ACS Publications. Most Trusted. Most Cited. Most Read
Cre/lox-Mediated Chromosomal Integration of Biosynthetic Gene Clusters for Heterologous Expression in Aspergillus nidulans
My Activity

Figure 1Loading Img
    Research Article

    Cre/lox-Mediated Chromosomal Integration of Biosynthetic Gene Clusters for Heterologous Expression in Aspergillus nidulans
    Click to copy article linkArticle link copied!

    Other Access OptionsSupporting Information (1)

    ACS Synthetic Biology

    Cite this: ACS Synth. Biol. 2022, 11, 3, 1186–1195
    Click to copy citationCitation copied!
    https://doi.org/10.1021/acssynbio.1c00458
    Published February 16, 2022
    Copyright © 2022 American Chemical Society

    Abstract

    Click to copy section linkSection link copied!
    Abstract Image

    Building strains of filamentous fungi for stable long-term heterologous expression of large biosynthetic pathways is limited by the low transformation efficiency or genetic stability of current methods. Here, we developed a system for targeted chromosomal integration of large biosynthetic gene clusters in Aspergillus nidulans based on site-specific recombinase-mediated cassette exchange. We built A. nidulans strains harboring a chromosomal landing pad for Cre/lox-mediated recombination and demonstrated efficient targeted integration of a 21 kb DNA fragment in a single step. We further evaluated the integration at two loci by analyzing the expression of a fluorescent reporter and the production of a heterologous polyketide metabolite. We compared chromosomal expression at those landing loci to episomal AMA1-based expression, which also shed light on uncharacterized aspects of episomal expression in filamentous fungi. This is the first demonstration of site-specific recombinase-mediated integration in filamentous fungi, setting the foundations for the further development of this tool.

    Copyright © 2022 American Chemical Society

    Read this article

    To access this article, please review the available access options below.

    Get instant access

    Purchase Access

    Read this article for 48 hours. Check out below using your ACS ID or as a guest.

    Recommended

    Access through Your Institution

    You may have access to this article through your institution.

    Your institution does not have access to this content. Add or change your institution or let them know you’d like them to include access.

    Supporting Information

    Click to copy section linkSection link copied!

    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acssynbio.1c00458.

    • Supporting Methods: cloning strategy and in vitro recombination; Figures S1–S12: Biological replicates of fluorescence microscopy and flow cytometry, fluorescent photography, donor vector schematics, sequencing results, LC-MS analysis, PCR gels, in vitro recombination, compound calibration curve; Tables S1–S4: lox sites used, primers, vectors, and strains used in this work (PDF)

    Terms & Conditions

    Most electronic Supporting Information files are available without a subscription to ACS Web Editions. Such files may be downloaded by article for research use (if there is a public use license linked to the relevant article, that license may permit other uses). Permission may be obtained from ACS for other uses through requests via the RightsLink permission system: http://pubs.acs.org/page/copyright/permissions.html.

    Cited By

    Click to copy section linkSection link copied!
    Citation Statements
    Explore this article's citation statements on scite.ai

    This article is cited by 15 publications.

    1. Yufei Zhang, Fang Ba, Shuhui Huang, Wan-Qiu Liu, Jian Li. Orthogonal Serine Integrases Enable Scalable Gene Storage Cascades in Bacterial Genome. ACS Synthetic Biology 2024, 13 (9) , 3022-3031. https://doi.org/10.1021/acssynbio.4c00505
    2. Ya-Nan Chen, You-Zhi Cui, Xiang-Rong Chen, Jun-Yi Wang, Bing-Zhi Li, Ying-Jin Yuan. Direct cloning strategies for large genomic fragments: A review. Biotechnology Advances 2025, 79 , 108494. https://doi.org/10.1016/j.biotechadv.2024.108494
    3. Yang Wu, Qian-Hui Xu, Zi-Lei Chen, Lin-Hui Yang, Dong-Sheng Guo. Synthetic biology meets Aspergillus: engineering strategies for next-generation organic acid production. World Journal of Microbiology and Biotechnology 2025, 41 (2) https://doi.org/10.1007/s11274-024-04246-x
    4. Mingpeng Wang, Lei Chen, Zhaojie Zhang, Qinhong Wang. Recent advances in genome mining and synthetic biology for discovery and biosynthesis of natural products. Critical Reviews in Biotechnology 2025, 45 (1) , 236-256. https://doi.org/10.1080/07388551.2024.2383754
    5. Linlin Yao, Junwei Zheng, Bin Wang, Li Pan. Development of a landing pad system for Aspergillus niger and its application in the overproduction of monacolin J. Microbiological Research 2025, 290 , 127956. https://doi.org/10.1016/j.micres.2024.127956
    6. Liping Zhu, Yazhen Song, Shunan Ma, Song Yang. Heterologous production of 3-hydroxypropionic acid in Methylorubrum extorquens by introducing the mcr gene via a multi-round chromosomal integration system based on cre-lox71/lox66 and transposon. Microbial Cell Factories 2024, 23 (1) https://doi.org/10.1186/s12934-023-02275-z
    7. Indra Roux, Clara Woodcraft, Nicolau Sbaraini, Amy Pepper, Emily Wong, Joe Bracegirdle, Yit‐Heng Chooi. Next‐generation AMA1 ‐based plasmids for enhanced heterologous expression in filamentous fungi. Microbial Biotechnology 2024, 17 (9) https://doi.org/10.1111/1751-7915.70010
    8. Junping Zhou, Qilu Pan, Yinan Xue, Yaping Dong, Yihong Chen, Lianggang Huang, Bo Zhang, Zhi‐Qiang Liu, Yuguo Zheng. Synthetic biology for Monascus : From strain breeding to industrial production. Biotechnology Journal 2024, 19 (7) https://doi.org/10.1002/biot.202400180
    9. Qin Yan, Laichuang Han, Zhongmei Liu, Shengmin Zhou, Zhemin Zhou. Stepwise genetic modification for efficient expression of heterologous proteins in Aspergillus nidulans. Applied Microbiology and Biotechnology 2023, 107 (22) , 6923-6935. https://doi.org/10.1007/s00253-023-12755-2
    10. Lei Li. Accessing hidden microbial biosynthetic potential from underexplored sources for novel drug discovery. Biotechnology Advances 2023, 66 , 108176. https://doi.org/10.1016/j.biotechadv.2023.108176
    11. Jing Gao, Huiqing Liu, Zhenzhen Zhang, Zhihong Liang. Establishment, optimization, and application of genetic technology in Aspergillus spp.. Frontiers in Microbiology 2023, 14 https://doi.org/10.3389/fmicb.2023.1141869
    12. Lei Li. Next-generation synthetic biology approaches for the accelerated discovery of microbial natural products. Engineering Microbiology 2023, 3 (1) , 100060. https://doi.org/10.1016/j.engmic.2022.100060
    13. Sheng Tong, Kexin An, Wuxi Chen, Mengdan Chai, Yuanxia Sun, Qinhong Wang, Demao Li. Identification of neutral genome integration sites with high expression and high integration efficiency in Fusarium venenatum TB01. Synthetic and Systems Biotechnology 2023, 8 (1) , 141-147. https://doi.org/10.1016/j.synbio.2022.12.006
    14. Clara Woodcraft, Yit-Heng Chooi, Indra Roux. The expanding CRISPR toolbox for natural product discovery and engineering in filamentous fungi. Natural Product Reports 2023, 40 (1) , 158-173. https://doi.org/10.1039/D2NP00055E
    15. Amalia Roca, Miguel A. Matilla. Microbial antibiotics take the lead in the fight against plant pathogens. Microbial Biotechnology 2023, 16 (1) , 28-33. https://doi.org/10.1111/1751-7915.14185

    ACS Synthetic Biology

    Cite this: ACS Synth. Biol. 2022, 11, 3, 1186–1195
    Click to copy citationCitation copied!
    https://doi.org/10.1021/acssynbio.1c00458
    Published February 16, 2022
    Copyright © 2022 American Chemical Society

    Article Views

    2441

    Altmetric

    -

    Citations

    Learn about these metrics

    Article Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.

    Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.

    The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated.