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Surface Effects on Aggregation Kinetics of Amyloidogenic Peptides

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National Centre for Biomolecular Research, Faculty of Science and CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00 Brno-Bohunice, Czech Republic
Division of Biochemistry and Structural Biology, Lund University, Lund, Sweden
§ Division of Theoretical Chemistry, Lund University, Lund, Sweden
Cite this: J. Am. Chem. Soc. 2014, 136, 33, 11776–11782
Publication Date (Web):July 28, 2014
https://doi.org/10.1021/ja505502e

Copyright © 2014 American Chemical Society. This publication is licensed under these Terms of Use.

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Abstract

The presence of surfaces influences the fibril formation kinetics of peptides and proteins. We present a systematic study of the aggregation kinetics of amyloidogenic peptides caused by different surfaces using molecular simulations of model peptides and thioflavin T fluorescence experiments. Increasing the monomer–surface attraction affects the nucleation and growth of small oligomers in a nonlinear manner: Weakly attractive surfaces lead to retardation; strongly attractive surfaces lead to acceleration. Further, the same type of surface either accelerates or retards growth, depending on the bulk propensity of the peptide to form fibrils: An attractive surface retards fibril formation of peptides with a high tendency for fibril formation, while the same surface accelerates fibril formation of peptides with a low propensity for fibril formation. The surface effect is thus determined by the relative association propensity of peptides for the surface compared to bulk and by the surface area to protein concentration ratio. This rationalization is in agreement with the measured fibrillar growth of α-synuclein from Parkinson and amyloid β peptide from Alzheimer disease in the presence of surface area introduced in a controlled way in the form of nanoparticles. These findings offer molecular insight into amyloid formation kinetics in complex environments and may be used to tune fibrillation properties in diverse systems.

Introduction

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Amyloid fibril formation is observed in several devastating human diseases, including neurodegenerative conditions such as Alzheimer and Parkinson diseases. In the form of monomers, the proteins involved in these diseases seem to have an extremely low rate of nucleation and self-assembly under normal physiological conditions and concentrations. A major question regards how these diseases start, since once the first amyloid aggregates emerge, there seems to be no return. In vivo, amyloid aggregation occurs in a complex environment including a large number of cosolutes and surfaces. It is therefore essential to identify factors that can initiate the process and to systematically investigate how the aggregation process is enhanced or attenuated by various substances and surfaces. To deepen our understanding of the process and to obtain predictive power it is crucial to relate the observed effects to the molecular properties of the substance or surface as well as the aggregating protein or peptide. Moreover, the increasing use of nanoparticles in technical and biomedical applications (1-3) require systematic studies to understand under which conditions these foreign surfaces catalyze or prevent aggregation. (4, 5)
Surfaces have a large impact on the rates of protein aggregation leading to amyloid fibril formation. For example α-synuclein (α-syn) is natively unfolded as a monomer in solution and has a high affinity for various surfaces, including phospholipid membranes. (6-9) Aggregation of α-syn in bulk solution is extremely slow under physiological conditions, but the protein may nucleate at surfaces, leading to amyloid growth along the surface and into solution. (6) α-syn aggregation kinetics starting from monomers has this far only been reported in the presence of binding surfaces such as beads or sample containers of glass or polystyrene, or phospholipid membranes. (7, 10-13) However, the surface presented on α-synuclein fibrils seems to catalyze nucleation at mildly acidic pH. Fibril formation is hence observed in the absence of other atractive surfaces, provided a small amount of seed is added to the (monomer) solution. (14) The amyloid β peptide (Aβ42) from Alzheimer disease aggregates slowly at physiological brain fluid concentration (low nM range). However, for this peptide, nucleation in solution is fast enough to form fibrils on a minutes-to-days time scale in pure monomer solutions exceeding ca. 100 nM peptide concentration in sample containers with a nonbinding PEG-ylated surface that has no measurable affinity for Aβ. (15, 16) Also this protein is affected by various surfaces. Fibrils of the same peptide can represent surfaces that speed up the aggregation process in an autocatalytic manner. (16-18) The process is also sensitive to foreign surfaces such as cuvettes, test tubes, or nanoparticles and may be accelerated (4, 19) or retarded (19-23) depending on both the surface chemistry and the physicochemical properties of the protein and its bulk aggregation behavior. The surface area to protein concentration ratio plays a critical role and can lead to either catalysis or retardation. (19)
While aggregation rates of proteins correlate with the stability toward unfolding of the respective monomeric protein, (24, 25) the same property seems to govern the effect of surfaces. In a series on monellin mutants, the surface presented on polymeric nanoparticles was found to catalyze the fibril formation of relatively stable variants with slower aggregation in bulk, while the same surface retards the fibril formation of relatively unstable variants with faster aggregation in bulk. (20)
To summarize, the effects of surfaces on aggregation kinetics are profound and the coupling to molecular driving forces is poorly understood. The present work sets out to rationalize current observations using a simplified molecular model where intermolecular interactions and kinetics can be varied in a controlled fashion. We have previously found that Monte Carlo simulations with simplified potentials offer an insightful way to identify general factors affecting the fibril formation process. (26, 27) Here, molecular detail is extracted from dynamic Monte Carlo simulations of amyloid growth in bulk and in the presence of surfaces with varying attraction potential, coupled with fluorescence spectroscopy measurements in the presence of nanoparticles with varying ratios of surface area to bulk protein and salt concentration.

Methods

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Dynamic Monte Carlo Simulation

The amyloidogenic peptides were modeled as patchy spherocylinders (PSC), (26) i.e. cylinders with hemispherical caps at both ends and with an attractive stripe on one side. As in a previous study on the nucleation and growth of an amyloid-like structure, (28) the model includes two states: α, corresponding to the folded solution structure, and β, corresponding to the β-sheet structure found in amyloids. In brief, the size of the PSC was 1 × 6 nm2 with an attractive stripe of 90° for the α-state and 180° for the β-state. The PSC dimensions correspond to roughly 30 amino acids, a typical value seen in β-sheet strands in amyloid fibril structures. It is unlikely that the thickness has any significant effect, as it only determines the spacing in the fibrils. The effective implicit solvent interactions between the attractive stripes are −8.4 kBT and −21 kBT for the α and β state, respectively. These effective stripe interactions include hydrophobic interactions, hydrogen bonds, salt-bridges, etc. The β-state has a chirality of 10°, and the transition free energy from α → β is 15 kBT. In each simulation step, the intrinsic transition probability was 1.6 × 10–3.
We used the dynamic Monte Carlo (DMC) (29-31) simulation method—shown to converge to Brownian dynamics (32)—where configurations are sampled in the NVT ensemble (i.e., with constant volume, temperature, and number of molecules) using a prismatic, slit geometry, where we varied the protein interaction strength of the flat, facing surfaces; see Figure 1. The displacement parameters of translational and rotational moves were matched to experimental translational (DT) and rotational (DR) diffusion constants of the Aβ amyloid forming peptide with DT = 0.15 nm2 ns–1 and DR = 0.08 ns–1 at 300 K. (33) In contrast to conventional Metropolis Monte Carlo, displacements in DMC are small enough to ensure physical moves and the maximum PSC displacement and rotation per step were 0.212 nm and 7.5°, respectively. Together with the diffusion constants above, these define the time scale of a simulation step—where on average all particles have been updated—to 0.02 ns. For each simulated condition, three to six separate runs were conducted with different random initial configurations and the obtained growth profiles were averaged over all runs.

Figure 1

Figure 1. (Left) Two-state peptide model used in dynamic Monte Carlo simulations in the presence of planar surfaces (green). Kinetic and thermodynamic properties are described by the parameters (i) → (iv), discussed in the section “Surface Effect for Peptide Mutants”, as well as through a surface attraction strength, K (Table 1). (Right) Representative snapshot from our simulation where orange/gray are particles in the fibril state, while blue/red particles are in the random coil state.

Unless otherwise stated, the system was composed of 200–800 PSC peptides, and the slit dimensions were 50 × 50 × 50 nm3, corresponding to the concentration range 3–11 mM. The interaction with slit walls was calculated using the spherocylinder line segment projected onto the wall in the direction of its patch and truncation of the projected segment by a cutoff. The resulting interaction profiles between PSC and the wall can be found in Figure 2. The interaction strength between different species was calculated using Berthelot’s rule (34) as in our previous study. (28) The monomer–surface binding constant, K, is defined as(1)where w(r) is the angularly averaged potential of mean force between a monomer and the surface, kBT is the thermal energy, c is the contact distance where w = 0, and ρ = 21 Å2 is the maximum monomer coverage in the Langmuir adsorption model.

Figure 2

Figure 2. Interaction energy between a weakly attractive surface (WA) and the α state of the peptide. The left figure depicts the distance dependence of the interaction when PSC is parallel to the wall oriented with its patch toward the wall. The right figure displays the orientation dependence of the interaction when PSC is parallel to the wall in distance close to the interaction minimum.

Kinetic Experiments

Materials

The Aβ42(M1–42) peptide (MDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA), here called Aβ42, was expressed in Escherichia coli from a synthetic gene and purified as described by Walsh et al. (35) with the exception that size exclusion with spin filters was replaced by gel filtration. In short, the purification procedure involved sonication of E. coli cells, dissolution of inclusion bodies in 8 M urea, ion exchange in batch mode on DEAE cellulose resin, lyophilization, and gel filtration on a 3.4 cm wide × 200 cm tall gel filtration column at 4 °C. The purified peptide was frozen as identical 3 mL aliquots and lyophilized. All chemicals were of analytical grade. Human α-synuclein was expressed in E. coli from a Pet-plasmid (kind gift from H. Lashuel, Lausanne) and purified from the soluble fraction using sonication, boiling, and ion exchange chromatography as described (7) and stored as frozen aliquots. Nanoparticles: Plain polystyrene nanoparticles of 23 nm diamater, polystyrene nanoparticles of 26 nm diameter with COOH-groups, and polystyrene nanoparticles of 57 nm diamater with NH2-groups were obtained from Bangs laboratories (Fishers, Indiana) and were dialyzed against the experimental buffers with daily exchange for 2 weeks before use.

Preparation of Samples for Experiments

For kinetic experiments, aliquots of purified Aβ42 were dissolved in 6 M guanidinium chloride (GuHCl), and the monomer was isolated by gel filtration on a 1 cm wide × 30 cm tall Superdex 75 column in 20 mM sodium phosphate buffer, pH 8, with 0.2 mM EDTA and 0.02% NaN3. The center of the monomer peak was collected on ice and lyophilized. The sample was again dissolved in 6 M GuHCl, and the monomer was isolated by gel filtration on a Superdex 75 column in 20 mM sodium phosphate buffer, pH 8, with 0.2 mM EDTA and 0.02% NaN3. The gel filtration steps remove traces of pre-existent aggregates and exchanges the buffer to the one used in the fibril formation experiments. The peptide concentration was determined from the absorbance of the integrated peak area using ϵ280 = 1400 L mol–1 cm–1 as calibrated using quantitative amino acid analysis. The monomer generated in this way was diluted with buffer to 12 μM. Nanoparticles were prepared as a dilution series at two times the desired final concentration. ThioflavinT (ThT) was added from a 1.2 mM stock to a final concentration of 6 μM, as chosen in a range that produces a fluorescence signal that is linearly related to the fibril concentration. (16) These solutions were then mixed 1:1 with Aβ42 to obtain a final concentration of 6 μM Aβ42 and no or between 0.002 and 0.11 g/L nanoparticles. All samples were prepared in low-bind Eppendorff tubes (Axygen, California, USA) on ice using careful pipetting to avoid introduction of air bubbles. Each sample was then pipetted into multiple wells of a 96 well half-area plate of black nonbinding plates with a clear bottom (Corning 3881, Massachusetts, USA), 100 μL per well.
The α-synuclein monomer was isolated by gel filtration on a 1 cm wide × 30 cm tall Superdex 75 column in 10 mM Mes/NaOH pH 5.5. The center of the monomer peak was collected. The protein concentration was determined from the absorbance of the integrated peak area using ϵ280 = 5800 L mol–1 cm–1. Samples were prepared by a 1:1 mixing of protein and nanoparticle stocks to obtain a final concentration of 20 μM α-synuclein and 10 μM ThT without or with polystyrene nanoparticles (diameter 23 nm) ranging from 0.001 to 0.5 g/L in 2-fold increments. Each sample was pipetted into multiple wells of a 96 well half-area plate of black nonbinding plates with a clear bottom (Corning 3881, Massachusetts, USA).

Kinetic Assays

Assays were initiated by placing the 96-well plate at 37 °C under quiescent conditions in a plate reader (Fluostar Omega or Optima, BMGLabtech, Offenburg, Germany). The ThT fluorescence was measured through the bottom of the plate every 60 s using a 440 nm excitation filter and a 480 nm emission filter. The ThT fluorescence was followed for four to six repeats of each sample, and the whole setup was repeated twice in separate plates.

Results and Discussion

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Effect of Wall Binding Strength

We have simulated amyloid aggregate nucleation and growth in the presence of hard, planar surfaces to which monomers are repelled or attracted according to the binding constants listed in Table 1. Figure 3 shows oligomer growth profiles at different peptide concentrations for each surface type accompanied by representative snapshots. There is a dramatic difference between the surface effects on fibril formation. A weakly attractive (WA) surface decreases the nucleation rate compared to a purely repulsive surface (R). This is because the former surface adsorbs monomers and thus decreases the bulk concentration. At the same time there is no appreciable surface nucleation, leading to overall growth retardation. Nuclei are formed in bulk solution, and the final oligomer structure is the same as in pure bulk. Note that fibrils were identified as tetramers and larger oligomers, since the tetramer is the minimum nucleation size of the employed model in bulk growth of amyloid-like structures. (28) Changing the definition of fibrils to hexamers did not change the observed trends.
Table 1. Peptide Binding Constants to Four Different Planar Surfaces
surface type K/μM–1
repulsiveR∼0
weakly attractiveWA0.0017
attractiveA0.075
highly attractiveHA0.16

Figure 3

Figure 3. (Top) Oligomer growth profiles in the presence of planar surfaces with increasing binding strengths (see Table 1) and monomer concentration (colored lines). Each profile represents an average from at least three independent simulations. (Bottom) Corresponding snapshots at an initial monomer concentration of 5.3 mM.

The opposite behavior is observed for highly attractive (HA) surfaces, where nuclei are formed at the interface and fibril formation is faster than at the repulsive (R) surface for each simulated concentration. The attractive surface (A) lies between the WA and HA surfaces and leads to similar overall kinetics as the repulsive (R) surface. However, the systems R and A are different in location and morphology of fibrils; see Figure 3. The surface oligomers (systems A and HA) have different conformations compared to those formed in solution (in system R). While double layer ribbons were formed in solution, surface fibrils were composed of a monolayer ribbon with the hydrophobic part oriented toward the surface. Such surface fibrils are less rigid and readily break due to competition with the attractive surface.
The above results are valid over the range of tested peptide concentrations, 3–11 mM, and the observed growth acceleration or retardation depends solely on the surface binding strength. This is shown in Figure 4, right, via half times plotted as a function of the surface affinity.

Figure 4

Figure 4. (Left) Half times, τhalf, of the fibril formation in systems with varying monomer affinities for the surface. (Right) τhalf for systems with increasing bulk/surface ratio as a function of surface binding strength. Increased bulk volume is depicted by black circles (1.25 × 105 nm3), red diamonds (3.75 × 105 nm3), and blue squares (7.5 × 105 nm3). The half times represent the time where 50% of the monomers have formed fibrils averaged over three independent simulation runs, and the error bars display the standard deviation.

Effect of Surface/Bulk Ratio

The influence of the surface/bulk ratio on oligomer growth was studied by additional simulations with a fixed surface area (500 nm2) while increasing the bulk volume from 1.25 × 105 to 7.5 × 105 nm3. The PSC peptide concentration in all systems was kept fixed at 2.66 mM. Figure 4, right, shows that the surface effect is decreased by increasing the bulk volume, and as expected, all lines eventually converge to the bulk limit. Indeed, bulk expansion for the WA surface leads to bulk nucleation with a half-time similar to that of the R surface. Still, all nuclei were formed at the highly attractive (HA) surface even for the largest bulk volume, and the observed growth retardation with increasing volume is thus due to the increased diffusion time to reach the surface. Nevertheless, we expect that an even further increase of the bulk would eventually lead to bulk nucleation and growth, similar to the system with a repulsive surface. The full growth curves are displayed in the Supporting Information.

Surface Effect for Peptide Mutants

Is fibrillar retardation an intrinsic property of the WA surface? To test this, we studied different peptide mutants and compared the growth to the repulsive (R) surface. The advantage of the simplified simulation model is that molecular properties can be mutated in a controlled fashion by varying the following parameters (see Figure 1):
(i)

monomer–monomer interaction strength corresponding to additional hydrogen bonds, salt bridges, coulomb interaction, etc. within the same monomer–monomer attractive area;

(ii)

patch size corresponding to added hydrophobic residues or other interactions that result in the same interaction density, but larger attractive area on PSC;

(iii)

the free energy of the fibrillar conformation corresponding to mutations that affect the free energy difference between solution and the fibrillar state (refolding free energy difference); and

(iv)

probability of attempts to switch from solution to the fibrillar state corresponding to modified refolding kinetics (internal friction to refold).

The half times of fibrillar growth shown in Figure 5 show that retardation is not an intrinsic property of the WA surface, which can both retard or accelerate the fibril formation depending on the particular peptide. For mutants (i), (ii), and (iii), there is a clear cross section of lines with circles and squares representing a point where the growth is roughly the same for the WA and the R surfaces. This point is not clear in the case of (iv) mutants, but from growth curves (see SI) there may be one for even larger mutations. Interestingly, fibril formation of less amyloidogenic mutants, i.e. with higher intrinsic stability, is accelerated by the WA surface, while the growth of more fibril prone mutants is retarded by the WA surface compared to the R surface.

Figure 5

Figure 5. Half times of fibrillar growth of peptide mutants at the repulsive (R) and at the weakly attractive (WA) surfaces. The mutation types are peptide–peptide attraction (top left), width of attractive patch (top, right), α → β transition barrier (bottom, left), and folding probability/friction (bottom, right).

Experiment: Effect of Nanoparticles on α-Synuclein Aggregation

We will now validate the simulation results by experimentally investigating the effect of the surface/bulk ratio for a system with attractive peptide–surface interactions. The aggregation of 20 μM α-synuclein into amyloid fibrils was studied by ThT fluorescence in the absence and presence of the increasing concentration of 23 nm diameter polystyrene nanoparticles in 10 mM MES buffer, pH 5.5. In the absence of nanoparticles, no increase in ThT fluorescence is observed, implying that the protein remains monomeric in solution over the time course of the experiment (215 h). In contrast, the data obtained in the presence of nanoparticles have a sigmoidal-like appearance with a lag phase, a growth phase, and an equilibrium plateau at 0.125 and 0.25 g/L nanoparticles, with some variation in shape at 0.06 g/L (Figure 6). The process is clearly accelerated by the presence of polystyrene nanoparticles in a reproducible manner depending on the surface area presented.

Figure 6

Figure 6. Aggregation kinetics for 20 μM α-synuclein in 10 mM MES/NaOH pH 5.5 in the absence and presence of 23 nm polystyrene nanoparticles. (A) ThT fluorescence as a function of time with no (black), 0.06 g/L (blue), 0.12 g/L (green), or 0.25 g/L (red) nanoparticles. The first 110 h are shown. (B) Half time (average and standard deviation) for fibrillar growth as a function of nanoparticle concentration. The triangles indicate that no aggregation is observed over 215 h in samples with 0.03 g/L or less nanoparticles.

The nanoparticle concentrations that lead to sigmoidal aggregation curves within the time frame of the experiment (0.06, 0.125, 0.25, and 0.5 g/L) correspond to total surface areas of 16, 32, and 65 and 130 m2/L, respectively, assuming perfect spheres. This means that the 135, 270, 540, or 1080 Å2 surface area is available per protein molecule in a 20 μM solution. At least in the three lowest concentrations there is less surface than can bind all protein molecules in one densely packed layer, whereas 1080 Å2 is close to the cross section area as expected for a globular protein of 14 kDa.
At pH 5.5 α-synuclein is negatively charged (≈ – 4e) and lack of self-association in bulk is likely caused by electrostatic repulsion. In our simulation model this corresponds to a very weak peptide–peptide interaction strength, cf. Figure 5, top left. As forecasted by the model, a strong, nonelectrostatic attraction between the polystyrene surface and peptide leads to fibrillar growth acceleration upon increasing the surface/bulk ratio (Figure 4, left).

Experiment: Effect of Nanoparticles on Aβ42 Aggregation

In this section we investigate the effect of peptide–surface interaction strength by introducing charged surfaces and varying the electrostatic screening using salt. The aggregation of 6 μM Aβ42 into amyloid fibrils was studied by ThT fluorescence in the absence and presence of an increasing concentration of nanoparticles at low salt, as well as at 50 and 300 mM NaCl in 20 mM sodium phosphate buffer, 0.2 mM ETDA, pH 8.0. All curves are sigmoidal-like with a lag phase, a growth phase, and an equilibrium plateau, with some variation in shape. The time at which half the monomers are consumed, i.e. the time at which half the final ThT intensity over the initial baseline is reached, τhalf, is extracted from each curve and plotted in Figure 7. Clearly, the process is affected by the presence of polystyrene nanoparticles in a manner depending on the surface charge and concentration. Negatively charged surfaces cause a retardation of aggregation. This is most pronounced when no salt is added, in which case τhalf increases with nanoparticle concentration up to around 0.022 g/L where τ half is doubled. At higher nanoparticle concentration (larger surface area), τhalf is again decreasing and at 0.11 g/L the value is the same as that in the absence of nanoparticles. At an even higher nanoparticle concentration, the ThT signal is distorted and measurements become unreliable. In the presence of positively charged nanoparticles we observe the opposite trend with catalysis up to 0.05 g/L, while the next concentration (0.11 g/L) cause retardation. The turnover occurs between 0.05 and 0.11 g/L nanoparticles, presenting a surface of 2–4 m2/L assuming perfect spheres of 57 nm diameter, equivalent to 500–1000 Å2 per Aβ42 peptide. Thus, the process is increasingly catalyzed until the total surface area is approximately that required to bind all peptides, in agreement with a previous report. (19) The interaction between Aβ42 and the surfaces is modulated by the addition of salt which for both negative and positive surfaces attenuates the effect. At 300 mM NaCl, the addition of negatively charged nanoparticles leads to an earlier onset of aggregation (shortened lag phase) but the overall aggregation profile is less steep, leading to a largely similar τhalf.

Figure 7

Figure 7. Aggregation kinetics for 6 μM Aβ42 in 20 mM sodium phosphate, 0.2 mM EDTA, pH 8.0 in the absence and presence of nanoparticles. (A and C) ThT fluorescence as a function of time with no (black), 0.002 (blue), 0.0044 (light blue), 0.01 (green), 0.022 (yellow), 0.05 (orange), or 0.11 (red) g/L polystyrene nanoparticles of 26 nm diameter with COOH-groups (A) or of 57 nm with NH2-groups (C). The first 2 and 1.2 h are shown, respectively. (B and D) Half times of fibrillar growth as a function of the concentration of nanoparticles (B: anionic, D: cationic) at low, 50, and 300 mM NaCl.

At pH 8, Aβ42 is negatively charged (≈ −3e), and for a cationic surface, the strong attractive electrostatic contribution to the peptide–surface interaction enhances growth; less so when screening salt is added. This can be explained by an enhanced surface nucleation due to a higher surface concentration. As more surface is added, the local concentration eventually decreases (due to dilution), leading to growth retardation. This was observed also for α-synuclein at the largest concentration of the nanoparticles. The effect of salt addition is 2-fold: both the peptide–peptide repulsion and peptide–surface interactions are screened. While salt screening of the peptide–surface interaction decelerates growth, it also reduces the peptide–peptide repulsion, leading to acceleration, and the final result is thus a mix of the two effects. This qualitative analysis is fully consistent with the simulation model; see Figure 5, top left. Quantitative agreement between simulations and experiment is not to be expected due to the simplicity of the model and the fact that surface fibrils can have different morphology than in the bulk and can therefore result in a different amount of the ThT signal.
In the case of an anionic surface, a small amount of nanoparticles retards growth at low salt concentrations. This is likely due to a weak surface adsorption (caused by nonelectrostatic forces) which—as shown by the simulations, see Figure 4—retards fibrillation by decreasing the bulk concentration. At even higher nanoparticle concentrations bulk kinetics is restored. The turnover occurs around 0.022 g/L nanoparticles, representing a surface of ca. 4 m2/L assuming perfect spheres, equivalent to ca. 1000 Å2 per Aβ42 peptide. Thus, opposite to the cationic nanoparticle, the process in the presence of anionic nanoparticles is increasingly retarded until the total surface area is approximately that required to bind all peptides. Upon salt addition, repulsive electrostatic peptide–peptide and peptide–surface interactions are weakend, leading to faster kinetics over the entire range of nanoparticle concentrations as also observed in the simulations when increasing the attractive interaction strength (Figure 5, top left).

Rationalization of Existing Studies

In summary, both simulations and experiments show that surfaces can cause retardation or acceleration of the kinetics of aggregate growth. Further, one surface can lead to both effects, depending on the specific peptide and surface properties, as well as on the surface area to protein concentration ratio. This can be rationalized by competition between surface and bulk for the nucleation and growth processes. When aggregation at an adsorbing surface is slower than in bulk, the overall growth in the system is retarded due to monomer depletion in the bulk. If, however, surface aggregation is faster than in bulk, the overall growth in the system can be accelerated. Our finding that some surfaces enhance Aβ peptide aggregation while others inhibit or considerably slow down fibril formation is in agreement with recent observations by dual polarization interferometry. (36) Further, lipid vesicles were reported to accelerate or retard the fibrillar growth of different peptides, which is also in accord with our data. (37-41)
The present findings clarify a range of recent experimental studies on amyloid growth of peptide mutants in the presence of nanoparticles which show both retardation and acceleration. Particularly, for mutants with high intrinsic stability and low intrinsic aggregation the rate of amyloid formation is accelerated by nanoparticles, while for mutants with a low intrinsic stability and high intrinsic aggregation rate amyloid formation is retarded by nanoparticles. (20) An advantage of a simplified model is that we can modify the parameters of mutants separately. Experimentally, a single mutation would typically influence more parameters of our model, yet all parameters follow the same trend, showing that our results are robust and general.
Electron microscopy revealed the formation of amyloid fibrils detached from the nanoparticle surface. (4) Moreover, the half ribbon conformation obtained for the surface fibrils in simulations agrees with spectroscopic and AFM experiments as well as with coarse-grained and all-atom simulations of peptides at hydrophobic surfaces like C18 or graphite, observed to promote amyloid fibril formation. (36, 42-46) Ribbons were also observed for the cationic amyloidogenic peptide KIGAKI on a phospholipid membrane. (47)
The current predictions on kinetics are based on a generic, coarse grained model, rigorously evaluated using statistical mechanics. The findings are hence likely to be general. Despite no significant secondary nucleation events (surface seeding or fibril breakage) in our simulation, the surface is likely to have the same effect on kinetics involving secondary nucleation pathways, since our findings are based on the change of local concentration. Yet there could be deviations and more complex behavior due to higher order kinetics and the relative influence of the surfaces on different microscopic steps in the process. (48) Further, the perfectly flat homogeneous surfaces in the simulations allow for relatively fast interfacial diffusion (same as in bulk). Surface roughness can slow diffusion and delay nucleation, and even highly attractive surfaces may thus lead to retardation of fibrillar growth. (49) Lastly, local inhomogeneities can result in local nucleation and alter the overall effect of the surface. (50) Despite these approximations, the present phenomenological model is in very good agreement with experimental data and provides a molecular picture for the underlying mechanisms.

Conclusion

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We have investigated surfaces with different peptide binding strengths and their influence on fibril formation. The observed effect is nonlinear. While weakly attractive surfaces lead to retardation of nucleation and growth, strongly attractive surfaces lead to acceleration of the fibril formation. The molecular rationalization lies in a competition between two processes: surface and bulk nucleation, which lead to the observed growth. The surface effect is dependent on the intrinsic aggregation characteristics of peptides and proteins: A surface with weak monomer attraction retards the fibril formation of peptides with a high tendency for fibril formation, while the same surface accelerates the fibril formation of peptides with a low propensity for fibril formation. The presented study rationalizes current and previous experimental data for a number of different systems, and together with the fact that we use a generic, coarse grained model within a rigorous statistical mechanical framework, we expect the proposed molecular mechanism to be general and broadly applicable.

Supporting Information

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This information contains all experimental and simulation growth profiles (Figures S1–S3). This material is available free of charge via the Internet at http://pubs.acs.org.

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Author Information

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  • Corresponding Author
    • Robert Vácha - National Centre for Biomolecular Research, Faculty of Science and CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00 Brno-Bohunice, Czech Republic
  • Authors
    • Sara Linse - Division of Biochemistry and Structural Biology, Lund University, Lund, Sweden
    • Mikael Lund - Division of Theoretical Chemistry, Lund University, Lund, Sweden
  • Notes
    The authors declare no competing financial interest.

Acknowledgment

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This work was supported by the Swedish Research Council and its Linneaus Centre OMM (organizing molecular matter); the Swedish Foundation for Strategic Research; eSSENCE, nanometer structure consortium, and LUNARC at Lund University; the Czech Science Foundation (Grant 14-12598S); the EU seventh Framework (Contract No. 286154 - SYLICA); the European Regional Development Fund (CZ.1.05/1.1.00/02.0068 CEITEC); and MetaCentrum LM2010005.

References

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This article references 50 other publications.

  1. 1
    Tang, F.; Li, L.; Chen, D. Adv. Mater. 2012, 24, 1504 1534
  2. 2
    Zahmakran, M.; Özkar, S. Nanoscale 2011, 3, 3462 3481
  3. 3
    Spyratou, E.; Makropoulou, M.; Mourelatou, E.; Demetzos, C. Cancer Letters 2012, 327, 111 122
  4. 4
    Linse, S.; Cabaleiro-Lago, C.; Xue, W.-F.; Lynch, I.; Lindman, S.; Thulin, E.; Radford, S. E.; Dawson, K. A. Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 8691 8696
  5. 5
    Lynch, I.; Dawson, K. A.; Linse, S. Sci. STKE 2006, 2006, pe14
  6. 6
    Rabe, M.; Soragni, A.; Reynolds, N. P.; Verdes, D.; Liverani, E.; Riek, R.; Seeger, S. ACS Chem. Neurosci. 2013, 4, 408 17
  7. 7
    Grey, M.; Linse, S.; Nilsson, H.; Brundin, P.; Sparr, E. J. Parkinsons Dis. 2011, 1, 359 371
  8. 8
    Pandey, A. P.; Haque, F.; Rochet, J.-C.; Hovis, J. S. Biophys. J. 2009, 96, 540 51
  9. 9
    Jo, E.; McLaurin, J.; Yip, C. M.; St. George-Hyslop, P.; Fraser, P. E. J. Biol. Chem. 2000, 275, 34328 34
  10. 10
    Butterfield, S. M.; Lashuel, H. a. Angew. Chem., Int. Ed. 2010, 49, 5628 54
  11. 11
    Relini, A.; Cavalleri, O.; Rolandi, R.; Gliozzi, A. Chem. Phys. Lipids 2009, 158, 1 9
  12. 12
    Giehm, L.; Lorenzen, N.; Otzen, D. E. Methods (San Diego, Calif.) 2011, 53, 295 305
  13. 13
    Pronchik, J.; He, X.; Giurleo, J. T.; Talaga, D. S. J. Am. Chem. Soc. 2010, 132, 9797 803
  14. 14
    Buell, A. K.; Galvagnion, C.; Gaspar, R.; Sparr, E.; Vendruscolo, M.; Knowles, T. P. J.; Linse, S.; Dobson, C. M. Proc. Natl. Acad. Sci. U.S.A. 2014,  DOI: 10.1073/pnas.1315346111
  15. 15
    Hellstrand, E.; Boland, B.; Walsh, D. M.; Linse, S. ACS Chem. Neurosci. 2010, 1, 13 18
  16. 16
    Cohen, S. I. A.; Linse, S.; Luheshi, L. M.; Hellstrand, E.; White, D. A.; Rajah, L.; Otzen, D. E.; Vendruscolo, M.; Dobson, C. M.; Knowles, T. P. J. Proc. Natl. Acad. Sci. U.S.A. 2013, 9758 9763
  17. 17
    Arosio, P.; Cukalevski, R.; Frohm, B.; Knowles, T. P. J.; Linse, S. J. Am. Chem. Soc. 2014, 136, 219 225
  18. 18
    Meisl, G.; Yang, X.; Hellstrand, E.; Frohm, B.; Kirkegaard, J. B.; Cohen, S. I. A.; Dobson, C. M.; Linse, S.; Knowles, T. P. J. Proc. Natl. Acad. Sci. U.S.A. 2014, 111, 9384 9389
  19. 19
    Cabaleiro-Lago, C.; Quinlan-Pluck, F.; Lynch, I.; Dawson, K. A.; Linse, S. ACS Chem. Neurosci. 2010, 1, 279 87
  20. 20
    Cabaleiro-Lago, C.; Szczepankiewicz, O.; Linse, S. Langmuir 2012, 28, 1852 1857
  21. 21
    Cabaleiro-Lago, C.; Quinlan-Pluck, F.; Lynch, I.; Lindman, S.; Minogue, A. M.; Thulin, E.; Walsh, D. M.; Dawson, K. A.; Linse, S. J. Am. Chem. Soc. 2008, 130, 15437 43
  22. 22
    Cabaleiro-Lago, C.; Lynch, I.; Dawson, K. A.; Linse, S. Langmuir 2010, 26, 3453 61
  23. 23
    Hellstrand, E.; Sparr, E.; Linse, S. Biophys. J. 2010, 98, 2206 14
  24. 24
    Booth, D. R.; Sunde, M.; Bellotti, V.; Robinson, C. V.; Hutchinson, W. L.; Fraser, P. E.; Hawkins, P. N.; Dobson, C. M.; Radford, S. E.; Blake, C. C.; Pepys, M. B. Nature 1997, 385, 787 93
  25. 25
    Szczepankiewicz, O.; Cabaleiro-Lago, C.; Tartaglia, G. G.; Vendruscolo, M.; Hunter, T.; Hunter, G. J.; Nilsson, H.; Thulin, E.; Linse, S. Mol. BioSyst. 2011, 7, 521 32
  26. 26
    Vácha, R.; Frenkel, D. Biophys. J. 2011, 101, 1432 1439
  27. 27
    Linse, B.; Linse, S. Mol. BioSyst. 2011, 7, 2296 2303
  28. 28
    Bieler, N. S.; Knowles, T. P. J.; Frenkel, D.; Vácha, R. PLoS Comput. Biol. 2012, 8, e1002692
  29. 29
    Kikuchi, K.; Yoshida, M.; Maekawa, T.; Watanabe, H. Chem. Phys. Lett. 1991, 185, 335 338
  30. 30
    Fichthorn, K. A.; Weinberg, W. H. J. Chem. Phys. 1991, 95, 1090 1096
  31. 31
    Sanz, E.; Marenduzzo, D. J. Chem. Phys. 2010, 132, 194102
  32. 32
    Jabbari-Farouji, S.; Trizac, E. J. Chem. Phys. 2012, 137, 054107
  33. 33
    Bora, R. P.; Prabhakar, R. J. Chem. Phys. 2009, 131, 155103
  34. 34
    Berthelot, D.; Van der Waals; Leduc, A. Comptes Rendus Hebdomadaires des Seances de l’Academie des Sciences 1898, 1703 1706
  35. 35
    Walsh, D. M.; Thulin, E.; Minogue, A. M.; Gustavsson, N.; Pang, E.; Teplow, D. B.; Linse, S. FEBS J. 2009, 276, 1266 81
  36. 36
    Zhai, J.; Lee, T.-H.; Small, D. H.; Aguilar, M.-I. Biochemistry 2012, 51, 1070 8
  37. 37
    Knight, J. D.; Miranker, A. D. J. Mol. Biol. 2004, 341, 1175 1187
  38. 38
    Friedman, R.; Pellarin, R.; Caflisch, A. J. Mol. Biol. 2009, 387, 407 415
  39. 39
    Volles, M. J.; Lee, S.-J.; Rochet, J.-C.; Shtilerman, M. D.; Ding, T. T.; Kessler, J. C.; Lansbury, P. T. Biochemistry 2001, 40, 7812 7819
  40. 40
    Sharp, J. S.; Forrest, J. A.; Jones, R. A. L. Biochemistry 2002, 41, 15810 15819
  41. 41
    Pellarin, R.; Caflisch, A. J. Mol. Biol. 2006, 360, 882 892
  42. 42
    Losic, D.; Martin, L. L.; Aguilar, M.-I.; Small, D. H. Biopolymers 2006, 84, 519 526
  43. 43
    Auer, S.; Trovato, A.; Vendruscolo, M. PLoS Comput. Biol. 2009, 5, e1000458
  44. 44
    Morriss-Andrews, A.; Bellesia, G.; Shea, J.-E. J. Chem. Phys. 2011, 135, 085102
  45. 45
    Morriss-Andrews, A.; Shea, J.-E. J. Chem. Phys. 2012, 136, 065103
  46. 46
    Yu, X.; Wang, Q.; Lin, Y.; Zhao, J.; Zhao, C.; Zheng, J. Langmuir 2012, 28, 6595 6605
  47. 47
    Wadhwani, P.; Strandberg, E.; Heidenreich, N.; Bürck, J.; Fanghänel, S.; Ulrich, A. S. J. Am. Chem. Soc. 2012, 134, 6512 6515
  48. 48
    Campioni, S.; Carret, G.; Jordens, S.; Nicoud, L.; Mezzenga, R.; Riek, R. J. Am. Chem. Soc. 2014, 136, 2866 2875
  49. 49
    Shen, L.; Adachi, T.; Vanden Bout, D.; Zhu, X.-Y. J. Am. Chem. Soc. 2012, 134, 14172 14178
  50. 50
    Losic, D.; Martin, L. L.; Aguilar, M.-I.; Small, D. H. Biopolymers 2006, 84, 519 26

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  19. Yi-Chih Lin, Chen Li, Zahra Fakhraai. Kinetics of Surface-Mediated Fibrillization of Amyloid-β (12–28) Peptides. Langmuir 2018, 34 (15) , 4665-4672. https://doi.org/10.1021/acs.langmuir.7b02744
  20. Jia-Jung Ho, Ayanjeet Ghosh, Tianqi O. Zhang, and Martin T. Zanni . Heterogeneous Amyloid β-Sheet Polymorphs Identified on Hydrogen Bond Promoting Surfaces Using 2D SFG Spectroscopy. The Journal of Physical Chemistry A 2018, 122 (5) , 1270-1282. https://doi.org/10.1021/acs.jpca.7b11934
  21. Fulvio Grigolato, Claudio Colombo, Raffaele Ferrari, Lenka Rezabkova, and Paolo Arosio . Mechanistic Origin of the Combined Effect of Surfaces and Mechanical Agitation on Amyloid Formation. ACS Nano 2017, 11 (11) , 11358-11367. https://doi.org/10.1021/acsnano.7b05895
  22. Karen E. Woods, Y. Randika Perera, Mackenzie B. Davidson, Chloe A. Wilks, Dinesh K. Yadav, and Nicholas C. Fitzkee . Understanding Protein Structure Deformation on the Surface of Gold Nanoparticles of Varying Size. The Journal of Physical Chemistry C 2016, 120 (49) , 27944-27953. https://doi.org/10.1021/acs.jpcc.6b08089
  23. Ke Sherry Li, Don L. Rempel, and Michael L. Gross . Conformational-Sensitive Fast Photochemical Oxidation of Proteins and Mass Spectrometry Characterize Amyloid Beta 1–42 Aggregation. Journal of the American Chemical Society 2016, 138 (37) , 12090-12098. https://doi.org/10.1021/jacs.6b07543
  24. Khurram Shezad, Kejun Zhang, Mubashir Hussain, Hai Dong, Chuanxin He, Xiangjun Gong, Xiaolin Xie, Jintao Zhu, and Lei Shen . Surface Roughness Modulates Diffusion and Fibrillation of Amyloid-β Peptide. Langmuir 2016, 32 (32) , 8238-8244. https://doi.org/10.1021/acs.langmuir.6b01756
  25. Alireza Abdolvahabi, Yunhua Shi, Aleksandra Chuprin, Sanaz Rasouli, and Bryan F. Shaw . Stochastic Formation of Fibrillar and Amorphous Superoxide Dismutase Oligomers Linked to Amyotrophic Lateral Sclerosis. ACS Chemical Neuroscience 2016, 7 (6) , 799-810. https://doi.org/10.1021/acschemneuro.6b00048
  26. Irem Nasir, Sara Linse, and Celia Cabaleiro-Lago . Fluorescent Filter-Trap Assay for Amyloid Fibril Formation Kinetics in Complex Solutions. ACS Chemical Neuroscience 2015, 6 (8) , 1436-1444. https://doi.org/10.1021/acschemneuro.5b00104
  27. Volodymyr V. Shvadchak, Mireille M. A. E. Claessens, and Vinod Subramaniam . Fibril Breaking Accelerates α-Synuclein Fibrillization. The Journal of Physical Chemistry B 2015, 119 (5) , 1912-1918. https://doi.org/10.1021/jp5111604
  28. Fei Tao, Qian Han, Peng Yang. Interface-mediated protein aggregation. Chemical Communications 2023, 59 (95) , 14093-14109. https://doi.org/10.1039/D3CC04311H
  29. Ashutosh Sinha, Nico Kummer, Tingting Wu, Kevin J. De France, Dorothea Pinotsi, Janine L. Thoma, Peter Fischer, Silvia Campioni, Gustav Nyström. Nanocellulose aerogels as 3D amyloid templates. Nanoscale 2023, 15 (44) , 17785-17792. https://doi.org/10.1039/D3NR02109B
  30. Soumik Ray, Thomas O. Mason, Lars Boyens-Thiele, Azad Farzadfard, Jacob Aunstrup Larsen, Rasmus K. Norrild, Nadin Jahnke, Alexander K. Buell. Mass photometric detection and quantification of nanoscale α-synuclein phase separation. Nature Chemistry 2023, 15 (9) , 1306-1316. https://doi.org/10.1038/s41557-023-01244-8
  31. David L. Cheung. Aggregation of an Amyloidogenic Peptide on Gold Surfaces. Biomolecules 2023, 13 (8) , 1261. https://doi.org/10.3390/biom13081261
  32. Wenbo Zhang, Ruonan Wang, Mingwei Liu, Shucong Li, Asher E. Vokoun, Weichen Deng, Robert L. Dupont, Feiyi Zhang, Shuyuan Li, Yang Wang, Zhenyu Liu, Yongfang Zheng, Shuli Liu, Yanlian Yang, Chen Wang, Lanlan Yu, Yuxing Yao, Xiaoguang Wang, Chenxuan Wang. Single-molecule visualization determines conformational substate ensembles in β-sheet–rich peptide fibrils. Science Advances 2023, 9 (27) https://doi.org/10.1126/sciadv.adg7943
  33. Thomas C. T. Michaels, Daoyuan Qian, Anđela Šarić, Michele Vendruscolo, Sara Linse, Tuomas P. J. Knowles. Amyloid formation as a protein phase transition. Nature Reviews Physics 2023, 5 (7) , 379-397. https://doi.org/10.1038/s42254-023-00598-9
  34. Debabrata Maity. Recent advances in the modulation of amyloid protein aggregation using the supramolecular host-guest approaches. Biophysical Chemistry 2023, 297 , 107022. https://doi.org/10.1016/j.bpc.2023.107022
  35. Torsten John, Stefania Piantavigna, Tiara J. A. Dealey, Bernd Abel, Herre Jelger Risselada, Lisandra L. Martin. Lipid oxidation controls peptide self-assembly near membranes through a surface attraction mechanism. Chemical Science 2023, 14 (14) , 3730-3741. https://doi.org/10.1039/D3SC00159H
  36. Yijia Guan, Weijie Cao, Tao Li, Jieyi Qin, Qilong He, Xiaofeng Jia, Yuqing Li, Yuhua Zhang, Jianguo Liao. NIR-excited upconversion nanoparticles used for targeted inhibition of Aβ42 monomers and disassembly of Aβ42 fibrils. Journal of Materials Chemistry B 2023, 11 (7) , 1445-1455. https://doi.org/10.1039/D2TB02104H
  37. Marco A. Blanco. Computational models for studying physical instabilities in high concentration biotherapeutic formulations. mAbs 2022, 14 (1) https://doi.org/10.1080/19420862.2022.2044744
  38. Thomas C. T. Michaels, L. Mahadevan, Christoph A. Weber. Enhanced potency of aggregation inhibitors mediated by liquid condensates. Physical Review Research 2022, 4 (4) https://doi.org/10.1103/PhysRevResearch.4.043173
  39. Tanja Weiffert, Georg Meisl, Samo Curk, Risto Cukalevski, Anđela Šarić, Tuomas P. J. Knowles, Sara Linse. Influence of denaturants on amyloid β42 aggregation kinetics. Frontiers in Neuroscience 2022, 16 https://doi.org/10.3389/fnins.2022.943355
  40. Margherita Bini, Giorgia Brancolini, Valentina Tozzini. Aggregation behavior of nanoparticles: Revisiting the phase diagram of colloids. Frontiers in Molecular Biosciences 2022, 9 https://doi.org/10.3389/fmolb.2022.986223
  41. Chunling Zhu, Yuheng Yang, Xiaowen Li, Xingyu Chen, Xucong Lin, Xiaoping Wu. Develop potential multi-target drugs by self-assembly of quercetin with amino acids and metal ion to achieve significant efficacy in anti-Alzheimer’s disease. Nano Research 2022, 15 (6) , 5173-5182. https://doi.org/10.1007/s12274-021-4066-8
  42. Nguyen Truong Co, Mai Suan Li, Pawel Krupa. Computational Models for the Study of Protein Aggregation. 2022, 51-78. https://doi.org/10.1007/978-1-0716-1546-1_4
  43. Bo Jiang, Angel A. Martí. Probing Amyloid Nanostructures Using Photoluminescent Metal Complexes. European Journal of Inorganic Chemistry 2021, 2021 (43) , 4408-4424. https://doi.org/10.1002/ejic.202100422
  44. Ajit Singh, Sandeep Kumar Maharana, Rahul Shukla, Prashant Kesharwani. Nanotherapeutics approaches for targeting alpha synuclien protein in the management of Parkinson disease. Process Biochemistry 2021, 110 , 181-194. https://doi.org/10.1016/j.procbio.2021.08.008
  45. Caroline Haikal, Lei Ortigosa-Pascual, Zahra Najarzadeh, Katja Bernfur, Alexander Svanbergsson, Daniel E. Otzen, Sara Linse, Jia-Yi Li. The Bacterial Amyloids Phenol Soluble Modulins from Staphylococcus aureus Catalyze Alpha-Synuclein Aggregation. International Journal of Molecular Sciences 2021, 22 (21) , 11594. https://doi.org/10.3390/ijms222111594
  46. Peter Niraj Nirmalraj, Thomas Schneider, Ansgar Felbecker. Spatial organization of protein aggregates on red blood cells as physical biomarkers of Alzheimer’s disease pathology. Science Advances 2021, 7 (39) https://doi.org/10.1126/sciadv.abj2137
  47. Parveen Salahuddin, Rizwan Hasan Khan, Mohammad Furkan, Vladimir N. Uversky, Zeyaul Islam, Munazza Tamkeen Fatima. Mechanisms of amyloid proteins aggregation and their inhibition by antibodies, small molecule inhibitors, nano-particles and nano-bodies. International Journal of Biological Macromolecules 2021, 186 , 580-590. https://doi.org/10.1016/j.ijbiomac.2021.07.056
  48. Andreas Tapia-Arellano, Eduardo Gallardo-Toledo, Freddy Celis, Rodrigo Rivera, Italo Moglia, Marcelo Campos, Natàlia Carulla, Mauricio Baez, Marcelo J. Kogan. The curvature of gold nanoparticles influences the exposure of amyloid-β and modulates its aggregation process. Materials Science and Engineering: C 2021, 128 , 112269. https://doi.org/10.1016/j.msec.2021.112269
  49. Wei Fan, Xiao-dong Chen, Li-ming Liu, Ning Chen, Xiao-guo Zhou, Zhi-hong Zhang, Shi-lin Liu. Concentration-dependent influence of silver nanoparticles on amyloid fibrillation kinetics of hen egg-white lysozyme. Chinese Journal of Chemical Physics 2021, 34 (4) , 393-405. https://doi.org/10.1063/1674-0068/cjcp2104069
  50. Cameron Wells, Samuel Brennan, Matt Keon, Lezanne Ooi. The role of amyloid oligomers in neurodegenerative pathologies. International Journal of Biological Macromolecules 2021, 181 , 582-604. https://doi.org/10.1016/j.ijbiomac.2021.03.113
  51. Andreas M. Küffner, Miriam Linsenmeier, Fulvio Grigolato, Marc Prodan, Remo Zuccarini, Umberto Capasso Palmiero, Lenka Faltova, Paolo Arosio. Sequestration within biomolecular condensates inhibits Aβ-42 amyloid formation. Chemical Science 2021, 12 (12) , 4373-4382. https://doi.org/10.1039/D0SC04395H
  52. Nguyen Co, Mai Li. Effect of Surface Roughness on Aggregation of Polypeptide Chains: A Monte Carlo Study. Biomolecules 2021, 11 (4) , 596. https://doi.org/10.3390/biom11040596
  53. Yijia Guan, Dongqin Yu, Hanjun Sun, Jinsong Ren, Xiaogang Qu. Aβ aggregation behavior at interfaces with switchable wettability: a bioinspired perspective to understand amyloid formation. Chemical Communications 2021, 57 (21) , 2641-2644. https://doi.org/10.1039/D0CC07546A
  54. Fulvio Grigolato, Paolo Arosio. The role of surfaces on amyloid formation. Biophysical Chemistry 2021, 270 , 106533. https://doi.org/10.1016/j.bpc.2020.106533
  55. Ana B. Caballero, Patrick Gamez. Nanochaperone‐Based Strategies to Control Protein Aggregation Linked to Conformational Diseases. Angewandte Chemie 2021, 133 (1) , 41-52. https://doi.org/10.1002/ange.202007924
  56. Ana B. Caballero, Patrick Gamez. Nanochaperone‐Based Strategies to Control Protein Aggregation Linked to Conformational Diseases. Angewandte Chemie International Edition 2021, 60 (1) , 41-52. https://doi.org/10.1002/anie.202007924
  57. Yuhuan Li, Huayuan Tang, Nicholas Andrikopoulos, Ibrahim Javed, Luca Cecchetto, Aparna Nandakumar, Aleksandr Kakinen, Thomas P. Davis, Feng Ding, Pu Chun Ke. The Membrane Axis of Alzheimer's Nanomedicine. Advanced NanoBiomed Research 2021, 1 (1) https://doi.org/10.1002/anbr.202000040
  58. B. Fanselow, F. Hartmann, M. Zschocke, T. Thalheim, J. Adler, D. Huster, F. Cichos. Cross-Seeding of Amyloid-β in an Optically Controlled Thermophoretic Trap. 2021, ATu1D.3. https://doi.org/10.1364/OMA.2021.ATu1D.3
  59. Johannes Krausser, Tuomas P. J. Knowles, Anđela Šarić. Physical mechanisms of amyloid nucleation on fluid membranes. Proceedings of the National Academy of Sciences 2020, 117 (52) , 33090-33098. https://doi.org/10.1073/pnas.2007694117
  60. Mariapina D’Onofrio, Francesca Munari, Michael Assfalg. Alpha-Synuclein—Nanoparticle Interactions: Understanding, Controlling and Exploiting Conformational Plasticity. Molecules 2020, 25 (23) , 5625. https://doi.org/10.3390/molecules25235625
  61. Qian Han, Fei Tao, Yan Xu, Hao Su, Facui Yang, Volker Körstgens, Peter Müller‐Buschbaum, Peng Yang. Tuning Chain Relaxation from an Amorphous Biopolymer Film to Crystals by Removing Air/Water Interface Limitations. Angewandte Chemie 2020, 132 (45) , 20367-20375. https://doi.org/10.1002/ange.202008999
  62. Qian Han, Fei Tao, Yan Xu, Hao Su, Facui Yang, Volker Körstgens, Peter Müller‐Buschbaum, Peng Yang. Tuning Chain Relaxation from an Amorphous Biopolymer Film to Crystals by Removing Air/Water Interface Limitations. Angewandte Chemie International Edition 2020, 59 (45) , 20192-20200. https://doi.org/10.1002/anie.202008999
  63. Pablo Gracia, José D. Camino, Laura Volpicelli-Daley, Nunilo Cremades. Multiplicity of α-Synuclein Aggregated Species and Their Possible Roles in Disease. International Journal of Molecular Sciences 2020, 21 (21) , 8043. https://doi.org/10.3390/ijms21218043
  64. Xintong Tang, Guanbin Gao, Ting Zhang, Jianhang Li, Meng Yu, Meng He, Taolei Sun. Charge effects at nano-bio interfaces: a model of charged gold nanoclusters on amylin fibrillation. Nanoscale 2020, 12 (36) , 18834-18843. https://doi.org/10.1039/D0NR03877F
  65. Alexander I. P. Taylor, Lianne D. Gahan, Buddhapriya Chakrabarti, Rosemary A. Staniforth. A two-step biopolymer nucleation model shows a nonequilibrium critical point. The Journal of Chemical Physics 2020, 153 (2) https://doi.org/10.1063/5.0009394
  66. Roberto Tira, Elena De Cecco, Valentina Rigamonti, Carlo Santambrogio, Carlo Giorgio Barracchia, Francesca Munari, Alessandro Romeo, Giuseppe Legname, Davide Prosperi, Rita Grandori, Michael Assfalg. Dynamic molecular exchange and conformational transitions of alpha-synuclein at the nano-bio interface. International Journal of Biological Macromolecules 2020, 154 , 206-216. https://doi.org/10.1016/j.ijbiomac.2020.03.118
  67. Juami Hermine Mariama van Gils, Erik van Dijk, Alessia Peduzzo, Alexander Hofmann, Nicola Vettore, Marie P. Schützmann, Georg Groth, Halima Mouhib, Daniel E. Otzen, Alexander K. Buell, Sanne Abeln, . The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth. PLOS Computational Biology 2020, 16 (5) , e1007767. https://doi.org/10.1371/journal.pcbi.1007767
  68. Hisashi Okumura, Satoru G. Itoh. Molecular dynamics simulations of amyloid-β(16–22) peptide aggregation at air–water interfaces. The Journal of Chemical Physics 2020, 152 (9) https://doi.org/10.1063/1.5131848
  69. James Brown, Mathew H. Horrocks. A sticky situation: Aberrant protein–protein interactions in Parkinson’s disease. Seminars in Cell & Developmental Biology 2020, 99 , 65-77. https://doi.org/10.1016/j.semcdb.2018.05.006
  70. Yan Xu, Yongchun Liu, Xinyi Hu, Rongrong Qin, Hao Su, Juling Li, Peng Yang. The Synthesis of a 2D Ultra‐Large Protein Supramolecular Nanofilm by Chemoselective Thiol–Disulfide Exchange and its Emergent Functions. Angewandte Chemie 2020, 132 (7) , 2872-2881. https://doi.org/10.1002/ange.201912848
  71. Yan Xu, Yongchun Liu, Xinyi Hu, Rongrong Qin, Hao Su, Juling Li, Peng Yang. The Synthesis of a 2D Ultra‐Large Protein Supramolecular Nanofilm by Chemoselective Thiol–Disulfide Exchange and its Emergent Functions. Angewandte Chemie International Edition 2020, 59 (7) , 2850-2859. https://doi.org/10.1002/anie.201912848
  72. Yang Cao, Xuan Tang, Miao Yuan, Wei Han. Computational studies of protein aggregation mediated by amyloid: Fibril elongation and secondary nucleation. 2020, 461-504. https://doi.org/10.1016/bs.pmbts.2019.12.008
  73. Yanping Dai, Mingxi Zhang, Xiulei Shi, Kang Wang, Guanbin Gao, Lei Shen, Taolei Sun. Kinetic study of Aβ(1-42) amyloidosis in the presence of ganglioside-containing vesicles. Colloids and Surfaces B: Biointerfaces 2020, 185 , 110615. https://doi.org/10.1016/j.colsurfb.2019.110615
  74. Ricardo Gaspar, Mikael Lund, Emma Sparr, Sara Linse. Anomalous Salt Dependence Reveals an Interplay of Attractive and Repulsive Electrostatic Interactions in α-synuclein Fibril Formation. QRB Discovery 2020, 1 https://doi.org/10.1017/qrd.2020.7
  75. Xi Li, Chunhua Dong, Marion Hoffmann, Craig R. Garen, Leonardo M. Cortez, Nils O. Petersen, Michael T. Woodside. Early stages of aggregation of engineered α-synuclein monomers and oligomers in solution. Scientific Reports 2019, 9 (1) https://doi.org/10.1038/s41598-018-37584-6
  76. Nicoló Riboni, Alessandro Quaranta, Hitesh V. Motwani, Nicklas Österlund, Astrid Gräslund, Federica Bianchi, Leopold L. Ilag. Solvent-Assisted Paper Spray Ionization Mass Spectrometry (SAPSI-MS) for the Analysis of Biomolecules and Biofluids. Scientific Reports 2019, 9 (1) https://doi.org/10.1038/s41598-019-45358-x
  77. Guilherme A. P. de Oliveira, Jerson L. Silva. Alpha-synuclein stepwise aggregation reveals features of an early onset mutation in Parkinson’s disease. Communications Biology 2019, 2 (1) https://doi.org/10.1038/s42003-019-0598-9
  78. Tomas Sneideris, Andrius Sakalauskas, Rebecca Sternke-Hoffmann, Alessia Peduzzo, Mantas Ziaunys, Alexander K. Buell, Vytautas Smirnovas. The Environment Is a Key Factor in Determining the Anti-Amyloid Efficacy of EGCG. Biomolecules 2019, 9 (12) , 855. https://doi.org/10.3390/biom9120855
  79. Sneha Menon, Neelanjana Sengupta. Influence of crowding and surfaces on protein amyloidogenesis: A thermo-kinetic perspective. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2019, 1867 (10) , 941-953. https://doi.org/10.1016/j.bbapap.2019.03.009
  80. Giorgia Brancolini, Hender Lopez, Stefano Corni, Valentina Tozzini. Low-Resolution Models for the Interaction Dynamics of Coated Gold Nanoparticles with β2-microglobulin. International Journal of Molecular Sciences 2019, 20 (16) , 3866. https://doi.org/10.3390/ijms20163866
  81. Giorgia Brancolini, Valentina Tozzini. Building Minimalist Models for Functionalized Metal Nanoparticles. Frontiers in Molecular Biosciences 2019, 6 https://doi.org/10.3389/fmolb.2019.00050
  82. Yunxiang Sun, Aleksandr Kakinen, Chi Zhang, Ye Yang, Ava Faridi, Thomas P. Davis, Weiguo Cao, Pu Chun Ke, Feng Ding. Amphiphilic surface chemistry of fullerenols is necessary for inhibiting the amyloid aggregation of alpha-synuclein NACore. Nanoscale 2019, 11 (24) , 11933-11945. https://doi.org/10.1039/C9NR02407G
  83. Giorgia Brancolini, Valentina Tozzini. Multiscale modeling of proteins interaction with functionalized nanoparticles. Current Opinion in Colloid & Interface Science 2019, 41 , 66-73. https://doi.org/10.1016/j.cocis.2018.12.001
  84. Giorgia Brancolini, Luca Bellucci, Maria Celeste Maschio, Rosa Di Felice, Stefano Corni. The interaction of peptides and proteins with nanostructures surfaces: a challenge for nanoscience. Current Opinion in Colloid & Interface Science 2019, 41 , 86-94. https://doi.org/10.1016/j.cocis.2018.12.003
  85. Ricardo Gaspar, Jon Pallbo, Ulrich Weininger, Sara Linse, Emma Sparr. Reprint of “Ganglioside lipids accelerate α-synuclein amyloid formation”. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2019, 1867 (5) , 508-518. https://doi.org/10.1016/j.bbapap.2019.02.003
  86. Marcel Falke, Julian Victor, Michael M. Wördehoff, Alessia Peduzzo, Tao Zhang, Gunnar F. Schröder, Alexander K. Buell, Wolfgang Hoyer, Manuel Etzkorn. α-Synuclein-derived lipoparticles in the study of α-Synuclein amyloid fibril formation. Chemistry and Physics of Lipids 2019, 220 , 57-65. https://doi.org/10.1016/j.chemphyslip.2019.02.009
  87. Sara Linse. Mechanism of amyloid protein aggregation and the role of inhibitors. Pure and Applied Chemistry 2019, 91 (2) , 211-229. https://doi.org/10.1515/pac-2018-1017
  88. Bin Li, Ran Zhang, Xinghua Shi. Aggregation of amyloid peptides into fibrils driven by nanoparticles and their curvature effect. Physical Chemistry Chemical Physics 2019, 21 (4) , 1784-1790. https://doi.org/10.1039/C8CP07211F
  89. Tommy Nylander, Thomas Arnebrant, Marité Cárdenas, Martin Bos, Peter Wilde. Protein/Emulsifier Interactions. 2019, 101-192. https://doi.org/10.1007/978-3-030-29187-7_5
  90. Jens Kvist Madsen, Lise Giehm, Daniel E. Otzen. The Use of Surfactants to Solubilise a Glucagon Analogue. Pharmaceutical Research 2018, 35 (12) https://doi.org/10.1007/s11095-018-2494-2
  91. Thibault Viennet, Michael M. Wördehoff, Boran Uluca, Chetan Poojari, Hamed Shaykhalishahi, Dieter Willbold, Birgit Strodel, Henrike Heise, Alexander K. Buell, Wolfgang Hoyer, Manuel Etzkorn. Structural insights from lipid-bilayer nanodiscs link α-Synuclein membrane-binding modes to amyloid fibril formation. Communications Biology 2018, 1 (1) https://doi.org/10.1038/s42003-018-0049-z
  92. Torsten John, Anika Gladytz, Clemens Kubeil, Lisandra L. Martin, Herre Jelger Risselada, Bernd Abel. Impact of nanoparticles on amyloid peptide and protein aggregation: a review with a focus on gold nanoparticles. Nanoscale 2018, 10 (45) , 20894-20913. https://doi.org/10.1039/C8NR04506B
  93. Ricardo Gaspar, Jon Pallbo, Ulrich Weininger, Sara Linse, Emma Sparr. Ganglioside lipids accelerate α-synuclein amyloid formation. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2018, 1866 (10) , 1062-1072. https://doi.org/10.1016/j.bbapap.2018.07.004
  94. Mayu S. Terakawa, Yuxi Lin, Misaki Kinoshita, Shingo Kanemura, Dai Itoh, Toshihiko Sugiki, Masaki Okumura, Ayyalusamy Ramamoorthy, Young-Ho Lee. Impact of membrane curvature on amyloid aggregation. Biochimica et Biophysica Acta (BBA) - Biomembranes 2018, 1860 (9) , 1741-1764. https://doi.org/10.1016/j.bbamem.2018.04.012
  95. James W. P. Brown, Georg Meisl, Tuomas P. J. Knowles, Alexander K. Buell, Christopher M. Dobson, Céline Galvagnion. Kinetic barriers to α-synuclein protofilament formation and conversion into mature fibrils. Chemical Communications 2018, 54 (56) , 7854-7857. https://doi.org/10.1039/C8CC03002B
  96. Michele Vitali, Valentina Rigamonti, Antonino Natalello, Barbara Colzani, Svetlana Avvakumova, Stefania Brocca, Carlo Santambrogio, Joanna Narkiewicz, Giuseppe Legname, Miriam Colombo, Davide Prosperi, Rita Grandori. Conformational properties of intrinsically disordered proteins bound to the surface of silica nanoparticles. Biochimica et Biophysica Acta (BBA) - General Subjects 2018, 1862 (7) , 1556-1564. https://doi.org/10.1016/j.bbagen.2018.03.026
  97. Jonathan A. Fauerbach, Thomas M. Jovin. Pre-aggregation kinetics and intermediates of α-synuclein monitored by the ESIPT probe 7MFE. European Biophysics Journal 2018, 47 (4) , 345-362. https://doi.org/10.1007/s00249-017-1272-0
  98. Thomas C.T. Michaels, Anđela Šarić, Johnny Habchi, Sean Chia, Georg Meisl, Michele Vendruscolo, Christopher M. Dobson, Tuomas P.J. Knowles. Chemical Kinetics for Bridging Molecular Mechanisms and Macroscopic Measurements of Amyloid Fibril Formation. Annual Review of Physical Chemistry 2018, 69 (1) , 273-298. https://doi.org/10.1146/annurev-physchem-050317-021322
  99. Jia-Jung Ho, Ayanjeet Ghosh, Tianqi O. Zhang, Martin T. Zanni. Heterogeneous Amyloid β-Sheet Polymorphs Identified on Hydrogen Bond Promoting Surfaces Using 2D SFG Spectroscopy. The Journal of Physical Chemistry C 2018, 105 https://doi.org/10.1021/acs.jpcc.7b11934
  100. Mattias Törnquist, Thomas C. T. Michaels, Kalyani Sanagavarapu, Xiaoting Yang, Georg Meisl, Samuel I. A. Cohen, Tuomas P. J. Knowles, Sara Linse. Secondary nucleation in amyloid formation. Chemical Communications 2018, 54 (63) , 8667-8684. https://doi.org/10.1039/C8CC02204F
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  • Abstract

    Figure 1

    Figure 1. (Left) Two-state peptide model used in dynamic Monte Carlo simulations in the presence of planar surfaces (green). Kinetic and thermodynamic properties are described by the parameters (i) → (iv), discussed in the section “Surface Effect for Peptide Mutants”, as well as through a surface attraction strength, K (Table 1). (Right) Representative snapshot from our simulation where orange/gray are particles in the fibril state, while blue/red particles are in the random coil state.

    Figure 2

    Figure 2. Interaction energy between a weakly attractive surface (WA) and the α state of the peptide. The left figure depicts the distance dependence of the interaction when PSC is parallel to the wall oriented with its patch toward the wall. The right figure displays the orientation dependence of the interaction when PSC is parallel to the wall in distance close to the interaction minimum.

    Figure 3

    Figure 3. (Top) Oligomer growth profiles in the presence of planar surfaces with increasing binding strengths (see Table 1) and monomer concentration (colored lines). Each profile represents an average from at least three independent simulations. (Bottom) Corresponding snapshots at an initial monomer concentration of 5.3 mM.

    Figure 4

    Figure 4. (Left) Half times, τhalf, of the fibril formation in systems with varying monomer affinities for the surface. (Right) τhalf for systems with increasing bulk/surface ratio as a function of surface binding strength. Increased bulk volume is depicted by black circles (1.25 × 105 nm3), red diamonds (3.75 × 105 nm3), and blue squares (7.5 × 105 nm3). The half times represent the time where 50% of the monomers have formed fibrils averaged over three independent simulation runs, and the error bars display the standard deviation.

    Figure 5

    Figure 5. Half times of fibrillar growth of peptide mutants at the repulsive (R) and at the weakly attractive (WA) surfaces. The mutation types are peptide–peptide attraction (top left), width of attractive patch (top, right), α → β transition barrier (bottom, left), and folding probability/friction (bottom, right).

    Figure 6

    Figure 6. Aggregation kinetics for 20 μM α-synuclein in 10 mM MES/NaOH pH 5.5 in the absence and presence of 23 nm polystyrene nanoparticles. (A) ThT fluorescence as a function of time with no (black), 0.06 g/L (blue), 0.12 g/L (green), or 0.25 g/L (red) nanoparticles. The first 110 h are shown. (B) Half time (average and standard deviation) for fibrillar growth as a function of nanoparticle concentration. The triangles indicate that no aggregation is observed over 215 h in samples with 0.03 g/L or less nanoparticles.

    Figure 7

    Figure 7. Aggregation kinetics for 6 μM Aβ42 in 20 mM sodium phosphate, 0.2 mM EDTA, pH 8.0 in the absence and presence of nanoparticles. (A and C) ThT fluorescence as a function of time with no (black), 0.002 (blue), 0.0044 (light blue), 0.01 (green), 0.022 (yellow), 0.05 (orange), or 0.11 (red) g/L polystyrene nanoparticles of 26 nm diameter with COOH-groups (A) or of 57 nm with NH2-groups (C). The first 2 and 1.2 h are shown, respectively. (B and D) Half times of fibrillar growth as a function of the concentration of nanoparticles (B: anionic, D: cationic) at low, 50, and 300 mM NaCl.

  • References

    ARTICLE SECTIONS
    Jump To

    This article references 50 other publications.

    1. 1
      Tang, F.; Li, L.; Chen, D. Adv. Mater. 2012, 24, 1504 1534
    2. 2
      Zahmakran, M.; Özkar, S. Nanoscale 2011, 3, 3462 3481
    3. 3
      Spyratou, E.; Makropoulou, M.; Mourelatou, E.; Demetzos, C. Cancer Letters 2012, 327, 111 122
    4. 4
      Linse, S.; Cabaleiro-Lago, C.; Xue, W.-F.; Lynch, I.; Lindman, S.; Thulin, E.; Radford, S. E.; Dawson, K. A. Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 8691 8696
    5. 5
      Lynch, I.; Dawson, K. A.; Linse, S. Sci. STKE 2006, 2006, pe14
    6. 6
      Rabe, M.; Soragni, A.; Reynolds, N. P.; Verdes, D.; Liverani, E.; Riek, R.; Seeger, S. ACS Chem. Neurosci. 2013, 4, 408 17
    7. 7
      Grey, M.; Linse, S.; Nilsson, H.; Brundin, P.; Sparr, E. J. Parkinsons Dis. 2011, 1, 359 371
    8. 8
      Pandey, A. P.; Haque, F.; Rochet, J.-C.; Hovis, J. S. Biophys. J. 2009, 96, 540 51
    9. 9
      Jo, E.; McLaurin, J.; Yip, C. M.; St. George-Hyslop, P.; Fraser, P. E. J. Biol. Chem. 2000, 275, 34328 34
    10. 10
      Butterfield, S. M.; Lashuel, H. a. Angew. Chem., Int. Ed. 2010, 49, 5628 54
    11. 11
      Relini, A.; Cavalleri, O.; Rolandi, R.; Gliozzi, A. Chem. Phys. Lipids 2009, 158, 1 9
    12. 12
      Giehm, L.; Lorenzen, N.; Otzen, D. E. Methods (San Diego, Calif.) 2011, 53, 295 305
    13. 13
      Pronchik, J.; He, X.; Giurleo, J. T.; Talaga, D. S. J. Am. Chem. Soc. 2010, 132, 9797 803
    14. 14
      Buell, A. K.; Galvagnion, C.; Gaspar, R.; Sparr, E.; Vendruscolo, M.; Knowles, T. P. J.; Linse, S.; Dobson, C. M. Proc. Natl. Acad. Sci. U.S.A. 2014,  DOI: 10.1073/pnas.1315346111
    15. 15
      Hellstrand, E.; Boland, B.; Walsh, D. M.; Linse, S. ACS Chem. Neurosci. 2010, 1, 13 18
    16. 16
      Cohen, S. I. A.; Linse, S.; Luheshi, L. M.; Hellstrand, E.; White, D. A.; Rajah, L.; Otzen, D. E.; Vendruscolo, M.; Dobson, C. M.; Knowles, T. P. J. Proc. Natl. Acad. Sci. U.S.A. 2013, 9758 9763
    17. 17
      Arosio, P.; Cukalevski, R.; Frohm, B.; Knowles, T. P. J.; Linse, S. J. Am. Chem. Soc. 2014, 136, 219 225
    18. 18
      Meisl, G.; Yang, X.; Hellstrand, E.; Frohm, B.; Kirkegaard, J. B.; Cohen, S. I. A.; Dobson, C. M.; Linse, S.; Knowles, T. P. J. Proc. Natl. Acad. Sci. U.S.A. 2014, 111, 9384 9389
    19. 19
      Cabaleiro-Lago, C.; Quinlan-Pluck, F.; Lynch, I.; Dawson, K. A.; Linse, S. ACS Chem. Neurosci. 2010, 1, 279 87
    20. 20
      Cabaleiro-Lago, C.; Szczepankiewicz, O.; Linse, S. Langmuir 2012, 28, 1852 1857
    21. 21
      Cabaleiro-Lago, C.; Quinlan-Pluck, F.; Lynch, I.; Lindman, S.; Minogue, A. M.; Thulin, E.; Walsh, D. M.; Dawson, K. A.; Linse, S. J. Am. Chem. Soc. 2008, 130, 15437 43
    22. 22
      Cabaleiro-Lago, C.; Lynch, I.; Dawson, K. A.; Linse, S. Langmuir 2010, 26, 3453 61
    23. 23
      Hellstrand, E.; Sparr, E.; Linse, S. Biophys. J. 2010, 98, 2206 14
    24. 24
      Booth, D. R.; Sunde, M.; Bellotti, V.; Robinson, C. V.; Hutchinson, W. L.; Fraser, P. E.; Hawkins, P. N.; Dobson, C. M.; Radford, S. E.; Blake, C. C.; Pepys, M. B. Nature 1997, 385, 787 93
    25. 25
      Szczepankiewicz, O.; Cabaleiro-Lago, C.; Tartaglia, G. G.; Vendruscolo, M.; Hunter, T.; Hunter, G. J.; Nilsson, H.; Thulin, E.; Linse, S. Mol. BioSyst. 2011, 7, 521 32
    26. 26
      Vácha, R.; Frenkel, D. Biophys. J. 2011, 101, 1432 1439
    27. 27
      Linse, B.; Linse, S. Mol. BioSyst. 2011, 7, 2296 2303
    28. 28
      Bieler, N. S.; Knowles, T. P. J.; Frenkel, D.; Vácha, R. PLoS Comput. Biol. 2012, 8, e1002692
    29. 29
      Kikuchi, K.; Yoshida, M.; Maekawa, T.; Watanabe, H. Chem. Phys. Lett. 1991, 185, 335 338
    30. 30
      Fichthorn, K. A.; Weinberg, W. H. J. Chem. Phys. 1991, 95, 1090 1096
    31. 31
      Sanz, E.; Marenduzzo, D. J. Chem. Phys. 2010, 132, 194102
    32. 32
      Jabbari-Farouji, S.; Trizac, E. J. Chem. Phys. 2012, 137, 054107
    33. 33
      Bora, R. P.; Prabhakar, R. J. Chem. Phys. 2009, 131, 155103
    34. 34
      Berthelot, D.; Van der Waals; Leduc, A. Comptes Rendus Hebdomadaires des Seances de l’Academie des Sciences 1898, 1703 1706
    35. 35
      Walsh, D. M.; Thulin, E.; Minogue, A. M.; Gustavsson, N.; Pang, E.; Teplow, D. B.; Linse, S. FEBS J. 2009, 276, 1266 81
    36. 36
      Zhai, J.; Lee, T.-H.; Small, D. H.; Aguilar, M.-I. Biochemistry 2012, 51, 1070 8
    37. 37
      Knight, J. D.; Miranker, A. D. J. Mol. Biol. 2004, 341, 1175 1187
    38. 38
      Friedman, R.; Pellarin, R.; Caflisch, A. J. Mol. Biol. 2009, 387, 407 415
    39. 39
      Volles, M. J.; Lee, S.-J.; Rochet, J.-C.; Shtilerman, M. D.; Ding, T. T.; Kessler, J. C.; Lansbury, P. T. Biochemistry 2001, 40, 7812 7819
    40. 40
      Sharp, J. S.; Forrest, J. A.; Jones, R. A. L. Biochemistry 2002, 41, 15810 15819
    41. 41
      Pellarin, R.; Caflisch, A. J. Mol. Biol. 2006, 360, 882 892
    42. 42
      Losic, D.; Martin, L. L.; Aguilar, M.-I.; Small, D. H. Biopolymers 2006, 84, 519 526
    43. 43
      Auer, S.; Trovato, A.; Vendruscolo, M. PLoS Comput. Biol. 2009, 5, e1000458
    44. 44
      Morriss-Andrews, A.; Bellesia, G.; Shea, J.-E. J. Chem. Phys. 2011, 135, 085102
    45. 45
      Morriss-Andrews, A.; Shea, J.-E. J. Chem. Phys. 2012, 136, 065103
    46. 46
      Yu, X.; Wang, Q.; Lin, Y.; Zhao, J.; Zhao, C.; Zheng, J. Langmuir 2012, 28, 6595 6605
    47. 47
      Wadhwani, P.; Strandberg, E.; Heidenreich, N.; Bürck, J.; Fanghänel, S.; Ulrich, A. S. J. Am. Chem. Soc. 2012, 134, 6512 6515
    48. 48
      Campioni, S.; Carret, G.; Jordens, S.; Nicoud, L.; Mezzenga, R.; Riek, R. J. Am. Chem. Soc. 2014, 136, 2866 2875
    49. 49
      Shen, L.; Adachi, T.; Vanden Bout, D.; Zhu, X.-Y. J. Am. Chem. Soc. 2012, 134, 14172 14178
    50. 50
      Losic, D.; Martin, L. L.; Aguilar, M.-I.; Small, D. H. Biopolymers 2006, 84, 519 26
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