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Reprogramming One-Carbon Metabolic Pathways To Decouple l-Serine Catabolism from Cell Growth in Corynebacterium glutamicum

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CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
University of Chinese Academy of Sciences, Beijing 100049, China
§ Savaid Medical School, University of Chinese Academy of Sciences, Beijing 100049, China
*E-mail: [email protected]. Phone: +86 10 64806119. Fax: +86 10 64806157.
Cite this: ACS Synth. Biol. 2018, 7, 2, 635–646
Publication Date (Web):January 9, 2018
https://doi.org/10.1021/acssynbio.7b00373
Copyright © 2018 American Chemical Society
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Abstract

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l-Serine, the principal one-carbon source for DNA biosynthesis, is difficult for microorganisms to accumulate due to the coupling of l-serine catabolism and microbial growth. Here, we reprogrammed the one-carbon unit metabolic pathways in Corynebacterium glutamicum to decouple l-serine catabolism from cell growth. In silico model-based simulation showed a negative influence on glyA-encoding serine hydroxymethyltransferase flux with l-serine productivity. Attenuation of glyA transcription resulted in increased l-serine accumulation, and a decrease in purine pools, poor growth and longer cell shapes. The gcvTHP-encoded glycine cleavage (Gcv) system from Escherichia coli was introduced into C. glutamicum, allowing glycine-derived 13CH2 to be assimilated into intracellular purine synthesis, which resulted in an increased amount of one-carbon units. Gcv introduction not only restored cell viability and morphology but also increased l-serine accumulation. Moreover, comparative proteomic analysis indicated that abundance changes of the enzymes involved in one-carbon unit cycles might be responsible for maintaining one-carbon unit homeostasis. Reprogramming of the one-carbon metabolic pathways allowed cells to reach a comparable growth rate to accumulate 13.21 g/L l-serine by fed-batch fermentation in minimal medium. This novel strategy provides new insights into the regulation of cellular properties and essential metabolite accumulation by introducing an extrinsic pathway.

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Supporting Information is available free of charge on the ACS Publications Web site. The Supporting Information is available free of charge on the ACS Publications website at DOI: 10.1021/acssynbio.7b00373.

  • Table S1: Physiological parameters of engineered C. glutamicum strains in the shake flask cultivations; Table S2: Differentially expressed proteins between the engineered C. glutamicum strains SER-13, SER-14 and SER-15 as identified by MALDI-TOF MS; Table S3: Primers used in this study; Figure S1: Expressed protein profiles of the engineered strains (PDF)

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Cited By


This article is cited by 4 publications.

  1. Yaeseong Hong, Jie Ren, Xinyi Zhang, Wei Wang, An-Ping Zeng. Quantitative analysis of glycine related metabolic pathways for one-carbon synthetic biology. Current Opinion in Biotechnology 2020, 64 , 70-78. https://doi.org/10.1016/j.copbio.2019.10.001
  2. Ning Li, Weizhu Zeng, Sha Xu, Jingwen Zhou. Toward fine-tuned metabolic networks in industrial microorganisms. Synthetic and Systems Biotechnology 2020, 5 (2) , 81-91. https://doi.org/10.1016/j.synbio.2020.05.002
  3. Andreas Schwentner, André Feith, Eugenia Münch, Judith Stiefelmaier, Ira Lauer, Lorenzo Favilli, Christoph Massner, Johannes Öhrlein, Bastian Grund, Andrea Hüser, Ralf Takors, Bastian Blombach. Modular systems metabolic engineering enables balancing of relevant pathways for l-histidine production with Corynebacterium glutamicum. Biotechnology for Biofuels 2019, 12 (1) https://doi.org/10.1186/s13068-019-1410-2
  4. Fangyu Cheng, Huimin Yu, Gregory Stephanopoulos. Engineering Corynebacterium glutamicum for high-titer biosynthesis of hyaluronic acid. Metabolic Engineering 2019, 55 , 276-289. https://doi.org/10.1016/j.ymben.2019.07.003

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