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Regulatory Part Engineering for High-Yield Protein Synthesis in an All-Streptomyces-Based Cell-Free Expression System

  • Huiling Xu
    Huiling Xu
    School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
    More by Huiling Xu
  • Chen Yang
    Chen Yang
    School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
    More by Chen Yang
  • Xintong Tian
    Xintong Tian
    School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
    More by Xintong Tian
  • Yilin Chen
    Yilin Chen
    School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
    More by Yilin Chen
  • Wan-Qiu Liu
    Wan-Qiu Liu
    School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
    More by Wan-Qiu Liu
  • , and 
  • Jian Li*
    Jian Li
    School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
    *[email protected]
    More by Jian Li
Cite this: ACS Synth. Biol. 2022, 11, 2, 570–578
Publication Date (Web):February 7, 2022
https://doi.org/10.1021/acssynbio.1c00587
Copyright © 2022 American Chemical Society

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    Abstract

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    Streptomyces-based cell-free expression systems have been developed to meet the demand for synthetic biology applications. However, protein yields from the previous Streptomyces systems are relatively low, and there is a serious limitation of available genetic tools such as plasmids for gene (co)expression. Here, we sought to expand the plasmid toolkit with a focus on the enhancement of protein production. By screening native promoters and ribosome binding sites, we were able to construct a panel of plasmids with different abilities for protein synthesis, which covered a nearly 3-fold range of protein yields. Using the most efficient plasmid, the protein yield reached up to a maximum value of 515.7 ± 25.3 μg/mL. With the plasmid toolkit, we anticipate that our Streptomyces cell-free system will offer great opportunities for cell-free synthetic biology applications such as in vitro biosynthesis of valuable natural products when cell-based systems remain difficult or not amenable.

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acssynbio.1c00587.

    • Table S1, the sequences of shortened promoters; Table S2, the sequences of reported synthetic/engineered promoters; Table S3, three reported synthetic RBSs; Table S4, primers used for PCR amplification of 32 native promoters and the pJL1 backbone; Table S5, primers used for PCR amplification of shortened promoters; Table S6, primers used for the construction of linear DNA templates; Figure S1, transcript levels of genes with stable expression profiles from RNA-seq; Figure S2, effects of different RBSs on the expression of sfGFP and mCherry; Figure S3, the plasmid map of pJL1-EGFP (PDF)

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    Cited By

    This article is cited by 8 publications.

    1. Ren Zhang, Wan-Qiu Liu, Shengjie Ling, Jian Li. Combining Cell-Free Expression and Multifactor Optimization for Enhanced Biosynthesis of Cinnamyl Alcohol. Journal of Agricultural and Food Chemistry 2023, 71 (22) , 8551-8557. https://doi.org/10.1021/acs.jafc.3c02340
    2. Yushi Liu, Wan-Qiu Liu, Shuhui Huang, Huiling Xu, Haofan Lu, Changzhu Wu, Jian Li. Cell-free metabolic engineering enables selective biotransformation of fatty acids to value-added chemicals. Metabolic Engineering Communications 2023, 16 , e00217. https://doi.org/10.1016/j.mec.2022.e00217
    3. Songya Zhang, Yunliang Chen, Jing Zhu, Qiujie Lu, Max J. Cryle, Youming Zhang, Fu Yan. Structural diversity, biosynthesis, and biological functions of lipopeptides from Streptomyces. Natural Product Reports 2023, 40 (3) , 557-594. https://doi.org/10.1039/D2NP00044J
    4. Simon J. Moore, Hung-En Lai, Jian Li, Paul S. Freemont. Streptomyces cell-free systems for natural product discovery and engineering. Natural Product Reports 2023, 40 (2) , 228-236. https://doi.org/10.1039/D2NP00057A
    5. Francesco Del Carratore, Erik KR Hanko, Rainer Breitling, Eriko Takano. Biotechnological application of Streptomyces for the production of clinical drugs and other bioactive molecules. Current Opinion in Biotechnology 2022, 77 , 102762. https://doi.org/10.1016/j.copbio.2022.102762
    6. Chen Yang, Miaomiao Yang, Wanhua Zhao, Yue Ding, Yu Wang, Jian Li. Establishing a Klebsiella pneumoniae-Based Cell-Free Protein Synthesis System. Molecules 2022, 27 (15) , 4684. https://doi.org/10.3390/molecules27154684
    7. Kara Jew, Philip E. J. Smith, Byungcheol So, Jillian Kasman, Javin P. Oza, Michael W. Black. Characterizing and Improving pET Vectors for Cell-free Expression. Frontiers in Bioengineering and Biotechnology 2022, 10 https://doi.org/10.3389/fbioe.2022.895069
    8. Xintong Tian, Wan-Qiu Liu, Huiling Xu, Xiangyang Ji, Yushi Liu, Jian Li. Cell-free expression of NO synthase and P450 enzyme for the biosynthesis of an unnatural amino acid L-4-nitrotryptophan. Synthetic and Systems Biotechnology 2022, 7 (2) , 775-783. https://doi.org/10.1016/j.synbio.2022.03.006

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