From large vertical gradients; (3) From topographic features at subgrid scale; (4) From aerosol features at subgrid scale within η; (5) From coastal effects at subgrid scale | van Donkelaar et al. (26) | 0.01° × 0.01° | 5 | * |
GEOS-Chem outputs: Concentrations of PM2.5, nitrate, sulfate, ammonium, black carbon (BC), organic carbon (OC), secondary organic aerosols (SOA), dust, and sea salt | GEOS-Chem V11–01; using simulation-specific updates described by Hammer et al. (6) | 0.5° × 0.625° or 2.0° × 2.5° | 9 | * |
Latitude and longitude | 0.01° × 0.01° | 2 | ||
Elevation | GMTED2010 | 0.01° × 0.01° | 1 | |
Surface BC and OC emissions | Community Emissions Data System (CEDS) (40) | 0.5° × 0.625° | 2 | |
Mineral dust and sea salt emissions | GEOS-Chem input | 0.5° × 0.625° | 2 | |
Meteorology fields─planetary boundary layer height (PBLH), relative humidity (RH), wind speeds (u, v), and temperature | Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA2) | 0.5° × 0.625° | 5 |
Variables with * are excluded in the CNN model without a priori PM2.5 estimations input in the robustness test.
The spatial resolution for GEOS-Chem output is 0.5° × 0.625° over the boxed regions of Figure 2 and 2° × 2.5° elsewhere.
2.4. Improvement of Loss Function
MSE loss function:
Model Name | Development | Description |
---|---|---|
MSE Model | MSE loss function: ![]() | Model trained with the MSE loss function. |
adj-MSE Model | Adj-MSE loss function: ![]() | Model trained with the adj-MSE loss function. |
Standard Model | Adj-GeoMSE loss function: ![]() | Model trained with the adj-GeoMSE loss function. |
Optimized Model | Adj-GeoMSE loss function: ![]() | Model trained with the adj-GeoMSE loss function. An additional geographically weighted average approach is applied if the distance of a pixel to the nearest ground monitor exceeds 150 km. |
Optimized: ![]() |
Adjusted MSE loss function (adj-MSE):
Adjusted MSE loss function with geophysical penalty terms (adj-GeoMSE):
2.5. Traditional and Sparse Robustness Tests
2.6. Buffer Leave-One-Out (B-LOO) Spatial CV
Figure 3
Figure 3. Assessment of spatial autocorrelation using normalized semivariance of the observed PM2.5 versus distance (left) and normalized semivariance of training matrix versus distance (right).
Figure 4
Figure 4. Example distribution of buffer zones with a radius of 500 kilometers over the global range (top) and with a radius of 200 kilometers over North America (bottom). Pink shading indicates circular buffer zones in which sites are excluded from training around test sites as part of buffer leave-one-out (B-LOO) spatial cross-validation.
3. Results and Discussion
3.1. Performance of the Optimized Model Using Traditional Cross-Validation
Region and month | Optimized Model R2 | MSE Model R2 | Hybrid GWR R2 | Optimized Model rRMSE | Hybrid GWR rRMSE | Optimized Model slope | Population-weighted co-monitorb mean PM2.5 (optimized model) [μg/m3] | population-weighted monitor means PM2.5 (in situ) [μg/m3] |
---|---|---|---|---|---|---|---|---|
Globalc annual | 0.86 [0.83,0.88] | 0.86 [0.83,0.89] | 0.84 [0.81,0.86] | 0.34 [0.33,0.35] | 0.37 [0.35,0.39] | 1.00 [0.99,1.00] | 37.4 [34.7,40.9] | 36.9 [34.3,40.7] |
JAN | 0.87 [0.86,0.89] | 0.88 [0.86,0.90] | 0.86 [0.84,0.88] | 0.39 [0.38,0.40] | 0.42 [0.41,0.43] | 1.00 [1.00,1.00] | 56.3 [52.5,61.2] | 55.7 [51.8,60.8] |
APR | 0.83 [0.79,0.85] | 0.83 [0.79,0.85] | 0.81 [0.78,0.84] | 0.38 [0.37,0.39] | 0.40 [0.39,0.41] | 1.00 [0.99,1.00] | 34.7 [32.1,37.5] | 34.4 [31.6,37.5] |
JUL | 0.75 [0.67,0.80] | 0.75 [0.69,0.80] | 0.72 [0.67,0.77] | 0.42 [0.41,0.45] | 0.46 [0.44,0.48] | 0.98 [0.97,0.99] | 26.2 [24.1,30.0] | 25.7 [23.6,29.6] |
OCT | 0.81 [0.78,0.84] | 0.81 [0.79,0.84] | 0.78 [0.75,0.82] | 0.42 [0.40,0.44] | 0.46 [0.45,0.47] | 0.99 [0.99,1.00] | 34.1 [32.2,39.8] | 33.7 [31.1,38.1] |
Northd America annual | 0.57 [0.42,0.73] | 0.55 [0.39.72] | 0.57 [0.42,0.73] | 0.25 [0.23,0.27] | 0.24 [0.21,0.25] | 0.84 [0.74,0.95] | 9.0 [6.5,11.3] | 9.8 [7.6,12.2] |
JAN | 0.50 [0.27,0.63] | 0.47 [0.26,0.63] | 0.51 [0.29,0.64] | 0.35 [0.30,0.43] | 0.34 [0.29,0.42] | 0.78 [0.62,0.88] | 10.4 [7.6,15.7] | 11.2 [8.5,16.5] |
APR | 0.54 [0.39,0.68] | 0.47 [0.34,0.66] | 0.57 [0.44,0.71] | 0.30 [0.27,0.34] | 0.26 [0.24,0.30] | 0.87 [0.79,0.96] | 7.4 [5.2,9.6] | 8.2 [6.2,10.6] |
JUL | 0.61 [0.44,0.78] | 0.56 [0.36,0.76] | 0.61 [0.43,0.78] | 0.29 [0.23,0.43] | 0.27 [0.21,0.43] | 0.95 [0.85,1.00] | 10.5 [7.2,13.1] | 11.2 [7.9,15.2] |
OCT | 0.51 [0.36,0.68] | 0.46 [0.32,0.65] | 0.53 [0.42,0.69] | 0.31 [0.29,0.36] | 0.29 [0.25,0.34] | 0.87 [0.78,0.97] | 7.6 [5.2,9.8] | 8.5 [6.6,10.8] |
Europee annual | 0.69 [0.67,0.72] | 0.69 [0.67,0.70] | 0.68 [0.66,0.70] | 0.27 [0.26,0.29] | 0.27 [0.26,0.29] | 0.81 [0.78,0.83] | 15.3 [13.6,17.7] | 16.4 [14.8,18.7] |
JAN | 0.72 [0.66,0.76] | 0.71 [0.64,0.76] | 0.72 [0.67,0.76] | 0.32 [0.30,0.37] | 0.33 [0.29,0.38] | 0.83 [0.75,0.87] | 20.0 [16.4,26.3] | 21.3 [17.8,27.7] |
APR | 0.59 [0.58,0.63] | 0.57 [0.51,0.61] | 0.59 [0.53,0.64] | 0.30 [0.28,0.32] | 0.30 [0.28,0.32] | 0.80 [0.75,0.85] | 14.8 [12.2,17.9] | 15.7 [13.2,18.8] |
JUL | 0.54 [0.40,0.59] | 0.52 [0.38,0.58] | 0.53 [0.42,0.58] | 0.30 [0.28,0.33] | 0.30 [0.28,0.32] | 0.78 [0.74,0.83] | 11.7 [10.3,13.8] | 12.5 [11.6,14.4] |
OCT | 0.67 [0.58,0.71] | 0.66 [0.60,0.70] | 0.67 [0.62,0.71] | 0.32 [0.30,0.34] | 0.31 [0.29,0.33] | 0.86 [0.81,0.91] | 14.8 [13.2,16.6] | 15.8 [14.3,17.6] |
Asiaf annual | 0.72 [0.68,0.74] | 0.71 [0.68,0.74] | 0.69 [0.65,0.72] | 0.26 [0.26,0.29] | 0.27 [0.27,0.28] | 0.92 [0.91,0.94] | 48.2 [44.3,52.9] | 46.8 [42.6,51.9] |
JAN | 0.77 [0.74,0.81] | 0.78 [0.76,0.82] | 0.75 [0.72,0.80] | 0.29 [0.28,0.30] | 0.31 [0.29,0.31] | 0.96 [0.96,0.99] | 74.8 [69.8,81.7] | 73.2 [68.0,80.5] |
APR | 0.63 [0.60,0.70] | 0.63 [0.59,0.67] | 0.62 [0.58,0.66] | 0.28 [0.27,0.30] | 0.28 [0.27,0.29] | 0.91 [0.91,0.92] | 44.5 [40.5,48.5] | 43.3 [38.9,47.7] |
JUL | 0.64 [0.56,0.69] | 0.63 [0.56,0.68] | 0.59 [0.49,0.65] | 0.32 [0.30,0.35] | 0.33 [0.31,0.35] | 0.93 [0.90,0.96] | 32.2 [28.9,37.5] | 30.7 [27.5,36.2] |
OCT | 0.67 [0.63,0.72] | 0.67 [0.64,0.72] | 0.61 [0.57,0.64] | 0.33 [0.32,0.36] | 0.37 [0.36,0.38] | 0.91 [0.90,0.93] | 43.9 [41.3,51.8] | 42.5 [39.6,50.5] |
Mean [min, max] values are given.
Optimized CNN model estimation in pixels that contain a ground-based monitor.
The number of monitor locations for the global region is 10870 over 2015–2019.
The number of monitor locations in North America is 2789 from 2001–2019.
The number of monitor locations for Europe is 3238 from 2010–2019.
The number of monitor locations for Asia is 3471 from 2015–2019.
Regionsa | Out-of-Sample Optimized Model R2 (Annual) | In-Sample Optimized Model R2 (Annual) | In-Sample DIMAQ Model R2 (Annual) | In-Sample GWR Model R2 (Annual) | Comparison Year Range |
---|---|---|---|---|---|
Global | 0.86 | 0.91 | 0.83 | 0.86 | 2015–2019 |
China | 0.76 | 0.80 | 0.77 | 0.77 | 2015–2019 |
Southeast Asia | 0.11 | 0.58 | 0.31 | 0.24 | 2015–2019 |
South Asia | 0.56 | 0.76 | 0.54 | 0.69 | 2015–2019 |
North America | 0.57 | 0.67 | 0.43 | 0.42 | 2001–2019 |
Western Europe | 0.69 | 0.77 | 0.73 | 0.76 | 2010–2019 |
Tropical Latin America | 0.23 | 0.63 | 0.28 | 0.16 | 2015–2019 |
Rest of World | 0.63 | 0.85 | 0.46 | 0.54 | 2015–2019 |
Region definitions follow the Global Burden of Disease project.
Figure 5
Figure 5. Robustness tests indicating R2 of the CNN model as a function of the percentage of monitors withheld for testing. The top panel contains the results of the CNN model including geophysical a priori PM2.5 and GEOS-Chem outputs as input variables. The bottom figure contains the results of the model excluding these from input variables (details in Table 2). The numbers inside of each circle and its size indicate the R2 of annual average PM2.5 compared with the ground-based observations. The color indicates the difference of R2 between the CNN PM2.5 and the geophysical a priori PM2.5 estimates.
Figure 6
Figure 6. Density scatterplots comparing the optimized CNN model and ground-monitored PM2.5 in different areas. The coefficient of determination (R2), root mean square error (RMSE), reduced major axis linear regression, and the total number are in the top-right corner of each scatter plot. Blue lines indicate the regression line. Black lines are identity lines: y = x.
3.2. Buffer Leave-One-Out Cross-Validation
Figure 7
Figure 7. Global annual R2 and population-weighted mean (PWM) rRMSE for buffer leave-one-out (B-LOO) spatial cross-validation. Solid lines and symbols indicate means of annual values over 2015–2019. Error bars indicate standard deviation of annual values over 2015–2019.
Buffer Radius (km) | Average Number of Training Sites | Average Number of Testing Sites |
---|---|---|
0 | 9783 | 1087 |
10 | 7432 | 1087 |
50 | 4177 | 1087 |
100 | 2049 | 1087 |
150 | 1299 | 1087 |
200 | 704 | 1087 |
500 | 213 | 1087 |
1000 | 143 | 1087 |
Figure 8
Figure 8. Sources of R2 reduction in buffer leave-one-out (B-LOO) spatial cross-validation. Solid bars represent R2 reduction from the reduction of training dataset numbers, and dashed bars represent R2 reduction from the reduction of spatial autocorrelation.
3.3. PM2.5 Distribution with the Optimized Model
Figure 9
Figure 9. Monthly mean PM2.5 estimation of the optimized CNN model in January (top) and July (bottom) 2018. Numbers at the bottom-left are the global population-weighted mean (PWM) PM2.5
3.4. Effects of Excluding Other Loss Function Modifications
3.5. Outlook
Data Availability
The optimized CNN model estimates presented in this work are freely available as a public good via the Washington University Atmospheric Composition Analysis Group website at https://sites.wustl.edu/acag/ or by contacting the authors.
Supporting Information
The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acsestair.3c00054.
Additional information for loss function adjustment, binned number distribution for the distances between sites, map comparison of MSE model and optimized model, comparison of temporal and spatial cross-validation for the optimized model, and complementary comparison for Table 3 (PDF)
Terms & Conditions
Most electronic Supporting Information files are available without a subscription to ACS Web Editions. Such files may be downloaded by article for research use (if there is a public use license linked to the relevant article, that license may permit other uses). Permission may be obtained from ACS for other uses through requests via the RightsLink permission system: http://pubs.acs.org/page/copyright/permissions.html.
Acknowledgments
This work was supported by NASA HAQAST (Grant 80NSSC21K0508), by the NIH (Grants R01ES030616 and R01ES033961), and by internal funds at Washington University.
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Abstract
Figure 1
Figure 1. Input array and structure of the residual convolutional neural network. The left panel shows the input array. The gridded square indicates the 11 × 11 pixel image of predictor variables cropped around a pixel of interest (blue pixel). The right panel shows the structure of the residual convolutional neural network. Rectangles represent the structure of the residual CNN, with blue for convolutional layers, pink for pooling layers, and orange for the flatten layer. Blue lines represent skip connections. Numbers in each convolutional layer indicate the number of input channels, the number of output channels, the width of the kernel, and the height of the kernel. Numbers in the pooling layer indicate the size of kernels. PM2.5,bias is defined as geophysical a priori PM2.5 minus “true” PM2.5.
Figure 2
Figure 3
Figure 3. Assessment of spatial autocorrelation using normalized semivariance of the observed PM2.5 versus distance (left) and normalized semivariance of training matrix versus distance (right).
Figure 4
Figure 4. Example distribution of buffer zones with a radius of 500 kilometers over the global range (top) and with a radius of 200 kilometers over North America (bottom). Pink shading indicates circular buffer zones in which sites are excluded from training around test sites as part of buffer leave-one-out (B-LOO) spatial cross-validation.
Figure 5
Figure 5. Robustness tests indicating R2 of the CNN model as a function of the percentage of monitors withheld for testing. The top panel contains the results of the CNN model including geophysical a priori PM2.5 and GEOS-Chem outputs as input variables. The bottom figure contains the results of the model excluding these from input variables (details in Table 2). The numbers inside of each circle and its size indicate the R2 of annual average PM2.5 compared with the ground-based observations. The color indicates the difference of R2 between the CNN PM2.5 and the geophysical a priori PM2.5 estimates.
Figure 6
Figure 6. Density scatterplots comparing the optimized CNN model and ground-monitored PM2.5 in different areas. The coefficient of determination (R2), root mean square error (RMSE), reduced major axis linear regression, and the total number are in the top-right corner of each scatter plot. Blue lines indicate the regression line. Black lines are identity lines: y = x.
Figure 7
Figure 7. Global annual R2 and population-weighted mean (PWM) rRMSE for buffer leave-one-out (B-LOO) spatial cross-validation. Solid lines and symbols indicate means of annual values over 2015–2019. Error bars indicate standard deviation of annual values over 2015–2019.
Figure 8
Figure 8. Sources of R2 reduction in buffer leave-one-out (B-LOO) spatial cross-validation. Solid bars represent R2 reduction from the reduction of training dataset numbers, and dashed bars represent R2 reduction from the reduction of spatial autocorrelation.
Figure 9
Figure 9. Monthly mean PM2.5 estimation of the optimized CNN model in January (top) and July (bottom) 2018. Numbers at the bottom-left are the global population-weighted mean (PWM) PM2.5
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Supporting Information
Supporting Information
The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acsestair.3c00054.
Additional information for loss function adjustment, binned number distribution for the distances between sites, map comparison of MSE model and optimized model, comparison of temporal and spatial cross-validation for the optimized model, and complementary comparison for Table 3 (PDF)
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