logo
CONTENT TYPES

Figure 1Loading Img

Synthesis, Structures, and Electronic Properties of [8Fe-7S] Cluster Complexes Modeling the Nitrogenase P-Cluster

View Author Information
Department of Chemistry, Graduate School of Science and Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan, and Graduate School of Science and Engineering, Tokyo Metropolitan University, Minami-ohsawa, Hachioji, Tokyo 192-0397, Japan
†Nagoya University.
¶Kyoto University.
‡Tokyo Metropolitan University.
Cite this: J. Am. Chem. Soc. 2009, 131, 36, 13168–13178
Publication Date (Web):August 20, 2009
https://doi.org/10.1021/ja9055036
Copyright © 2009 American Chemical Society
Article Views
2664
Altmetric
-
Citations
LEARN ABOUT THESE METRICS

Article Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.

Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.

The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated.

Read OnlinePDF (2 MB)
Supporting Info (2)»

Abstract

Abstract Image

High-yield synthesis of the iron−sulfur cluster [{N(SiMe3)2}{SC(NMe2)2}Fe4S3]26-S) {μ-N(SiMe3)2}2 (1), which reproduces the [8Fe-7S] core structure of the nitrogenase PN-cluster, has been achieved via two pathways: (1) Fe{N(SiMe3)2}2 + HSTip (Tip = 2,4,6-iPr3C6H2) + tetramethylthiourea (SC(NMe2)2) + elemental sulfur (S8); and (2) Fe3{N(SiMe3)2}2(μ-STip)4 (2) + HSTip + SC(NMe2)2 + S8. The thiourea and terminal amide ligands of 1 were found to be replaceable by thiolate ligands upon treatment with thiolate anions and thiols at −40 °C, respectively, and a series of [8Fe-7S] clusters bearing two to four thiolate ligands have been synthesized and their structures were determined by X-ray analysis. The structures of these model [8Fe-7S] clusters all closely resemble that of the reduced form of P-cluster (PN) having 8Fe(II) centers, while their 6Fe(II)−2Fe(III) oxidation states correspond to the oxidized form of P-cluster (POX). The cyclic voltammograms of the [8Fe-7S] clusters reveal two quasi-reversible one-electron reduction processes, leading to the 8Fe(II) state that is the same as the PN-cluster, and the synthetic models demonstrate the redox behavior between the two major oxidation states of the native P-cluster. Replacement of the SC(NMe2)2 ligands in 1 with thiolate anions led to more negative reduction potentials, while a slight positive shift occurred upon replacement of the terminal amide ligands with thiolates. The clusters 1, (NEt4)2[{N(SiMe3)2}(SC6H4-4-Me)Fe4S3]26-S){μ-N(SiMe3)2}2 (3a), and [(SBtp){SC(NMe2)2}Fe4S3]26-S){μ-N(SiMe3)2}2 (5; Btp = 2,6-(SiMe3)2C6H3) are EPR silent at 4−100 K, and their temperature-dependent magnetic moments indicate a singlet ground state with antiferromagnetic couplings among the iron centers. The 57Fe Mössbauer spectra of these clusters are consistent with the 6Fe(II)−2Fe(III) oxidation state, each exhibiting two doublets with an intensity ratio of ca. 1:3, which are assignable to Fe(III) and Fe(II), respectively. Comparison of the quadrupole splittings for 1, 3a, and 5 has led to the conclusion that two Fe(III) sites of the clusters are the peripheral iron atoms.

Supporting Information

ARTICLE SECTIONS
Jump To

Details of X-ray crystallographic studies of 1, 3ae, 4, 5, 6, 7b, and (PPh4)2[Fe4S4(SPh)4] (PDF), and an X-ray crystallographic information file (CIF). This material is available free of charge via the Internet at http://pubs.acs.org.

Terms & Conditions

Most electronic Supporting Information files are available without a subscription to ACS Web Editions. Such files may be downloaded by article for research use (if there is a public use license linked to the relevant article, that license may permit other uses). Permission may be obtained from ACS for other uses through requests via the RightsLink permission system: http://pubs.acs.org/page/copyright/permissions.html.

Cited By


This article is cited by 49 publications.

  1. Kazuki Tanifuji, Yasuhiro Ohki. Metal–Sulfur Compounds in N2 Reduction and Nitrogenase-Related Chemistry. Chemical Reviews 2020, 120 (12) , 5194-5251. https://doi.org/10.1021/acs.chemrev.9b00544
  2. Casey Van Stappen, Laure Decamps, George E. Cutsail III, Ragnar Bjornsson, Justin T. Henthorn, James A. Birrell, Serena DeBeer. The Spectroscopy of Nitrogenases. Chemical Reviews 2020, 120 (12) , 5005-5081. https://doi.org/10.1021/acs.chemrev.9b00650
  3. Jia Yang, Pengfei Jiang, Zhengyang Zhou, Mufei Yue, Dingfeng Yang, Shijian Chen, Tao Yang. Regular Double-Cube [Cr7S8]5+ in [Cr7S8(SCN)4(NH3)14](HS): An Ideal Model Compound for Investigation of Geometrical Magnetic Frustration. Crystal Growth & Design 2019, 19 (11) , 6028-6032. https://doi.org/10.1021/acs.cgd.9b00984
  4. Daniël L. J. Broere, Ilija Čorić, Anna Brosnahan, and Patrick L. Holland . Quantitation of the THF Content in Fe[N(SiMe3)2]2·xTHF. Inorganic Chemistry 2017, 56 (6) , 3140-3143. https://doi.org/10.1021/acs.inorgchem.7b00056
  5. R. H. Holm and Wayne Lo . Structural Conversions of Synthetic and Protein-Bound Iron–Sulfur Clusters. Chemical Reviews 2016, 116 (22) , 13685-13713. https://doi.org/10.1021/acs.chemrev.6b00276
  6. John P. Shupp, Adam S. Kinne, Hadi D. Arman, and Zachary J. Tonzetich . Synthesis and Characterization of Molybdenum(0) and Tungsten(0) Complexes of Tetramethylthiourea: Single-Source Precursors for MoS2 and WS2. Organometallics 2014, 33 (19) , 5238-5245. https://doi.org/10.1021/om500567y
  7. Nobuhiro Taniyama, Yasuhiro Ohki, and Kazuyuki Tatsumi . Synthesis of V/Fe/S Clusters Using Vanadium(III) Thiolate Complexes Bearing a Phenoxide-Based Tridentate Ligand. Inorganic Chemistry 2014, 53 (11) , 5438-5446. https://doi.org/10.1021/ic4030603
  8. Kazuki Tanifuji, Norihiro Yamada, Tomoyuki Tajima, Takahiro Sasamori, Norihiro Tokitoh, Tsukasa Matsuo, Kohei Tamao, Yasuhiro Ohki, and Kazuyuki Tatsumi . A Convenient Route to Synthetic Analogues of the Oxidized Form of High-Potential Iron–Sulfur Proteins. Inorganic Chemistry 2014, 53 (8) , 4000-4009. https://doi.org/10.1021/ic402890k
  9. Sonny C. Lee, Wayne Lo, and R. H. Holm . Developments in the Biomimetic Chemistry of Cubane-Type and Higher Nuclearity Iron–Sulfur Clusters. Chemical Reviews 2014, 114 (7) , 3579-3600. https://doi.org/10.1021/cr4004067
  10. Xu-Dong Chen, Wei Zhang, Jeremiah S. Duncan, and Sonny C. Lee . Iron–Amide–Sulfide and Iron–Imide–Sulfide Clusters: Heteroligated Core Environments Relevant to the Nitrogenase FeMo Cofactor. Inorganic Chemistry 2012, 51 (23) , 12891-12904. https://doi.org/10.1021/ic301868m
  11. Shun Ohta, Yasuhiro Ohki, Takayoshi Hashimoto, Roger E. Cramer, and Kazuyuki Tatsumi . A Nitrogenase Cluster Model [Fe8S6O] with an Oxygen Unsymmetrically Bridging Two Proto-Fe4S3 Cubes: Relevancy to the Substrate Binding Mode of the FeMo Cofactor. Inorganic Chemistry 2012, 51 (21) , 11217-11219. https://doi.org/10.1021/ic301348f
  12. Philip P. Power . Stable Two-Coordinate, Open-Shell (d1–d9) Transition Metal Complexes. Chemical Reviews 2012, 112 (6) , 3482-3507. https://doi.org/10.1021/cr2004647
  13. Masahiro Yuki, Yoshihiro Miyake, and Yoshiaki Nishibayashi . Synthesis of Sulfur- and Nitrogen-Bridged Diiron Complexes and Catalytic Behavior toward Hydrazines. Organometallics 2012, 31 (8) , 2953-2956. https://doi.org/10.1021/om300134t
  14. Shun Ohta, Saori Yokozawa, Yasuhiro Ohki, and Kazuyuki Tatsumi . Oxido-Bridged Di-, Tri-, and Tetra-Nuclear Iron Complexes Bearing Bis(trimethylsilyl)amide and Thiolate Ligands. Inorganic Chemistry 2012, 51 (4) , 2645-2651. https://doi.org/10.1021/ic2025928
  15. Amit Majumdar and R. H. Holm . Specific Incorporation of Chalcogenide Bridge Atoms in Molybdenum/Tungsten-Iron-Sulfur Single Cubane Clusters. Inorganic Chemistry 2011, 50 (21) , 11242-11251. https://doi.org/10.1021/ic2018117
  16. Thomas Deschner, Karl W. Törnroos, and Reiner Anwander . Iron Silylamide-Grafted Periodic Mesoporous Silica. Inorganic Chemistry 2011, 50 (15) , 7217-7228. https://doi.org/10.1021/ic200788f
  17. Scott A. Sulway, David Collison, Joseph J. W. McDouall, Floriana Tuna, and Richard A. Layfield . Iron(II) Cage Complexes of N-Heterocyclic Amide and Bis(trimethylsilyl)amide Ligands: Synthesis, Structure, and Magnetic Properties. Inorganic Chemistry 2011, 50 (6) , 2521-2526. https://doi.org/10.1021/ic102341a
  18. (Associate Editor). The Interface of Inorganic Chemistry and Biology. Journal of the American Chemical Society 2010, 132 (42) , 14689-14693. https://doi.org/10.1021/ja108523h
  19. Christopher R. Sharp, Jeremiah S. Duncan and Sonny C. Lee. [Fe4S4]q Cubane Clusters (q = 4+, 3+, 2+) with Terminal Amide Ligands. Inorganic Chemistry 2010, 49 (14) , 6697-6705. https://doi.org/10.1021/ic100742c
  20. Takayoshi Hashimoto, Yasuhiro Ohki and Kazuyuki Tatsumi. Synthesis of Coordinatively Unsaturated Mesityliron Thiolate Complexes and Their Reactions with Elemental Sulfur. Inorganic Chemistry 2010, 49 (13) , 6102-6109. https://doi.org/10.1021/ic100692v
  21. Mayumi Sakamoto, Yasuhiro Ohki and Kazuyuki Tatsumi. Synthesis and Reactions of Coordinatively Unsaturated Half-Sandwich Rhodium and Iridium Complexes Having a 2,6-Dimesitylbenzenethiolate Ligand. Organometallics 2010, 29 (7) , 1761-1770. https://doi.org/10.1021/om100006r
  22. Shun Ohta. Nitrogenase: Metal Cluster Models. 2019,,, 1-13. https://doi.org/10.1002/9781119951438.eibc0148.pub2
  23. . Encyclopedia of Inorganic and Bioinorganic Chemistry. 2011,,https://doi.org/10.1002/9781119951438
  24. Yasuhiro Ohki, Keisuke Uchida, Mizuki Tada, Roger E. Cramer, Takashi Ogura, Takehiro Ohta. N2 activation on a molybdenum–titanium–sulfur cluster. Nature Communications 2018, 9 (1) https://doi.org/10.1038/s41467-018-05630-6
  25. Kazuki Tanifuji, Yasuhiro Ohki. Recent Advances in the Chemical Synthesis of Nitrogenase Model Clusters. 2018,,, 33-61. https://doi.org/10.1007/430_2018_26
  26. . Metallocofactors that Activate Small Molecules. 2019,,https://doi.org/10.1007/978-3-030-25897-9
  27. Shun Ohta, Yasuhiro Ohki. Impact of ligands and media on the structure and properties of biological and biomimetic iron-sulfur clusters. Coordination Chemistry Reviews 2017, 338 , 207-225. https://doi.org/10.1016/j.ccr.2017.02.018
  28. Piero Zanello. The competition between chemistry and biology in assembling iron–sulfur derivatives. Molecular structures and electrochemistry. Part V. {[Fe4S4](SCysγ)4} proteins. Coordination Chemistry Reviews 2017, 335 , 172-227. https://doi.org/10.1016/j.ccr.2016.10.003
  29. Kazuki Tanifuji, Nathaniel Sickerman, Chi Chung Lee, Takayuki Nagasawa, Kosuke Miyazaki, Yasuhiro Ohki, Kazuyuki Tatsumi, Yilin Hu, Markus W. Ribbe. Structure and Reactivity of an Asymmetric Synthetic Mimic of Nitrogenase Cofactor. Angewandte Chemie 2016, 128 (50) , 15862-15865. https://doi.org/10.1002/ange.201608806
  30. Kazuki Tanifuji, Nathaniel Sickerman, Chi Chung Lee, Takayuki Nagasawa, Kosuke Miyazaki, Yasuhiro Ohki, Kazuyuki Tatsumi, Yilin Hu, Markus W. Ribbe. Structure and Reactivity of an Asymmetric Synthetic Mimic of Nitrogenase Cofactor. Angewandte Chemie International Edition 2016, 55 (50) , 15633-15636. https://doi.org/10.1002/anie.201608806
  31. Frédéric Barrière. Model Complexes of the Active Site of Nitrogenases: Recent Advances. 2014,,, 225-248. https://doi.org/10.1002/9783527664160.ch9
  32. , . Bioinspired Catalysis. 2014,,https://doi.org/10.1002/9783527664160
  33. John S. Anderson, Jonas C. Peters. Low-Spin Pseudotetrahedral Iron(I) Sites in Fe 2 (μ-S) Complexes. Angewandte Chemie 2014, 126 (23) , 6088-6091. https://doi.org/10.1002/ange.201401018
  34. John S. Anderson, Jonas C. Peters. Low-Spin Pseudotetrahedral Iron(I) Sites in Fe 2 (μ-S) Complexes. Angewandte Chemie International Edition 2014, 53 (23) , 5978-5981. https://doi.org/10.1002/anie.201401018
  35. Yasuhiro Ohki. Synthetic Analogues of the Active Sites of Nitrogenase and [NiFe] Hydrogenase. Bulletin of the Chemical Society of Japan 2014, 87 (1) , 1-19. https://doi.org/10.1246/bcsj.20130207
  36. Deidra L. Gerlach, Dimitri Coucouvanis, Jeff Kampf, Nicolai Lehnert. Isolation and Characterization of Single and Sulfide-Bridged Double [4Fe-4S] Cubane Clusters with 4-Pyridinethiolato Ligands. European Journal of Inorganic Chemistry 2013, 2013 (30) , 5253-5264. https://doi.org/10.1002/ejic.201300802
  37. Tsubasa Hatanaka, Yasuhiro Ohki, Kazuyuki Tatsumi. Synthesis of Coordinatively Unsaturated Half-Sandwich Iron-Silyl Complexes with an N-Heterocyclic Carbene Ligand and Their Reactions with H 2. European Journal of Inorganic Chemistry 2013, 2013 (22-23) , 3966-3971. https://doi.org/10.1002/ejic.201300045
  38. Yilin Hu, Markus W. Ribbe. Nitrogenase assembly. Biochimica et Biophysica Acta (BBA) - Bioenergetics 2013, 1827 (8-9) , 1112-1122. https://doi.org/10.1016/j.bbabio.2012.12.001
  39. Yasuhiro Ohki, Kazuyuki Tatsumi. New Synthetic Routes to Metal-Sulfur Clusters Relevant to the Nitrogenase Metallo-Clusters. Zeitschrift für anorganische und allgemeine Chemie 2013, 639 (8-9) , 1340-1349. https://doi.org/10.1002/zaac.201300081
  40. Yasuhiro Ohki, Kazuki Tanifuji, Norihiro Yamada, Roger E. Cramer, Kazuyuki Tatsumi. Formation of a Nitrogenase P-cluster [Fe 8 S 7 ] Core via Reductive Fusion of Two All-Ferric [Fe 4 S 4 ] Clusters. Chemistry - An Asian Journal 2012, 7 (10) , 2222-2224. https://doi.org/10.1002/asia.201200568
  41. Tamaki Terada, Takuya Wakimoto, Tomohiko Nakamura, Kiyohisa Hirabayashi, Kaho Tanaka, Jichun Li, Tsuyoshi Matsumoto, Kazuyuki Tatsumi. Tridentate Thiolate Ligands: Application to the Synthesis of the Site-Differentiated [4Fe-4S] Cluster having a Hydrosulfide Ligand at the Unique Iron Center. Chemistry - An Asian Journal 2012, 7 (5) , 920-929. https://doi.org/10.1002/asia.201200039
  42. Wenwen Yao, Prabhuodeyara M. Gurubasavaraj, Patrick L. Holland. All-Ferrous Iron–Sulfur Clusters. 2012,,, 1-37. https://doi.org/10.1007/430_2012_81
  43. . Molecular Design in Inorganic Biochemistry. 2014,,https://doi.org/10.1007/978-3-662-43599-1
  44. Y. Hu, M. W. Ribbe. Biosynthesis of the Metalloclusters of Molybdenum Nitrogenase. Microbiology and Molecular Biology Reviews 2011, 75 (4) , 664-677. https://doi.org/10.1128/MMBR.05008-11
  45. Y. Ohki, K. Tanifuji, N. Yamada, M. Imada, T. Tajima, K. Tatsumi. Synthetic analogues of [Fe4S4(Cys)3(His)] in hydrogenases and [Fe4S4(Cys)4] in HiPIP derived from all-ferric [Fe4S4 4]. Proceedings of the National Academy of Sciences 2011, 108 (31) , 12635-12640. https://doi.org/10.1073/pnas.1106472108
  46. Yilin Hu, Markus W. Ribbe. Biosynthesis of nitrogenase FeMoco. Coordination Chemistry Reviews 2011, 255 (9-10) , 1218-1224. https://doi.org/10.1016/j.ccr.2010.11.018
  47. Yohei Sano, Akira Onoda, Rie Sakurai, Hiroaki Kitagishi, Takashi Hayashi. Preparation and reactivity of a tetranuclear Fe(II) core in the metallothionein α-domain. Journal of Inorganic Biochemistry 2011, 105 (5) , 702-708. https://doi.org/10.1016/j.jinorgbio.2011.01.011
  48. Steffen Meyer, Serhiy Demeshko, Sebastian Dechert, Franc Meyer. Synthesis, structure and Mössbauer characterization of polymeric iron(II) complexes with bidentate thiourea ligands. Inorganica Chimica Acta 2010, 363 (12) , 3088-3092. https://doi.org/10.1016/j.ica.2010.04.015
  49. Tsubasa Hatanaka, Yasuhiro Ohki, Kazuyuki Tatsumi. CH Bond Activation/Borylation of Furans and Thiophenes Catalyzed by a Half-Sandwich Iron N-Heterocyclic Carbene Complex. Chemistry - An Asian Journal 2010, 5 (7) , 1657-1666. https://doi.org/10.1002/asia.201000140

Pair your accounts.

Export articles to Mendeley

Get article recommendations from ACS based on references in your Mendeley library.

Pair your accounts.

Export articles to Mendeley

Get article recommendations from ACS based on references in your Mendeley library.

You’ve supercharged your research process with ACS and Mendeley!

STEP 1:
Click to create an ACS ID

Please note: If you switch to a different device, you may be asked to login again with only your ACS ID.

Please note: If you switch to a different device, you may be asked to login again with only your ACS ID.

Please note: If you switch to a different device, you may be asked to login again with only your ACS ID.

OOPS

You have to login with your ACS ID befor you can login with your Mendeley account.

MENDELEY PAIRING EXPIRED
Your Mendeley pairing has expired. Please reconnect

This website uses cookies to improve your user experience. By continuing to use the site, you are accepting our use of cookies. Read the ACS privacy policy.

CONTINUE