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Measurement of Electric Fields Experienced by Urea Guest Molecules in the 18-Crown-6/Urea (1:5) Host–Guest Complex: An Experimental Reference Point for Electric-Field-Assisted Catalysis

  • Ming W. Shi
    Ming W. Shi
    School of Molecular Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
    More by Ming W. Shi
  • Sajesh P. Thomas
    Sajesh P. Thomas
    School of Molecular Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
    Center for Materials Crystallography and Department of Chemistry, Aarhus University, Langelandsgade 140, DK-8000 Aarhus C, Denmark
  • Venkatesha R. Hathwar
    Venkatesha R. Hathwar
    Center for Materials Crystallography and Department of Chemistry, Aarhus University, Langelandsgade 140, DK-8000 Aarhus C, Denmark
    Division of Physics, Faculty of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
  • Alison J. Edwards
    Alison J. Edwards
    Australian Nuclear Science and Technology Organization, Australian Centre for Neutron Scattering, New Illawarra Road, Lucas Heights, New South Wales 2234, Australia
  • Ross O. Piltz
    Ross O. Piltz
    Australian Nuclear Science and Technology Organization, Australian Centre for Neutron Scattering, New Illawarra Road, Lucas Heights, New South Wales 2234, Australia
  • Dylan Jayatilaka
    Dylan Jayatilaka
    School of Molecular Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
  • George A. Koutsantonis
    George A. Koutsantonis
    School of Molecular Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
  • Jacob Overgaard
    Jacob Overgaard
    Center for Materials Crystallography and Department of Chemistry, Aarhus University, Langelandsgade 140, DK-8000 Aarhus C, Denmark
  • Eiji Nishibori
    Eiji Nishibori
    Division of Physics, Faculty of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
  • Bo B. Iversen
    Bo B. Iversen
    Center for Materials Crystallography and Department of Chemistry, Aarhus University, Langelandsgade 140, DK-8000 Aarhus C, Denmark
  • , and 
  • Mark A. Spackman*
    Mark A. Spackman
    School of Molecular Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
    *[email protected]
Cite this: J. Am. Chem. Soc. 2019, 141, 9, 3965–3976
Publication Date (Web):February 14, 2019
https://doi.org/10.1021/jacs.8b12927
Copyright © 2019 American Chemical Society
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Supporting Info (2)»

Abstract

Abstract Image

High-resolution synchrotron and neutron single-crystal diffraction data of 18-crown-6/(pentakis)urea measured at 30 K are combined, with the aim of better appreciating the electrostatics associated with intermolecular interactions in condensed matter. With two 18-crown-6 molecules and five different urea molecules in the crystal, this represents the most ambitious combined X-ray/synchrotron and neutron experimental charge density analysis to date on a cocrystal or host–guest system incorporating such a large number of unique molecules. The dipole moments of the five urea guest molecules in the crystal are enhanced considerably compared to values determined for isolated molecules, and 2D maps of the electrostatic potential and electric field show clearly how the urea molecules are oriented with dipole moments aligned along the electric field exerted by their molecular neighbors. Experimental electric fields in the range of 10–19 GV m–1, obtained for the five different urea environments, corroborate independent measurements of electric fields in the active sites of enzymes and provide an important experimental reference point for recent discussions focused on electric-field-assisted catalysis.

Supporting Information

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The Supporting Information is available free of charge on the ACS Publications website at DOI: 10.1021/jacs.8b12927.

  • Crystallographic and refinement details; normal probability and fractal dimension plots; residual electron density maps; static deformation density maps; discussions of the relationship between 18C6:5U and urea inclusion compounds and the conformation of the crown molecules and the pyramidalization of the urea nitrogens; CE-B3LYP energy decomposition for unique nearest-neighbor interactions; topological properties at bond critical points for the covalent bonds and noncovalent interactions; and scatter plots of electron density and its Laplacian at bcp’s for covalent bonds and noncovalent interactions (PDF)

  • Crystallographic data for single crystal neutron and synchrotron diffraction experiments of 18C6:5U at 30 K, and refinement parameters for the MM-NEUTRON multipole model (CIF)

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