How Axial Coordination Regulates the Electronic Structure and C–H Amination Reactivity of Fe–Porphyrin–Nitrene?Click to copy article linkArticle link copied!
- Mayank MahajanMayank MahajanSchool of Chemical Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh 175075, IndiaMore by Mayank Mahajan
- Bhaskar Mondal*Bhaskar Mondal*Email: [email protected]School of Chemical Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh 175075, IndiaMore by Bhaskar Mondal
Abstract
Detailed electronic structure and its correlation with the intramolecular C–H amination reactivity of Fe–porphyrin–nitrene intermediates bearing different “axial” coordination have been investigated using multiconfigurational complete active space self-consistent field (CASSCF), N-electron valence perturbation theory (NEVPT2), and hybrid density functional theory (DFT-B3LYP) calculations. Three types of “axial” coordination, −OMe/–O(H)Me (1-Sul/2-Sul), −SMe/–S(H)Me (3-Sul/4-Sul), and −NMeIm (MeIm = 3-methyl-imidazole) (5-Sul) mimicking serine, cysteine, and histidine, respectively, along with no axial coordination (6-Sul) have been considered to decipher how the “axial” coordination of different strengths regulates the electronic integrity of the Fe–N core and nitrene-transfer reactivity of Fe–porphyrin–nitrene intermediates. CASSCF-based natural orbitals reveal two distinct classes of electronic structures: Fe-nitrenes (1-Sul and 3-Sul) with relatively stronger axial coordination (−OMe and −SMe) display “imidyl” nature and those (2-Sul, 4-Sul, and 6-Sul) with weaker axial coordination (−O(H)Me, −S(H)Me and no axial coordination) exhibit “imido-like” character. A borderline between the two classes is also observed with NMeIm axial coordination (5-Sul). Axial coordination of different strengths not only regulates the electronic structure but also modulates the Fe-3d orbital energies, as revealed through the d–d transition energies obtained by CASSCF/NEVPT2 calculations. The relatively lower energy of Fe-3dz2 orbital allows easy access to low-lying high-spin quintet states in the cases of weaker “axial” coordination (2-Sul, 4-Sul, and 6-Sul), and the associated hydrogen atom transfer (HAT) reactivity appears to involve two-state triplet-quintet reactivity through minimum energy crossing point (3,5MECP) between the spin states. In stark contrast, Fe-nitrenes with relatively stronger “axial” coordination (1-Sul and 3-Sul) undergo triplet-only HAT reactivity. Overall, this in-depth electronic structure investigation and HAT reactivity evaluation reveal that the weaker axial coordination in Fe–porphyrin–nitrene complexes (2-Sul, 4-Sul, and 6-Sul) can promote more efficient C–H oxidation through the quintet spin state.
This publication is licensed under
License Summary*
You are free to share(copy and redistribute) this article in any medium or format within the parameters below:
Creative Commons (CC): This is a Creative Commons license.
Attribution (BY): Credit must be given to the creator.
Non-Commercial (NC): Only non-commercial uses of the work are permitted.
No Derivatives (ND): Derivative works may be created for non-commercial purposes, but sharing is prohibited.
*Disclaimer
This summary highlights only some of the key features and terms of the actual license. It is not a license and has no legal value. Carefully review the actual license before using these materials.
License Summary*
You are free to share(copy and redistribute) this article in any medium or format within the parameters below:
Creative Commons (CC): This is a Creative Commons license.
Attribution (BY): Credit must be given to the creator.
Non-Commercial (NC): Only non-commercial uses of the work are permitted.
No Derivatives (ND): Derivative works may be created for non-commercial purposes, but sharing is prohibited.
*Disclaimer
This summary highlights only some of the key features and terms of the actual license. It is not a license and has no legal value. Carefully review the actual license before using these materials.
License Summary*
You are free to share(copy and redistribute) this article in any medium or format within the parameters below:
Creative Commons (CC): This is a Creative Commons license.
Attribution (BY): Credit must be given to the creator.
Non-Commercial (NC): Only non-commercial uses of the work are permitted.
No Derivatives (ND): Derivative works may be created for non-commercial purposes, but sharing is prohibited.
*Disclaimer
This summary highlights only some of the key features and terms of the actual license. It is not a license and has no legal value. Carefully review the actual license before using these materials.
License Summary*
You are free to share(copy and redistribute) this article in any medium or format within the parameters below:
Creative Commons (CC): This is a Creative Commons license.
Attribution (BY): Credit must be given to the creator.
Non-Commercial (NC): Only non-commercial uses of the work are permitted.
No Derivatives (ND): Derivative works may be created for non-commercial purposes, but sharing is prohibited.
*Disclaimer
This summary highlights only some of the key features and terms of the actual license. It is not a license and has no legal value. Carefully review the actual license before using these materials.
License Summary*
You are free to share(copy and redistribute) this article in any medium or format within the parameters below:
Creative Commons (CC): This is a Creative Commons license.
Attribution (BY): Credit must be given to the creator.
Non-Commercial (NC): Only non-commercial uses of the work are permitted.
No Derivatives (ND): Derivative works may be created for non-commercial purposes, but sharing is prohibited.
*Disclaimer
This summary highlights only some of the key features and terms of the actual license. It is not a license and has no legal value. Carefully review the actual license before using these materials.
Introduction
Scheme 1
aTop panel: nitrene transfer reactions catalyzed by cytochrome- and myoglobin-based enzymes. Bottom panel: active sites of Cyt-P450, Cyt-P411, Cyt-c, and myoglobin (Mb) enzymes with “axial” O–Ser, S–Cys, and N–His coordination, respectively.
Scheme 2
Computational Methods
Results and Discussion
Electronic Structure of Fe-Porphyrin-Nitrene Derived from Complexes 1 and 2
Figure 1
Figure 1. Electronic structure of Fe-porphyrin-nitrene derived from 1 (1-Sul, left) and 2 (2-Sul, right) showcasing natural orbitals, occupation numbers in parentheses, atomic orbital contributions, dominant electronic configuration, spin density, and spin population derived from the CASSCF(10,13)/def2-TZVPP level of theory. The orbitals are schematically arranged based on their occupation numbers, and the metal 4d orbitals are omitted for clarity. The chemical structures of 1-Sul and 2-Sul are presented with the Fe–N bond distance in Å.
Electronic Structure Evolution with “Axial” Coordination
Figure 2
Figure 2. Evolution of the Fe–N π electronic structure with the “axial” Fe–O distance in 1-Sul obtained at the CASSCF(10,13)/NEVPT2 level of theory.
Electronic Structure in Different “Axial” Coordination Environments
Figure 3
Figure 3. Key orbitals describing the Fe–N π-interaction in Fe-porphyrin-nitrene species derived from complexes 1–6 and sulfamoyl azide, 1-Sul, 2-Sul, 3-Sul, 4-Sul, 5-Sul, and 6-Sul. Left panel: chemical structure and Fe–N distance in Å. Middle panel: key π-natural orbitals along with the atomic contributions from Fe and N. Right panel: spin density and spin population obtained at the CASSCF(10,13) level of theory.
Nitrene-Transfer Reactivity
Figure 4
Figure 4. Reaction free energy (ΔG) profile for the hydrogen atom transfer (HAT) reaction exhibited by 1-Sul (a) and 2-Sul (b) in three different spin states. Results were obtained at the DFT-B3LYP/def2-TZVP/SMD (chlorobenzene) level of theory.
Figure 5
Figure 5. Triplet vs quintet hydrogen atom transfer (HAT) free energy profiles for 1-Sul, 2-Sul, 3-Sul, 4-Sul, and 6-Sul. The red circles represent the calculated minimum energy crossing point (MECP) position between triplet and quintet spin states. Results were obtained at the DFT-B3LYP/def2-TZVP/SMD (chlorobenzene) level of theory.
Effect of “Axial” Coordination on Orbital Energies
Figure 6
Figure 6. d–d transition energies obtained at the CASSCF(10,13)/NEVPT2 level of theory and schematic orbital-splitting diagram for species 1-Sul, 2-Sul, 3-Sul, 4-Sul, and 6-Sul.
Concluding Remarks and Outlook
Supporting Information
The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/jacsau.3c00670.
Structure evaluation at different DFT methods; full electronic structures at the CASSCF level; electronic structure evolution studies; MECP geometries, HAT reactivity, and d–d transition energies; and optimized Cartesian coordinates for all the species involved (PDF)
Terms & Conditions
Most electronic Supporting Information files are available without a subscription to ACS Web Editions. Such files may be downloaded by article for research use (if there is a public use license linked to the relevant article, that license may permit other uses). Permission may be obtained from ACS for other uses through requests via the RightsLink permission system: http://pubs.acs.org/page/copyright/permissions.html.
Acknowledgments
The authors are grateful for the funding support from the Science and Engineering Research Board (SERB) in the form of a Start-Up Research Grant (SRG/2020/000691) and a Seed Grant from IIT Mandi (IITM/SG/ABP/76). M.M. thanks the Ministry of Education (MoE) for the research fellowship. The High-Performance Computing (HPC) facility at IIT Mandi and PARAM Himalaya computing facility is acknowledged for providing high-end computational resources. The authors are further thankful to the reviewers for their constructive comments and suggestions.
References
This article references 53 other publications.
- 1Dunham, N. P.; Arnold, F. H. Nature’s Machinery, Repurposed: Expanding the Repertoire of Iron-Dependent Oxygenases. ACS Catal. 2020, 10, 12239– 12255, DOI: 10.1021/acscatal.0c03606Google Scholar1https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXhvFaqs7fL&md5=007b291f3cab1ae5ddce677e44d64861Nature's machinery, repurposed: Expanding the repertoire of iron-dependent oxygenasesDunham, Noah P.; Arnold, Frances H.ACS Catalysis (2020), 10 (20), 12239-12255CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)A review. Iron is an esp. important redox-active cofactor in biol. because of its ability to mediate reactions with atm. O2. Iron-dependent oxygenases exploit this earth-abundant transition metal for the insertion of oxygen atoms into org. compds. Throughout the astounding diversity of transformations catalyzed by these enzymes, the protein framework directs reactive intermediates toward the precise formation of products, which, in many cases, necessitates the cleavage of strong C-H bonds. In recent years, members of several iron-dependent oxygenase families have been engineered for new-to-nature transformations that offer advantages over conventional synthetic methods. In this Perspective, we first explore what is known about the reactivity of heme-dependent cytochrome P 450 oxygenases and nonheme iron-dependent oxygenases bearing the 2-His-1-carboxylate facial triad by reviewing mechanistic studies with an emphasis on how the protein scaffold maximizes the catalytic potential of the iron-heme and iron cofactors. We then review how these cofactors have been repurposed for abiol. transformations by engineering the protein frameworks of these enzymes. Finally, we discuss contemporary challenges assocd. with engineering these platforms and comment on their roles in biocatalysis moving forward.
- 2Yang, Y.; Arnold, F. H. Navigating the Unnatural Reaction Space: Directed Evolution of Heme Proteins for Selective Carbene and Nitrene Transfer. Acc. Chem. Res. 2021, 54, 1209– 1225, DOI: 10.1021/acs.accounts.0c00591Google Scholar2https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3MXhvVWls78%253D&md5=9b6091b0a3ff069ea4bf61137ab123a4Navigating the Unnatural Reaction Space: Directed Evolution of Heme Proteins for Selective Carbene and Nitrene TransferYang, Yang; Arnold, Frances H.Accounts of Chemical Research (2021), 54 (5), 1209-1225CODEN: ACHRE4; ISSN:0001-4842. (American Chemical Society)A review. Conspectus: Despite the astonishing diversity of naturally occurring biocatalytic processes, enzymes do not catalyze many of the transformations favored by synthetic chemists. Either nature does not care about the specific products, or if she does, she has adopted a different synthetic strategy. In many cases, the appropriate reagents used by synthetic chemists are not readily accessible to biol. systems. Here, the authors' efforts to expand the catalytic repertoire of enzymes to encompass powerful reactions previously known only in small-mol. catalysis: formation and transfer of reactive carbene and nitrene intermediates leading to a broad range of products, including products with bonds not known in biol. are discussed. In light of the structural similarity of iron carbene (Fe:C(R1)(R2)) and iron nitrene (Fe = NR) to the iron oxo (Fe = O) intermediate involved in cytochrome P 450-catalyzed oxidn., the authors used synthetic carbene and nitrene precursors that biol. systems have not encountered and repurposed P450s to catalyze reactions that are not known in the natural world. The resulting protein catalysts are fully genetically encoded and function in intact microbial cells or cell-free lysates, where their performance can be improved and optimized by directed evolution. By leveraging the catalytic promiscuity of P 450 enzymes, the authors evolved a range of carbene and nitrene transferases exhibiting excellent activity toward these new-to-nature reactions. Since the authors' initial report in 2012, a no. of other heme proteins including myoglobins, protoglobins, and cytochromes c also were found and engineered to promote unnatural carbene and nitrene transfer. Due to the altered active-site environments, these heme proteins often displayed complementary activities and selectivities to P450s. Using wild-type and engineered heme proteins, the authors and others have described a range of selective carbene transfer reactions, including cyclopropanation, cyclopropenation, Si-H insertion, B-H insertion, and C-H insertion. Similarly, a variety of asym. nitrene transfer processes including aziridination, sulfide imidation, C-H amidation, and, most recently, C-H amination were demonstrated. The scopes of these biocatalytic carbene and nitrene transfer reactions are often complementary to the state-of-the-art processes based on small-mol. transition-metal catalysts, making engineered biocatalysts a valuable addn. to the synthetic chemist's toolbox. Moreover, enabled by the exquisite regio- and stereocontrol imposed by the enzyme catalyst, this biocatalytic platform provides an exciting opportunity to address challenging problems in modern synthetic chem. and selective catalysis, including ones that have eluded synthetic chemists for decades.
- 3Chen, K.; Arnold, F. H. Engineering New Catalytic Activities in Enzymes. Nat. Catal. 2020, 3, 203– 213, DOI: 10.1038/s41929-019-0385-5Google Scholar3https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXjtFylsL4%253D&md5=650897e5fffbe806cb8358ef4c725313Engineering new catalytic activities in enzymesChen, Kai; Arnold, Frances H.Nature Catalysis (2020), 3 (3), 203-213CODEN: NCAACP; ISSN:2520-1158. (Nature Research)A review. Abstr.: The efficiency, selectivity and sustainability benefits offered by enzymes are enticing chemists to consider biocatalytic transformations to complement or even supplant more traditional synthetic routes. Increasing demands for efficient and versatile synthetic methods, combined with powerful new discovery and engineering tools, has prompted innovations in biocatalysis, esp. the development of new enzymes for precise transformations or 'mol. editing'. As a result, the past decade has witnessed an impressive expansion of the catalytic repertoire of enzymes to include new and useful transformations not known (or relevant) in the biol. world. In this Review we illustrate various ways in which researchers have approached using the catalytic machineries of enzymes for new-to-nature transformations. These efforts have identified genetically encoded catalysts that can be tuned and diversified by engineering the protein sequence, particularly by directed evolution. Discovery and improvement of these new enzyme activities is opening a floodgate that connects the chem. of the biol. world to that invented by humans over the past 100 years.
- 4Singh, R.; Mukherjee, A. Metalloporphyrin Catalyzed C-H Amination. ACS Catal. 2019, 9, 3604– 3617, DOI: 10.1021/acscatal.9b00009Google Scholar4https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC1MXkvVyntLo%253D&md5=6787a6e495bcc2b2326516b667792d6fMetalloporphyrin Catalyzed C-H AminationSingh, Ritesh; Mukherjee, AnirbanACS Catalysis (2019), 9 (4), 3604-3617CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)A review discusses the use of metalloporphyrins in org. synthesis for the amination, azidation, and imination of C-H bonds to yield amines, azides, and imines; the use of metalloporphyrin-contg. enzymes for regioselective or enantioselective amination reactions and the mechanisms of selected reactions are also discussed.
- 5Hyster, T. K.; Farwell, C. C.; Buller, A. R.; McIntosh, J. A.; Arnold, F. H. Enzyme-Controlled Nitrogen-Atom Transfer Enables Regiodivergent C-H Amination. J. Am. Chem. Soc. 2014, 136, 15505– 15508, DOI: 10.1021/ja509308vGoogle Scholar5https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2cXhslOhu7vL&md5=64df2e3d111a1d0baeddb8248e056a55Enzyme-Controlled Nitrogen-Atom Transfer Enables Regiodivergent C-H AminationHyster, Todd K.; Farwell, Christopher C.; Buller, Andrew R.; McIntosh, John A.; Arnold, Frances H.Journal of the American Chemical Society (2014), 136 (44), 15505-15508CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)We recently demonstrated that variants of cytochrome P 450BM3 (CYP102A1) catalyze the insertion of nitrogen species into benzylic C-H bonds to form new C-N bonds. An outstanding challenge in the field of C-H amination is catalyst-controlled regioselectivity. Here, we report two engineered variants of P 450BM3 that provide divergent regioselectivity for C-H amination - one favoring amination of benzylic C-H bonds and the other favoring homo-benzylic C-H bonds. The two variants provide nearly identical kinetic isotope effect values (2.8-3.0), suggesting that C-H abstraction is rate-limiting. The 2.66-Å crystal structure of the most active enzyme suggests that the engineered active site can preorganize the substrate for reactivity. We hypothesize that the enzyme controls regioselectivity through localization of a single C-H bond close to the iron nitrenoid.
- 6Singh, R.; Bordeaux, M.; Fasan, R. P450-Catalyzed Intramolecular Sp3 C–H Amination with Arylsulfonyl Azide Substrates. ACS Catal. 2014, 4, 546– 552, DOI: 10.1021/cs400893nGoogle Scholar6https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2cXjtFantg%253D%253D&md5=1bac46ddee013c69af256110e433f98bP450-Catalyzed Intramolecular sp3 C-H Amination with Arylsulfonyl Azide SubstratesSingh, Ritesh; Bordeaux, Melanie; Fasan, RudiACS Catalysis (2014), 4 (2), 546-552CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)The direct amination of aliph. C-H bonds represents a most valuable transformation in org. chem. While a no. of transition-metal-based catalysts have been developed and investigated for this purpose, the possibility to execute this transformation with biol. catalysts has remained largely unexplored. Here, we report that cytochrome P 450 enzymes can serve as efficient catalysts for mediating intramol. benzylic C-H amination reactions in a variety of arylsulfonyl azide compds. Under optimized conditions, the P 450 catalysts were found to support up to 390 total turnovers leading to the formation of the desired sultam products with excellent regioselectivity. In addn., the chiral environment provided by the enzyme active site allowed for the reaction to proceed in a stereo- and enantioselective manner. The C-H amination activity, substrate profile, and enantio/stereoselectivity of these catalysts could be modulated by utilizing enzyme variants with engineered active sites.
- 7Steck, V.; Kolev, J. N.; Ren, X.; Fasan, R. Mechanism-Guided Design and Discovery of Efficient Cytochrome P450-Derived C-H Amination Biocatalysts. J. Am. Chem. Soc. 2020, 142, 10343– 10357, DOI: 10.1021/jacs.9b12859Google Scholar7https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXpsVCqsrk%253D&md5=718c44b96ae5e592ed49eecf0ee4f538Mechanism-Guided Design and Discovery of Efficient Cytochrome P450-Derived C-H Amination BiocatalystsSteck, Viktoria; Kolev, Joshua N.; Ren, Xinkun; Fasan, RudiJournal of the American Chemical Society (2020), 142 (23), 10343-10357CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)Cytochromes P 450 have been recently identified as a promising class of biocatalysts for mediating C-H aminations via nitrene transfer, a valuable transformation for forging new C-N bonds. The catalytic efficiency of P450s in these non-native transformations is however significantly inferior to that exhibited by these enzymes in their native monooxygenase function. Using a mechanism-guided strategy, we report here the rational design of a series of P 450BM3-based variants with dramatically enhanced C-H amination activity acquired through disruption of the native proton relay network and other highly conserved structural elements within this class of enzymes. This approach further guided the identification of XplA and BezE, two "atypical" natural P450s implicated in the degrdn. of a man-made explosive and in benzastatins biosynthesis, resp., as very efficient C-H aminases. Both XplA and BezE could be engineered to further improve their C-H amination reactivity, which demonstrates their evolvability for abiol. reactions. These engineered and natural P 450 catalysts can promote the intramol. C-H amination of arylsulfonyl azides with over 10 000-14 000 catalytic turnovers, ranking among the most efficient nitrene transfer biocatalysts reported to date. Mechanistic and structure-reactivity studies provide insights into the origin of the C-H amination reactivity enhancement and highlight the divergent structural requirements inherent to supporting C-H amination vs. C-H monooxygenation reactivity within this class of enzymes. Overall, this work provides new promising scaffolds for the development of nitrene transferases and demonstrates the value of mechanism-driven rational design as a strategy for improving the catalytic efficiency of metalloenzymes in the context of abiol. transformations.
- 8Conradie, J.; Ghosh, A. Electronic Structure of an Iron-Porphyrin–Nitrene Complex. Inorg. Chem. 2010, 49, 243– 248, DOI: 10.1021/ic901897wGoogle Scholar8https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD1MXhsFaks7vL&md5=05a4c04b0d6aae0ad42388b6b7747e45Electronic Structure of an Iron-Porphyrin-Nitrene ComplexConradie, Jeanet; Ghosh, AbhikInorganic Chemistry (2010), 49 (1), 243-248CODEN: INOCAJ; ISSN:0020-1669. (American Chemical Society)Middle and late transition metal imido complexes (which may also be viewed as metal-nitrene adducts) are rather rare, esp. for square-pyramidal and octahedral coordination geometries. However, an iron(II) porphyrin aminonitrene adduct, denoted here as Fe(Por)(NN), has been known for almost a quarter of a century. Unlike the corresponding S = 1 oxene and S = 0 carbene adducts, Fe(Por)(NN) exhibits an S = 2 ground state. DFT-GGA calcns. reported herein provide a MO description of this unusual species as well as a rationale for its S = 2 ground state. The electronic configuration of Fe(Por)(NN) may be described as dπ2dxy1dz21dx2-y21dπ'1, where the z direction corresponds to the Fe-NN axis. The stability and double occupancy of one of the dπ orbitals may be attributed to a π-backbonding interaction with the N-N π* orbital. The weak σ-donor ability of the aminonitrene ligand results in a relatively low-energy dz2 orbital and an overall d orbital splitting pattern that engenders a high-spin ground state.
- 9Li, X.; Dong, L.; Liu, Y. Theoretical Study of Iron Porphyrin Nitrene: Formation Mechanism, Electronic Nature, and Intermolecular C-H Amination. Inorg. Chem. 2020, 59, 1622– 1632, DOI: 10.1021/acs.inorgchem.9b02216Google Scholar9https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXmtlehtQ%253D%253D&md5=e1a345a397cbf79cf3cb36acab0abdc9Theoretical Study of Iron Porphyrin Nitrene: Formation Mechanism, Electronic Nature, and Intermolecular C-H AminationLi, Xinyi; Dong, Lihua; Liu, YongjunInorganic Chemistry (2020), 59 (3), 1622-1632CODEN: INOCAJ; ISSN:0020-1669. (American Chemical Society)The formation mechanism and electronic structures of iron porphyrin nitrene intermediates, as well as the nitrene-mediated intermol. C-H amination have been studied by performing DFT and ab initio complete active space SCF (CASSCF) calcns. Compared with that of cobalt porphyrin nitrene and iron porphyrin carbene, the formation of iron porphyrin nitrene shows similar but different characteristics. The common feature is that all their formation requires to undergo the "far" or "close" complexes, but these complexes correspond to different energies relative to their resp. reactants (isolated metalloporphyrins and azides), which is considered as one main reason to det. the reaction barriers. The overall free energy barrier for the formation of iron porphyrin nitrene was calcd. to be 10.6 kcal/mol on triplet state surface, which is lower than those of cobalt porphyrin nitrene and iron porphyrin carbene. The departure of N2 from the "close complexes" formed by iron porphyrin and tosyl azide is nearly barrierless. For iron porphyrin nitrene, both CASSCF and unrestricted DFT calcns. revealed that the triplet and open-shell singlet complexes correspond to very similar energies, and the triplet nitrene complex can be described as [(por)(-OCH3)FeII = NTs]- ↔ [(por)(-OCH3)FeIII = N•-Ts]- ↔ [(por)(-OCH3)FeIV = N2-Ts]-. While the oss nitrene complex can be described as [(por)(-OCH3)FeIII-N•-Ts]-. Since the N atom bears similar spin d. as in cobalt porphyrin nitrene, the iron porphyrin nitrene exhibits similar activity in hydrogen abstraction. In addn., the intermol. C-H amination catalyzed by iron porphyrin nitrene follows the hydrogen atom abstraction/radical recombination mechanism with a free energy barrier of 7.1 kcal/mol on the triplet state surface. In general, the medium reactivity and easily prepd. characteristic of iron porphyrin nitrene make it a potential catalyst for C-H amination. DFT calcns. revealed that iron porphyrin nitrene shows similar activity as cobalt porphyrin nitrene and iron porphyrin carbene toward H-abstraction and C-H amination.
- 10Kuijpers, P. F.; van der Vlugt, J. I.; Schneider, S.; de Bruin, B. Nitrene Radical Intermediates in Catalytic Synthesis. Chem. Eur. J. 2017, 23, 13819– 13829, DOI: 10.1002/chem.201702537Google Scholar10https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2sXhsV2jur7I&md5=446e3c76df830014fbbc0cf52d63feceNitrene Radical Intermediates in Catalytic SynthesisKuijpers, Petrus F.; van der Vlugt, Jarl Ivar; Schneider, Sven; de Bruin, BasChemistry - A European Journal (2017), 23 (56), 13819-13829CODEN: CEUJED; ISSN:0947-6539. (Wiley-VCH Verlag GmbH & Co. KGaA)Nitrene radical complexes are reactive intermediates with discrete spin d. at the nitrogen-atom of the nitrene moiety. These species have become important intermediates for org. synthesis, being invoked in a broad range of C-H functionalization and aziridination reactions. Nitrene radical complexes have intriguing electronic structures, and are best described as one-electron reduced Fischer type nitrenes. They can be generated by intramol. single electron transfer to the "redox non-innocent" nitrene moiety at the metal. Nitrene radicals generated at open-shell cobalt(II) have thus far received most attention in terms of spectroscopic characterization, reactivity screening, catalytic nitrene-transfer reactions and (computational and exptl.) mechanistic studies, but some interesting iron and precious metal catalysts have also been employed in related reactions involving nitrene radicals. In some cases, redox-active ligands are used to facilitate intramol. single electron transfer from the complex to the nitrene moiety. Org. azides are among the most attractive nitrene precursors in this field, typically requiring pre-activated org. azides (e.g. RSO2N3, (RO)2P(=O)N3, ROC(=O)N3 and alike) to achieve efficient and selective catalysis. Challenging, non-activated aliph. org. azides were recently added to the palette of reagents useful in synthetically relevant reactions proceeding via nitrene radical intermediates. This concept article describes the electronic structure of nitrene radical complexes, emphasizes on their usefulness in the catalytic synthesis of various org. products, and highlights the important developments in the field.
- 11Mahajan, M.; Mondal, B. Origin of the Distinctive Electronic Structure of Co- and Fe-Porphyrin-Nitrene and Its Effect on Their Nitrene Transfer Reactivity. Inorg. Chem. 2023, 62, 5810– 5821, DOI: 10.1021/acs.inorgchem.3c00463Google Scholar11https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3sXmtFOltb4%253D&md5=58b94ec61c589dfa318a9659fe09d9a2Origin of the Distinctive Electronic Structure of Co- and Fe-Porphyrin-Nitrene and Its Effect on Their Nitrene Transfer ReactivityMahajan, Mayank; Mondal, BhaskarInorganic Chemistry (2023), 62 (14), 5810-5821CODEN: INOCAJ; ISSN:0020-1669. (American Chemical Society)Metal-bound nitrene species are the crucial intermediate in catalytic nitrene transfer reactions exhibited by engineered enzymes and mol. catalysts. The electronic structure of such species and its correlation with nitrene transfer reactivity have not been fully understood yet. This work presents an in-depth electronic structure anal. and nitrene transfer reactivity of two prototypical metal-nitrene species derived from CoII(TPP) and FeII(TPP) (TPP = meso-tetraphenylporphyrin) complexes and tosyl azide nitrene precursor. Parallel to the well-known "cobalt(III)-imidyl" electronic structure of the Co-porphyrin-nitrene species, the formation mechanism and electronic structure of the elusive Fe-porphyrin-nitrene have been established using d. functional theory (DFT) and multiconfigurational complete active-space SCF (CASSCF) calcns. Electronic structure evolution anal. for the metal-nitrene formation step and CASSCF-derived natural orbitals advocates that the electronic nature of the metal-nitrene (M-N) core of Fe(TPP) is strikingly different from that of the Co(TPP). Specifically, the "imidyl" nature of the Co-porphyrin-nitrene [(TPP)CoIII-•NTos] (Tos = tosyl) (I1Co) is contrasted by the "imido-like" character of the Fe-porphyrin-nitrene [(TPP)FeIV[Formula Omitted]NTos] (I1Fe). This difference between Co- and Fe-nitrene has been attributed to the addnl. interactions between Fe-dπ and N-pπ orbitals in Fe-nitrene, which is further complemented by the shortened Fe-N bond length of 1.71 Å. This stronger M-N bond in Fe-nitrene compared to the Co-nitrene is also reflected in the higher exothermicity (ΔΔH = 16 kcal/mol) of the Fe-nitrene formation step. The "imido-like" character renders a relatively lower spin population on the nitrene nitrogen (+0.42) in the Fe-nitrene complex I1Fe, which undergoes the nitrene transfer to the C=C bond of styrene with a considerably higher enthalpy barrier (ΔH‡ = 10.0 kcal/mol) compared to the Co congener I1Co (ΔH‡ = 5.6 kcal/mol) possessing a higher nitrogen spin population (+0.88) and a relatively weaker M-N bond (Co-N = 1.80 Å).
- 12Svastits, E. W.; Dawson, J. H.; Breslow, R.; Gellman, S. H. Functionalized Nitrogen Atom Transfer Catalyzed by Cytochrome P-450. J. Am. Chem. Soc. 1985, 107, 6427– 6428, DOI: 10.1021/ja00308a064Google Scholar12https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADyaL2MXmtV2it78%253D&md5=f51c0b1780e8d4ada3255dfcc386e575Functionalized nitrogen atom transfer catalyzed by cytochrome P-450Svastits, Edmund W.; Dawson, John H.; Breslow, Ronald; Gellman, Samuel H.Journal of the American Chemical Society (1985), 107 (22), 6427-8CODEN: JACSAT; ISSN:0002-7863.Purified rabbit liver microsomal cytochrome P 450 (I) catalyzed the inter- and intramol. transfer and insertion of a functionalized N atom into a C-H bond. Although metalloporphyrins and metal complexes have previously been found to catalyze this reaction, this is the 1st report of N atom transfer by I. The intramol. reaction rate was linear with time, I concn., and substrate concn., having a lower limit (because of substrate soly.) of 1.0 nmol product/nmol I/min for the LM3,4 form mixt. The reaction was dependent on the integrity of I; neither partially denatured (P-420) nor extensively denatured I was able to catalyze the reaction. Both the intra- and intermol. transfer reactions were I form-dependent, with the LM2 form exhibiting essentially no activity in contrast to either crude liver microsomes or a mixt. of the LM3 and LM4 purified forms.
- 13Singh, R.; Bordeaux, M.; Fasan, R. P450-Catalyzed Intramolecular sp3 C–H Amination with Arylsulfonyl Azide Substrates. ACS Catal. 2014, 4, 546– 552, DOI: 10.1021/cs400893nGoogle Scholar13https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2cXjtFantg%253D%253D&md5=1bac46ddee013c69af256110e433f98bP450-Catalyzed Intramolecular sp3 C-H Amination with Arylsulfonyl Azide SubstratesSingh, Ritesh; Bordeaux, Melanie; Fasan, RudiACS Catalysis (2014), 4 (2), 546-552CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)The direct amination of aliph. C-H bonds represents a most valuable transformation in org. chem. While a no. of transition-metal-based catalysts have been developed and investigated for this purpose, the possibility to execute this transformation with biol. catalysts has remained largely unexplored. Here, we report that cytochrome P 450 enzymes can serve as efficient catalysts for mediating intramol. benzylic C-H amination reactions in a variety of arylsulfonyl azide compds. Under optimized conditions, the P 450 catalysts were found to support up to 390 total turnovers leading to the formation of the desired sultam products with excellent regioselectivity. In addn., the chiral environment provided by the enzyme active site allowed for the reaction to proceed in a stereo- and enantioselective manner. The C-H amination activity, substrate profile, and enantio/stereoselectivity of these catalysts could be modulated by utilizing enzyme variants with engineered active sites.
- 14Bordeaux, M.; Singh, R.; Fasan, R. Intramolecular C(sp3)–H Amination of Arylsulfonyl Azides with Engineered and Artificial Myoglobin-Based Catalysts. Bioorg. Med. Chem. 2014, 22, 5697– 5704, DOI: 10.1016/j.bmc.2014.05.015Google Scholar14https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2cXpslCnsrk%253D&md5=e7ce72a1889d52610b523f02ff9933d9Intramolecular C(sp3)-H amination of arylsulfonyl azides with engineered and artificial myoglobin-based catalystsBordeaux, Melanie; Singh, Ritesh; Fasan, RudiBioorganic & Medicinal Chemistry (2014), 22 (20), 5697-5704CODEN: BMECEP; ISSN:0968-0896. (Elsevier B.V.)The direct conversion of aliph. C-H bonds into C-N bonds provides an attractive approach to the introduction of nitrogen-contg. functionalities in org. mols. Following the recent discovery that cytochrome P 450 enzymes can catalyze the cyclization of arylsulfonyl azide compds. via an intramol. C(sp3)-H amination reaction, we have explored here the C-H amination reactivity of other hemoproteins. Various heme-contg. proteins, and in particular myoglobin and horseradish peroxidase, were found to be capable of catalyzing this transformation. Based on this finding, a series of engineered and artificial myoglobin variants contg. active site mutations and non-native Mn- and Co-protoporphyrin IX cofactors, resp., were prepd. to investigate the effect of these structural changes on the catalytic activity and selectivity of these catalysts. Our studies showed that metallo-substituted myoglobins constitute viable C-H amination catalysts, revealing a distinctive reactivity trend as compared to synthetic metalloporphyrin counterparts. On the other hand, amino acid substitutions at the level of the heme pocket were found to be beneficial toward improving the stereo- and enantioselectivity of these Mb-catalyzed reactions. Mechanistic studies involving kinetic isotope effect expts. indicate that C-H bond cleavage is implicated in the rate-limiting step of myoglobin-catalyzed amination of arylsulfonyl azides. Altogether, these studies indicate that myoglobin constitutes a promising scaffold for the design and development of C-H amination catalysts.
- 15McIntosh, J. A.; Coelho, P. S.; Farwell, C. C.; Wang, Z. J.; Lewis, J. C.; Brown, T. R.; Arnold, F. H. Enantioselective Intramolecular C-H Amination Catalyzed by Engineered Cytochrome P450 Enzymes in Vitro and in Vivo. Angew. Chem., Int. Ed. 2013, 52, 9309– 9312, DOI: 10.1002/anie.201304401Google Scholar15https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC3sXhtFOhtL7E&md5=7db28cfd2847377e1ff7130550622fedEnantioselective Intramolecular C-H Amination Catalyzed by Engineered Cytochrome P450 Enzymes In Vitro and In VivoMcIntosh, John A.; Coelho, Pedro S.; Farwell, Christopher C.; Wang, Z. Jane; Lewis, Jared C.; Brown, Tristan R.; Arnold, Frances H.Angewandte Chemie, International Edition (2013), 52 (35), 9309-9312CODEN: ACIEF5; ISSN:1433-7851. (Wiley-VCH Verlag GmbH & Co. KGaA)Though P 450 enzymes are masters of oxygen activation and insertion into C-H bonds, their ability to use nitrogen for the same purpose has so far not been explored. Engineered variants of cytochrome P 450BM3 have now been found to catalyze intramol. C-H aminations in azide substrates. Mutations to two highly conserved residues significantly increased this activity.
- 16Cho, I.; Prier, C. K.; Jia, Z. J.; Zhang, R. K.; Görbe, T.; Arnold, F. H. Enantioselective Aminohydroxylation of Styrenyl Olefins Catalyzed by an Engineered Hemoprotein. Angew. Chem., Int. Ed. 2019, 58, 3138– 3142, DOI: 10.1002/anie.201812968Google Scholar16https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC1MXhvFKgur8%253D&md5=c6948aa2bdbfaa9657335af34eec961dEnantioselective aminohydroxylation of styrenyl olefins catalyzed by an engineered hemoproteinCho, Inha; Prier, Christopher K.; Jia, Zhi-Jun; Zhang, Ruijie K.; Goerbe, Tamas; Arnold, Frances H.Angewandte Chemie, International Edition (2019), 58 (10), 3138-3142CODEN: ACIEF5; ISSN:1433-7851. (Wiley-VCH Verlag GmbH & Co. KGaA)Chiral 1,2-amino alcs. are widely represented in biol. active compds. from neurotransmitters to antivirals. While many synthetic methods have been developed for accessing amino alcs., the direct aminohydroxylation of alkenes to unprotected, enantio-enriched amino alcs. remains a challenge. Using directed evolution, we have engineered a hemoprotein biocatalyst based on a thermostable cytochrome c that directly transforms alkenes to amino alcs. with high enantioselectivity (up to 2500 TTN and 90 % ee) under anaerobic conditions with O-pivaloylhydroxylamine as an aminating reagent. The reaction is proposed to proceed via a reactive iron-nitrogen species generated in the enzyme active site, enabling tuning of the catalyst's activity and selectivity by protein engineering.
- 17Moore, E. J.; Fasan, R. Effect of Proximal Ligand Substitutions on the Carbene and Nitrene Transferase Activity of Myoglobin. Tetrahedron 2019, 75, 2357– 2363, DOI: 10.1016/j.tet.2019.03.009Google Scholar17https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC1MXlslehs7s%253D&md5=9e64d70c0d9255bf8e72f43da07edeb0Effect of proximal ligand substitutions on the carbene and nitrene transferase activity of myoglobinMoore, Eric J.; Fasan, RudiTetrahedron (2019), 75 (16), 2357-2363CODEN: TETRAB; ISSN:0040-4020. (Elsevier Ltd.)Engineered myoglobins (Mbs) were recently shown to be effective catalysts for abiol. carbene and nitrene transfer reactions. Here, we investigated the impact of substituting the conserved heme-coordinating histidine residue with both proteinogenic (Cys, Ser, Tyr, Asp) and non-proteinogenic Lewis basic amino acids (3-(3'-pyridyl)-alanine, p-aminophenylalanine, and β-(3-thienyl)-alanine), on the reactivity of this metalloprotein toward these abiotic transformations. These studies showed that mutation of the proximal histidine residue with both natural and non-natural amino acids result in stable myoglobin variants that can function as both carbene and nitrene transferases. In addn., substitution of the proximal histidine with an aspartate residue led to a myoglobin-based catalyst capable of promoting stereoselective olefin cyclopropanation under nonreducing conditions. Overall, these studies demonstrate that proximal ligand substitution provides a promising strategy to tune the reactivity of myoglobin-based carbene and nitrene transfer catalysts and provide a first, proof-of-principle demonstration of the viability of pyridine-, thiophene-, and aniline-based unnatural amino acids for metalloprotein engineering.
- 18Kalita, S.; Shaik, S.; Dubey, K. D. MD Simulations and QM/MM Calculations Reveal the Key Mechanistic Elements Which Are Responsible for the Efficient C-H Amination Reaction Performed by a Bioengineered P450 Enzyme. Chem. Sci. 2021, 12, 14507– 14518, DOI: 10.1039/D1SC03489HGoogle Scholar18https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3MXit1aqt7bP&md5=b01a13ce3d0357b78ae9887855bb2a72MD simulations and QM/MM calculations reveal the key mechanistic elements which are responsible for the efficient C-H amination reaction performed by a bioengineered P450 enzymeKalita, Surajit; Shaik, Sason; Dubey, Kshatresh DuttaChemical Science (2021), 12 (43), 14507-14518CODEN: CSHCCN; ISSN:2041-6520. (Royal Society of Chemistry)An enzyme which is capable of catalyzing C-H amination reactions is considered to be a dream tool for chemists due to its pharmaceutical potential and greener approach. Recently, the Arnold group achieved this feat using an engineered CYP411 enzyme, which further undergoes a random directed evolution which increases its efficiency and selectivity. The present study provides mechanistic insight and the root cause of the success of these mutations to enhance the reactivity and selectivity of the mutant enzyme. This is achieved by means of comprehensive MD simulations and hybrid QM/MM calcns. The study shows that the efficient C-H amination by the engineered CYP411 is a combined outcome of electronic and steric effects. The mutation of the axial cysteine ligand to serine relays electron d. to the Fe ion in the heme, and thereby enhances the bonding capability of the heme-iron to the nitrogen atom of the tosyl azide. In comparison, the native cysteine-ligated P 450 cannot bind the tosyl azide. Addnl., the A78V and A82L mutations in P411 provide 'bulk' to the active site which increases the enantioselectivity via a steric effect. At the same time, the QM/MM calcns. elucidate the C-H amination by the iron nitrenoid, revealing a mechanism analogous to Compd. I in the native C-H hydroxylation by P 450.
- 19Wei, Y.; Conklin, M.; Zhang, Y. Biocatalytic Intramolecular C–H Aminations via Engineered Heme Proteins: Full Reaction Pathways and “axial” Ligand Effects. Chem. Eur. J. 2022, 28, e202202006 DOI: 10.1002/chem.202202006Google Scholar19https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB38Xit1aqtLbK&md5=4b4c8a8402e9efc9019bcf5739a45195Biocatalytic Intramolecular C-H aminations via Engineered Heme Proteins: Full Reaction Pathways and Axial Ligand EffectsWei, Yang; Conklin, Melissa; Zhang, YongChemistry - A European Journal (2022), 28 (59), e202202006CODEN: CEUJED; ISSN:0947-6539. (Wiley-VCH Verlag GmbH & Co. KGaA)Engineered heme protein biocatalysts provide an efficient and sustainable approach to develop amine-contg. compds. through C-H amination. A quantum chem. study to reveal the complete heme catalyzed intramol. C-H amination pathway and protein axial ligand effect is reported, using reactions of an exptl. used arylsulfonylazide with hemes contg. L = none, SH-, MeO-, and MeOH to simulate no axial ligand, neg. charged Cys and Ser ligands, and a neutral ligand for comparison. Nitrene formation is the overall rate-detg. step (RDS) and the catalyst with Ser ligand has the best reactivity, consistent with exptl. reports. Both RDS and non-RDS (nitrene transfer) transition states follow the barrier trend of MeO-<SH-<MeOH<None due to the charge donation capability of the axial ligand to influence the key charge transfer process as the electronic driving forces. Results also provide new ideas for future biocatalyst design with enhanced reactivities.
- 20Yang, Y.; Cho, I.; Qi, X.; Liu, P.; Arnold, F. H. An Enzymatic Platform for the Asymmetric Amination of Primary, Secondary and Tertiary C(sp3)–H Bonds. Nat. Chem. 2019, 11, 987– 993, DOI: 10.1038/s41557-019-0343-5Google Scholar20https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC1MXhvFyhsr3F&md5=70f7e39108f9a91531d3737d773ad274An enzymatic platform for the asymmetric amination of primary, secondary and tertiary C(sp3)-H bondsYang, Yang; Cho, Inha; Qi, Xiaotian; Liu, Peng; Arnold, Frances H.Nature Chemistry (2019), 11 (11), 987-993CODEN: NCAHBB; ISSN:1755-4330. (Nature Research)The ability to selectively functionalize ubiquitous C-H bonds streamlines the construction of complex mol. architectures from easily available precursors. Here we report enzyme catalysts derived from a cytochrome P 450 that use a nitrene transfer mechanism for the enantioselective amination of primary, secondary and tertiary C(sp3)-H bonds. These fully genetically encoded enzymes are produced and function in bacteria, where they can be optimized by directed evolution for a broad spectrum of enantioselective C(sp3)-H amination reactions. These catalysts can aminate a variety of benzylic, allylic and aliph. C-H bonds in excellent enantioselectivity with access to either antipode of product. Enantioselective amination of primary C(sp3)-H bonds in substrates that bear geminal di-Me substituents furnished chiral amines that feature a quaternary stereocenter. Moreover, these enzymes enabled the enantioconvergent transformation of racemic substrates that possess a tertiary C(sp3)-H bond to afford products that bear a tetrasubstituted stereocenter, a process that has eluded small-mol. catalysts. Further engineering allowed for the enantioselective construction of methyl-Et stereocenters, which is notoriously challenging in asym. catalysis.
- 21Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Scalmani, G.; Barone, V.; Petersson, G. A.; Nakatsuji, H.; Li, X.; Caricato, M.; Marenich, A. V.; Bloino, J.; Janesko, B. G.; Gomperts, R.; Mennucci, B.; Hratchian, H. P.; Ortiz, J. V.; Izmaylov, A. F.; Sonnenberg, J. L.; Williams-Young, D.; Ding, F.; Lipparini, F.; Egidi, F.; Goings, J.; Peng, B.; Petrone, A.; Henderson, T.; Ranasinghe, D.; Zakrzewski, V. G.; Gao, J.; Rega, N.; Zheng, G.; Liang, W.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Vreven, T.; Throssell, K.; Montgomery, J. A., Jr.; Peralta, J. E.; Ogliaro, F.; Bearpark, M. J.; Heyd, J. J.; Brothers, E. N.; Kudin, K. N.; Staroverov, V. N.; Keith, T. A.; Kobayashi, R.; Normand, J.; Raghavachari, K.; Rendell, A. P.; Burant, J. C.; Iyengar, S. S.; Tomasi, J.; Cossi, M.; Millam, J. M.; Klene, M.; Adamo, C.; Cammi, R.; Ochterski, J. W.; Martin, R. L.; Morokuma, K.; Farkas, O.; Foresman, J. B.; Fox, D. J. Gaussian 16, Revision C.01; Gaussian, Inc.: Wallingford CT, 2016.Google ScholarThere is no corresponding record for this reference.
- 22Lee, C.; Yang, W.; Parr, R. G. Development of the Colle-Salvetti Correlation-Energy Formula into a Functional of the Electron Density. Phys. Rev. B 1988, 37, 785– 789, DOI: 10.1103/PhysRevB.37.785Google Scholar22https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADyaL1cXktFWrtbw%253D&md5=ee7b59267a2ff72e15171a481819ccf8Development of the Colle-Salvetti correlation-energy formula into a functional of the electron densityLee, Chengteh; Yang, Weitao; Parr, Robert G.Physical Review B: Condensed Matter and Materials Physics (1988), 37 (2), 785-9CODEN: PRBMDO; ISSN:0163-1829.A correlation-energy formula due to R. Colle and D. Salvetti (1975), in which the correlation energy d. is expressed in terms of the electron d. and a Laplacian of the 2nd-order Hartree-Fock d. matrix, is restated as a formula involving the d. and local kinetic-energy d. On insertion of gradient expansions for the local kinetic-energy d., d.-functional formulas for the correlation energy and correlation potential are then obtained. Through numerical calcns. on a no. of atoms, pos. ions, and mols., of both open- and closed-shell type, it is demonstrated that these formulas, like the original Colle-Salvetti formulas, give correlation energies within a few percent.
- 23Becke, A. D. Density-Functional Thermochemistry. III. The Role of Exact Exchange. J. Chem. Phys. 1993, 98, 5648– 5652, DOI: 10.1063/1.464913Google Scholar23https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADyaK3sXisVWgtrw%253D&md5=291bbfc119095338bb1624f0c21c7ca8Density-functional thermochemistry. III. The role of exact exchangeBecke, Axel D.Journal of Chemical Physics (1993), 98 (7), 5648-52CODEN: JCPSA6; ISSN:0021-9606.Despite the remarkable thermochem. accuracy of Kohn-Sham d.-functional theories with gradient corrections for exchange-correlation, the author believes that further improvements are unlikely unless exact-exchange information is considered. Arguments to support this view are presented, and a semiempirical exchange-correlation functional (contg. local-spin-d., gradient, and exact-exchange terms) is tested for 56 atomization energies, 42 ionization potentials, 8 proton affinities, and 10 total at. energies of first- and second-row systems. This functional performs better than previous functionals with gradient corrections only, and fits expt. atomization energies with an impressively small av. abs. deviation of 2.4 kcal/mol.
- 24Moreau, Y.; Chen, H.; Derat, E.; Hirao, H.; Bolm, C.; Shaik, S. NR Transfer Reactivity of Azo-Compound I of P450. How Does the Nitrogen Substituent Tune the Reactivity of the Species toward C-H and C = C Activation?. J. Phys. Chem. B 2007, 111, 10288– 10299, DOI: 10.1021/jp0743065Google Scholar24https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD2sXos1Slu70%253D&md5=76ea380b7e224cb407991d647bf4fca9NR Transfer Reactivity of Azo-Compound I of P450. How Does the Nitrogen Substituent Tune the Reactivity of the Species toward C-H and C:C Activation?Moreau, Yohann; Chen, Hui; Derat, Etienne; Hirao, Hajime; Bolm, Carsten; Shaik, SasonJournal of Physical Chemistry B (2007), 111 (34), 10288-10299CODEN: JPCBFK; ISSN:1520-6106. (American Chemical Society)The authors studied electronic structures and reactivity patterns of azo-compd. I species (RN-Cpd I) by comparison to O-Cpd I of, e.g., cytochrome P 450. The RN-Cpd I species are capable of C=C aziridination and C-H amidation, in a two-state mechanism similar to that of O-Cpd I. However, unlike O-Cpd I, here the nitrogen substituent (R) exerts a major impact on structure and reactivity. Thus, Fe = NR bonds of RN-Cpd I will generally be substantially longer than Fe = O bonds; electron-withdrawing R groups will generate a very long Fe = N bond, whereas electron-releasing R groups should have the opposite effect and hence a shorter Fe = N bond. The R substituent controls also the reactivity of RN-Cpd I toward C=C and C-H bonds by exerting steric and electronic effects. Anal. shows that an electron-releasing substituent will lower the barriers for both bond activation reactions, since the electronic factor makes the reactions highly exothermic, while an electron-withdrawing one should raise both barriers. The steric bulk of the substituent is predicted to inhibit more strongly the aziridination reactions. It is predicted that electron-releasing substituents with small bulk will create powerful aziridination reagents, whereas electron-withdrawing substituents like MeSO2 will prefer C-H bond activation with preference that increases with steric bulk. Finally, the study predicts (i) that the reactions of RN-Cpd I will be less stereospecific than those of O-Cpd I and (ii) that aziridination will be more stereoselective than amidation.
- 25Sharon, D. A.; Mallick, D.; Wang, B.; Shaik, S. Computation Sheds Insight into Iron Porphyrin Carbenes’ Electronic Structure, Formation, and N-H Insertion Reactivity. J. Am. Chem. Soc. 2016, 138, 9597– 9610, DOI: 10.1021/jacs.6b04636Google Scholar25https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC28XhtVKisLzN&md5=4613b53fe83b6c8888c64009274ee1f1Computation Sheds Insight into Iron Porphyrin Carbenes' Electronic Structure, Formation, and N-H Insertion ReactivitySharon, Dina A.; Mallick, Dibyendu; Wang, Binju; Shaik, SasonJournal of the American Chemical Society (2016), 138 (30), 9597-9610CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)Iron porphyrin carbenes constitute a new frontier of species with considerable synthetic potential. Exquisitely engineered myoglobin and cytochrome P 450 enzymes can generate these complexes and facilitate the transformations they mediate. The current work harnesses d. functional theor. methods to provide insight into the electronic structure, formation, and N-H insertion reactivity of an iron porphyrin carbene, [Fe(Por)(SCH3)(CHCO2Et)]-, a model of a complex believed to exist in an exptl. studied artificial metalloenzyme. The ground state electronic structure of the terminal form of this complex is an open-shell singlet, with two antiferromagnetically coupled electrons residing on the iron center and carbene ligand. As the authors shall reveal, the bonding properties of [Fe(Por)(SCH3)(CHCO2Et)]-are remarkably analogous to those of ferric heme superoxide complexes. The carbene forms by dinitrogen loss from Et diazoacetate. This reaction occurs preferentially through an open-shell singlet transition state: iron donates electron d. to weaken the C-N bond undergoing cleavage. Once formed, the iron porphyrin carbene accomplishes N-H insertion via nucleophilic attack. The resulting ylide then rearranges, using an internal carbonyl base, to form an enol that leads to the product. The findings rationalize exptl. obsd. reactivity trends reported in artificial metalloenzymes employing iron porphyrin carbenes. Also, these results suggest a possible expansion of enzymic substrate scope, to include aliph. amines. Thus, this work, among the first several computational explorations of these species, contributes insights and predictions to the surging interest in iron porphyrin carbenes and their synthetic potential.
- 26Schäfer, A.; Horn, H.; Ahlrichs, R. Fully Optimized Contracted Gaussian Basis Sets for Atoms Li to Kr. J. Chem. Phys. 1992, 97, 2571– 2577, DOI: 10.1063/1.463096Google ScholarThere is no corresponding record for this reference.
- 27Schäfer, A.; Huber, C.; Ahlrichs, R. Fully Optimized Contracted Gaussian Basis Sets of Triple Zeta Valence Quality for Atoms Li to Kr. J. Chem. Phys. 1994, 100, 5829– 5835, DOI: 10.1063/1.467146Google ScholarThere is no corresponding record for this reference.
- 28Grimme, S.; Ehrlich, S.; Goerigk, L. Effect of the Damping Function in Dispersion Corrected Density Functional Theory. J. Comput. Chem. 2011, 32, 1456– 1465, DOI: 10.1002/jcc.21759Google Scholar28https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC3MXjsF2isL0%253D&md5=370c4fe3164f548718b4bfcf22d1c753Effect of the damping function in dispersion corrected density functional theoryGrimme, Stefan; Ehrlich, Stephan; Goerigk, LarsJournal of Computational Chemistry (2011), 32 (7), 1456-1465CODEN: JCCHDD; ISSN:0192-8651. (John Wiley & Sons, Inc.)It is shown by an extensive benchmark on mol. energy data that the math. form of the damping function in DFT-D methods has only a minor impact on the quality of the results. For 12 different functionals, a std. "zero-damping" formula and rational damping to finite values for small interat. distances according to Becke and Johnson (BJ-damping) has been tested. The same (DFT-D3) scheme for the computation of the dispersion coeffs. is used. The BJ-damping requires one fit parameter more for each functional (three instead of two) but has the advantage of avoiding repulsive interat. forces at shorter distances. With BJ-damping better results for nonbonded distances and more clear effects of intramol. dispersion in four representative mol. structures are found. For the noncovalently-bonded structures in the S22 set, both schemes lead to very similar intermol. distances. For noncovalent interaction energies BJ-damping performs slightly better but both variants can be recommended in general. The exception to this is Hartree-Fock that can be recommended only in the BJ-variant and which is then close to the accuracy of cor. GGAs for non-covalent interactions. According to the thermodn. benchmarks BJ-damping is more accurate esp. for medium-range electron correlation problems and only small and practically insignificant double-counting effects are obsd. It seems to provide a phys. correct short-range behavior of correlation/dispersion even with unmodified std. functionals. In any case, the differences between the two methods are much smaller than the overall dispersion effect and often also smaller than the influence of the underlying d. functional. © 2011 Wiley Periodicals, Inc.; J. Comput. Chem., 2011.
- 29Marenich, A. V.; Cramer, C. J.; Truhlar, D. G. Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface Tensions. J. Phys. Chem. B 2009, 113, 6378– 6396, DOI: 10.1021/jp810292nGoogle Scholar29https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD1MXksV2is74%253D&md5=54931a64c70d28445ee53876a8b1a4b9Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface TensionsMarenich, Aleksandr V.; Cramer, Christopher J.; Truhlar, Donald G.Journal of Physical Chemistry B (2009), 113 (18), 6378-6396CODEN: JPCBFK; ISSN:1520-6106. (American Chemical Society)We present a new continuum solvation model based on the quantum mech. charge d. of a solute mol. interacting with a continuum description of the solvent. The model is called SMD, where the "D" stands for "d." to denote that the full solute electron d. is used without defining partial at. charges. "Continuum" denotes that the solvent is not represented explicitly but rather as a dielec. medium with surface tension at the solute-solvent boundary. SMD is a universal solvation model, where "universal" denotes its applicability to any charged or uncharged solute in any solvent or liq. medium for which a few key descriptors are known (in particular, dielec. const., refractive index, bulk surface tension, and acidity and basicity parameters). The model separates the observable solvation free energy into two main components. The first component is the bulk electrostatic contribution arising from a self-consistent reaction field treatment that involves the soln. of the nonhomogeneous Poisson equation for electrostatics in terms of the integral-equation-formalism polarizable continuum model (IEF-PCM). The cavities for the bulk electrostatic calcn. are defined by superpositions of nuclear-centered spheres. The second component is called the cavity-dispersion-solvent-structure term and is the contribution arising from short-range interactions between the solute and solvent mols. in the first solvation shell. This contribution is a sum of terms that are proportional (with geometry-dependent proportionality consts. called at. surface tensions) to the solvent-accessible surface areas of the individual atoms of the solute. The SMD model has been parametrized with a training set of 2821 solvation data including 112 aq. ionic solvation free energies, 220 solvation free energies for 166 ions in acetonitrile, methanol, and DMSO, 2346 solvation free energies for 318 neutral solutes in 91 solvents (90 nonaq. org. solvents and water), and 143 transfer free energies for 93 neutral solutes between water and 15 org. solvents. The elements present in the solutes are H, C, N, O, F, Si, P, S, Cl, and Br. The SMD model employs a single set of parameters (intrinsic at. Coulomb radii and at. surface tension coeffs.) optimized over six electronic structure methods: M05-2X/MIDI!6D, M05-2X/6-31G*, M05-2X/6-31+G**, M05-2X/cc-pVTZ, B3LYP/6-31G*, and HF/6-31G*. Although the SMD model has been parametrized using the IEF-PCM protocol for bulk electrostatics, it may also be employed with other algorithms for solving the nonhomogeneous Poisson equation for continuum solvation calcns. in which the solute is represented by its electron d. in real space. This includes, for example, the conductor-like screening algorithm. With the 6-31G* basis set, the SMD model achieves mean unsigned errors of 0.6-1.0 kcal/mol in the solvation free energies of tested neutrals and mean unsigned errors of 4 kcal/mol on av. for ions with either Gaussian03 or GAMESS.
- 30Li, C.; Wu, W.; Cho, K.; Shaik, S. Oxidation of Tertiary Amines by Cytochrome P450─Kinetic Isotope Effect as a Spin-State Reactivity Probe. Chem. Eur. J. 2009, 15, 8492– 8503, DOI: 10.1002/chem.200802215Google Scholar30https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD1MXhtVGkurnP&md5=6cefc570a06bd30948ba49b2bc5e5731Oxidation of Tertiary Amines by Cytochrome P450-Kinetic Isotope Effect as a Spin-State Reactivity ProbeLi, Chunsen; Wu, Wei; Cho, Kyung-Bin; Shaik, SasonChemistry - A European Journal (2009), 15 (34), 8492-8503, S8492/1-S8492/37CODEN: CEUJED; ISSN:0947-6539. (Wiley-VCH Verlag GmbH & Co. KGaA)Two types of tertiary amine oxidn. processes, namely, N-dealkylation and N-oxygenation, by compd. I (Cpd I) of cytochrome P 450 are studied theor. using hybrid DFT calcns. All the calcns. show that both N-dealkylation and N-oxygenation of trimethylamine (TMA) proceed preferentially from the low-spin (LS) state of Cpd I. Indeed, the computed kinetic isotope effects (KIEs) for the rate-controlling hydrogen abstraction step of dealkylation show that only the KIELS fits the exptl. datum, whereas the corresponding value for the high-spin (HS) process is much higher. These results second those published before for N,N-dimethylaniline (DMA), and as such, they further confirm the conclusion drawn then that KIEs can be a sensitive probe of spin state reactivity. The ferric-carbinolamine of TMA decomps. most likely in a non-enzymic reaction since the Fe-O bond dissocn. energy (BDE) is neg. The computational results reveal that in the reverse reaction of N-oxygenation, the N-oxide of arom. amine can serve as a better oxygen donor than that of aliph. amine to generate Cpd I. This capability of the N-oxo derivs. of arom. amines to transfer oxygen to the heme, and thereby generate Cpd I, is in good accord with exptl. data previously reported.
- 31Harvey, J. N.; Aschi, M.; Schwarz, H.; Koch, W. The Singlet and Triplet States of Phenyl Cation. A Hybrid Approach for Locating Minimum Energy Crossing Points between Non-Interacting Potential Energy Surfaces. Theor. Chem. Acc. 1998, 99, 95– 99, DOI: 10.1007/s002140050309Google Scholar31https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADyaK1cXivFersbY%253D&md5=9c4c10c86066903756d178c2b2ff1988The singlet and triplet states of phenyl cation. A hybrid approach for locating minimum energy crossing points between non-interacting potential energy surfacesHarvey, Jeremy N.; Aschi, Massimiliano; Schwarz, Helmut; Koch, WolframTheoretical Chemistry Accounts (1998), 99 (2), 95-99CODEN: TCACFW; ISSN:1432-881X. (Springer-Verlag)The Ph cation is known to have 2 low-energy min., corresponding to 1A1 and 3B1 states, the first of which is more stable by ∼25 kcal/mol. The min. energy crossing point between these 2 surfaces, located at various levels including a hybrid method first described here, lies just above the min. of the triplet, 0.12 kcal/mol at the CCSD(T)/cc-pVDZ// B3LYP/SV level, and there is significant spin-orbit coupling between the surfaces at this point. On the basis of these results, the lifetime of the triplet is expected to be very short.
- 32Rodríguez-Guerra, J. Jaimergp/easymecp: V0.3.2. Zenodo November 27, 2020.Google ScholarThere is no corresponding record for this reference.
- 33Roos, B. O. The Complete Active Space Self-Consistent Field Method and Its Applications in Electronic Structure Calculations. Adv. Chem. Phys. 1987, 69, 399– 445, DOI: 10.1002/9780470142943.ch7Google Scholar33https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADyaL1cXislSnsQ%253D%253D&md5=a0f607142d6f4c16ebaa41b500c3e5feThe complete active space self-consistent field method and its applications in electronic structure calculationsRoos, BjoernAdvances in Chemical Physics (1987), 69 (Ab Initio Methods Quantum Chem.--2), 399-445CODEN: ADCPAA; ISSN:0065-2385.A review with 121 refs.
- 34Kupper, C.; Mondal, B.; Serrano-Plana, J.; Klawitter, I.; Neese, F.; Costas, M.; Ye, S.; Meyer, F. Nonclassical Single-State Reactivity of an Oxo-Iron(IV) Complex Confined to Triplet Pathways. J. Am. Chem. Soc. 2017, 139, 8939– 8949, DOI: 10.1021/jacs.7b03255Google Scholar34https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2sXos1Sgsb0%253D&md5=7eb94d7b8a17d4858c85280098ad86b9Nonclassical Single-State Reactivity of an Oxo-Iron(IV) Complex Confined to Triplet PathwaysKupper, Claudia; Mondal, Bhaskar; Serrano-Plana, Joan; Klawitter, Iris; Neese, Frank; Costas, Miquel; Ye, Shengfa; Meyer, FrancJournal of the American Chemical Society (2017), 139 (26), 8939-8949CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)C-H bond activation mediated by oxo-iron (IV) species represents the key step of many heme and nonheme O2-activating enzymes. Of crucial interest is the effect of spin state of the FeIV(O) unit. Here we report the C-H activation kinetics and corresponding theor. investigations of an exclusive tetracarbene ligated oxo-iron(IV) complex, [LNHCFeIV(O)(MeCN)]2+ (1). Kinetic traces using substrates with bond dissocn. energies (BDEs) up to 80 kcal mol-1 show pseudo-first-order behavior and large but temp.-dependent kinetic isotope effects (KIE 32 at -40 °C). When compared with a topol. related oxo-iron(IV) complex bearing an equatorial N-donor ligand, [LTMCFeIV(O) (MeCN)]2+ (A), the tetracarbene complex 1 is significantly more reactive with second order rate consts. k'2 that are 2-3 orders of magnitude higher. UV-vis expts. in tandem with cryospray mass spectrometry evidence that the reaction occurs via formation of a hydroxo-iron(III) complex (4) after the initial H atom transfer (HAT). An extensive computational study using a wave function based multireference approach, viz. complete active space SCF (CASSCF) followed by N-electron valence perturbation theory up to second order (NEVPT2), provided insight into the HAT trajectories of 1 and A. Calcd. free energy barriers for 1 reasonably agree with exptl. values. Because the strongly donating equatorial tetracarbene pushes the Fe-dx2-y2 orbital above dz2, 1 features a dramatically large quintet-triplet gap of ∼18 kcal/mol compared to ∼2-3 kcal/mol computed for A. Consequently, the HAT process performed by 1 occurs on the triplet surface only, in contrast to complex A reported to feature two-state-reactivity with contributions from both triplet and quintet states. Despite this, the reactive FeIV(O) units in 1 and A undergo the same electronic-structure changes during HAT. Thus, the unique complex 1 represents a pure "triplet-only" ferryl model.
- 35Mondal, B.; Neese, F.; Bill, E.; Ye, S. Electronic Structure Contributions of Non-Heme Oxo-Iron(V) Complexes to the Reactivity. J. Am. Chem. Soc. 2018, 140, 9531– 9544, DOI: 10.1021/jacs.8b04275Google Scholar35https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC1cXht1yltLjK&md5=08310812b871d3d224dfe279c6dca724Electronic Structure Contributions of Non-Heme Oxo-Iron(V) Complexes to the ReactivityMondal, Bhaskar; Neese, Frank; Bill, Eckhard; Ye, ShengfaJournal of the American Chemical Society (2018), 140 (30), 9531-9544CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)Oxo-iron(V) species have been implicated in the catalytic cycle of the Rieske dioxygenase. Its synthetic analog, [FeV(O)(OC(O)CH3)(PyNMe3)]2+ (1, PyNMe3 = 3,6,9,15-tetraazabicyclo[9.3.1]pentadeca-1(15),11,13-triene-3,6,9- trimethyl), derived from the O-O bond cleavage of its acetylperoxo iron(III) precursor, has been shown exptl. to perform regio- and stereo-selective C-H and C=C bond functionalization. However, its structure-activity relation is poorly understood. Herein we present a detailed electronic-structure and spectroscopic anal. of complex 1 along with well-characterized oxo-iron(V) complexes, [FeV(O)(TAML)]- (2, TAML = tetraamido macrocyclic ligand), [FeV(O)(TMC)(NC(O)CH3)]+ (4, TMC = 1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane) and [FeV(O)(TMC)(NC(OH)CH3)]2+ (4-H+) using wavefunction-based multireference complete active-space SCF calcns. Our results reveal that the x/y anisotropy of the 57Fe A-matrix is not a reliable spectroscopic marker to identify oxo-iron(V) species, and that the drastically different Ax and Ay values detd. for complexes 1, 4 and 4-H+ have distinctive origins compared to complex 2, a genuine oxo-iron(V) species. Complex 1, in fact, has a dominant character of [FeIV(O•••OC(O)CH3)2-•]2+, i.e. an SFe = 1 iron(IV) center antiferromagnetically coupled to an O-O σ* radical, where the O-O bond has not been completely broken. Complex 4 is best described as a triplet ferryl unit that strongly interacts with the trans acetylimidyl radical in an antiferromagnetic fashion, [FeIV(O)(•N=C(O-)CH3)]+. Complex 4-H+ features a similar electronic structure, [FeIV(O)(•N=C(OH)CH3)]2+. Owing to the remaining approx. half σ-bond in the O-O moiety, complex 1 can arrange two electron-accepting orbitals (α σ* O-O and β Fe-dxz) in such a way that both orbitals can simultaneously interact with the doubly occupied electron-donating orbitals (σC-H or πC-C). Hence, complex 1 can promote a concerted yet asynchronous two-electron oxidn. of the C-H and C=C bonds, which nicely explains the stereospecificity obsd. for complex 1 and the related species.
- 36Angeli, C.; Cimiraglia, R.; Evangelisti, S.; Leininger, T.; Malrieu, J.-P. Introduction of n -Electron Valence States for Multireference Perturbation Theory. J. Chem. Phys. 2001, 114, 10252– 10264, DOI: 10.1063/1.1361246Google Scholar36https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD3MXkt1antro%253D&md5=1bd85c0ec505be43e660bfe9820ab455Introduction of n-electron valence states for multireference perturbation theoryAngeli, C.; Cimiraglia, R.; Evangelisti, S.; Leininger, T.; Malrieu, J.-P.Journal of Chemical Physics (2001), 114 (23), 10252-10264CODEN: JCPSA6; ISSN:0021-9606. (American Institute of Physics)The present work presents three second-order perturbative developments from a complete active space (CAS) zero-order wave function, which are strictly additive with respect to mol. dissocn. and intruder state free. They differ by the degree of contraction of the outer-space perturbers. Two types of zero-order Hamiltonians are proposed, both are bielectronic, incorporating the interactions between electrons in the active orbitals, therefore introducing a rational balance between the zero-order wave function and the outer-space. The use of Dyall's Hamiltonian, which puts the active electrons in a fixed core field, and of a partially contracted formalism seems a promising compromise. The formalism is generalizable to multireference spaces which are parts of a CAS. A few test applications of the simplest variant developed in this paper illustrate its potentialities.
- 37Neese, F. The ORCA Program System. WIREs Comput. Mol. Sci. 2012, 2, 73– 78, DOI: 10.1002/wcms.81Google Scholar37https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC38XhvFGls7s%253D&md5=a753e33a6f9a326553295596f5c754e5The ORCA program systemNeese, FrankWiley Interdisciplinary Reviews: Computational Molecular Science (2012), 2 (1), 73-78CODEN: WIRCAH; ISSN:1759-0884. (Wiley-Blackwell)A review. ORCA is a general-purpose quantum chem. program package that features virtually all modern electronic structure methods (d. functional theory, many-body perturbation and coupled cluster theories, and multireference and semiempirical methods). It is designed with the aim of generality, extendibility, efficiency, and user friendliness. Its main field of application is larger mols., transition metal complexes, and their spectroscopic properties. ORCA uses std. Gaussian basis functions and is fully parallelized. The article provides an overview of its current possibilities and documents its efficiency.
- 38Wang, J.; Gao, H.; Yang, L.; Gao, Y. Q. Role of Engineered Iron-Haem Enzyme in Reactivity and Stereoselectivity of Intermolecular Benzylic C–H Bond Amination. ACS Catal. 2020, 10, 5318– 5327, DOI: 10.1021/acscatal.0c00248Google Scholar38https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXmvFSjtrY%253D&md5=739401196e8d8035efee2b018999a633Role of Engineered Iron-haem Enzyme in Reactivity and Stereoselectivity of Intermolecular Benzylic C-H Bond AminationWang, Juping; Gao, Hui; Yang, Lijiang; Gao, Yi QinACS Catalysis (2020), 10 (9), 5318-5327CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)A recent success in which the engineered iron-haem enzymes P411CHA' aminate the intermol. benzylic C-H bond with both high efficiency and stereoselectivity solves a long-standing challenge in synthetic chem. (). The mechanism, reactivity, and stereoselectivity of this reaction were studied by quantum mech. (QM)/mol. mech. (MM) calcns. in this work. To understand better the origin of such an excellent catalytic performance of biocatalyst P411CHA', iron-cofactor FePIX alone for the intermol. C-H bond amination was also theor. investigated as a comparison. The catalytic cycle includes two processes: N2 dissocn. and nitrene transfer. The calcn. results show that P411CHA' enzyme can catalyze intermol. C-H amination with high reactivity and stereoselectivity, whereas the FePIX-catalyzed reaction has much higher barriers for both N2 dissocn. and nitrene transfer compared to P411CHA'. The reason for this dramatic difference in catalytic reactivity between P411CHA' and FePIX is that the former but not the latter allows the formation of precursors B-5PR1 and B-3PR2, which are structurally close to transition states B-3TS1 and B-3TS2 and accelerate N2 dissocn. and nitrene transfer, resp. The mutated residues (A82L A78V F263L) assist the formations of B-5PR1 and B-3PR2 via reducing effectively the size of the haem distal pocket. High stereoselectivity of P411CHA' stems from the steric effect in H-abstraction. A theor. anal. on how para substituent R affects reactivity was also carried out. A strong π-type electron-donating group on the substrate enhances significantly the reactivity of P411CHA'-catalyzed intermol. C-H amination. These results provide valuable information for designing and constructing environmentally friendly biocatalytic C-H amination systems with high reactivity and stereoselectivity.
- 39Huang, H.; Zhao, D.-X.; Yang, Z.-Z. Theoretical Study of Enantioenriched Aminohydroxylation of Styrene Catalyzed by an Engineered Hemoprotein. J. Phys. Org. Chem. 2022, 35, e4280 DOI: 10.1002/poc.4280Google Scholar39https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3MXhvFSgsrbL&md5=176ca25e4b29d251963bec24e577a312Theoretical study of enantioenriched aminohydroxylation of styrene catalyzed by an engineered hemoproteinHuang, Hong; Zhao, Dong-Xia; Yang, Zhong-ZhiJournal of Physical Organic Chemistry (2022), 35 (1), e4280CODEN: JPOCEE; ISSN:0894-3230. (John Wiley & Sons Ltd.)Transforming olefins to chiral amino alcs. is a useful approach to synthesize biol. active natural products and numerous drugs. A recent study has demonstrated a promising and synthetic value of an engineered hemoprotein for catalyzing olefins to chiral amino alcs. with 2500 total turnover nos. and 90% ee. D. functional theory (DFT) calcn. has been used to systematically investigate the detailed mechanisms of the aforementioned process. One electron transfers from Fe atom to HN-nitrene in the iron-nitrene intermediate formation. Subsequently, styrene aziridination, singlet state is characterized by a nonradical, concerted nonsynchronous mechanism, while a radical and stepwise mechanism for triplet. Through hydrolysis reaction forming amino alc. enantiomers, radical intermediate in triplet state without ring-opening process is obviously more feasible than singlet aziridine, where the energy barrier difference between triplet and singlet approaches to 20.00 kcal/mol. Moreover, due to the hydrogen bond effect, the water dimer-assisted hydrolysis reaction is effective to reduce the energy barrier by about 7.00 kcal/mol compared with one water assisted in triplet; however, the energy barrier difference in singlet is unapparent with only 0.18 kcal/mol accompanied with ring-opening process. Further, homol. modeling shows that the reactivity and enantioselectivity can be attributed to the structure of the enzyme active pocket. This study sheds light on the mechanism of engineered hemoprotein-mediated amino alcs. synthesis and shows the development of biol. catalysts.
- 40Das, S. K.; Das, S.; Ghosh, S.; Roy, S.; Pareek, M.; Roy, B.; Sunoj, R. B.; Chattopadhyay, B. An Iron(II)-Based Metalloradical System for Intramolecular Amination of C(sp2)-H and C(sp3)-H Bonds: Synthetic Applications and Mechanistic Studies. Chem. Sci. 2022, 13, 11817– 11828, DOI: 10.1039/D2SC03505GGoogle Scholar40https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB38XisFWqsLjK&md5=bb4b135053d6d32b8174071efdbefa25An iron(II)-based metalloradical system for intramolecular amination of C(sp2)-H and C(sp3)-H bonds: synthetic applications and mechanistic studiesDas, Sandip Kumar; Das, Subrata; Ghosh, Supratim; Roy, Satyajit; Pareek, Monika; Roy, Brindaban; Sunoj, Raghavan B.; Chattopadhyay, BuddhadebChemical Science (2022), 13 (40), 11817-11828CODEN: CSHCCN; ISSN:2041-6520. (Royal Society of Chemistry)A catalytic system for intramol. C(sp2)-H and C(sp3)-H amination of substituted tetrazolopyridines was successfully developed. The amination reactions were developed using an iron-porphyrin based catalytic system. It was demonstrated that the same iron-porphyrin based catalytic system efficiently activates both the C(sp2)-H and C(sp3)-H bonds of the tetrazole as well as azide-featuring substrates with a high level of regioselectivity. The method exhibited an excellent functional group tolerance. The method afforded three different classes of high-value N-heterocyclic scaffolds. A no. of important late-stage C-H aminations were performed to access important classes of mols. Detailed studies (exptl. and computational) showed that both the C(sp2)-H and C(sp3)-H amination reactions involve a metalloradical activation mechanism, which is different from the previously reported electro-cyclization mechanism. Collectively, this study reports the discovery of a new class of metalloradical activation modes using a base metal catalyst that should find wide application in the context of medicinal chem., drug discovery and industrial applications.
- 41Liu, Z.; Qin, Z. Y.; Zhu, L.; Athavale, S. V.; Sengupta, A.; Jia, Z. J.; Garcia-Borràs, M.; Houk, K. N.; Arnold, F. H. An Enzymatic Platform for Primary Amination of 1-Aryl-2-Alkyl Alkynes. J. Am. Chem. Soc. 2022, 144, 80– 85, DOI: 10.1021/jacs.1c11340Google Scholar41https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3MXivVSgu7jP&md5=10f53827154128d185548298619bca88An enzymic platform for primary amination of 1-aryl-2-alkyl alkynesLiu, Zhen; Qin, Zi-Yang; Zhu, Ledong; Athavale, Soumitra V.; Sengupta, Arkajyoti; Jia, Zhi-Jun; Garcia-Borras, Marc; Houk, K. N.; Arnold, Frances H.Journal of the American Chemical Society (2022), 144 (1), 80-85CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)Propargyl amines are versatile synthetic intermediates with numerous applications in the pharmaceutical industry. An attractive strategy for efficient prepn. of these compds. is nitrene propargylic C(sp3)-H insertion. However, achieving this reaction with good chemo-, regio-, and enantioselective control has proven to be challenging. Here, we report an enzymic platform for the enantioselective propargylic amination of alkynes using a hydroxylamine deriv. as the nitrene precursor. Cytochrome P 450 variant PA-G8 catalyzing this transformation was identified after eight rounds of directed evolution. A variety of 1-aryl-2-alkyl alkynes are accepted by PA-G8, including those bearing heteroarom. rings. This biocatalytic process is efficient and selective (up to 2610 total turnover no. (TTN) and 96% ee) and can be performed on preparative scale.
- 42Mai, B. K.; Neris, N. M.; Yang, Y.; Liu, P. C-N Bond Forming Radical Rebound Is the Enantioselectivity-Determining Step in P411-Catalyzed Enantioselective C(sp3)-H Amination: A Combined Computational and Experimental Investigation. J. Am. Chem. Soc. 2022, 144, 11215– 11225, DOI: 10.1021/jacs.2c02283Google Scholar42https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB38Xht12ntrjM&md5=df1cc58ecca20dbcb0e4231dee9d5df0C-N Bond forming radical rebound is the enantioselectivity-determining step in P411-catalyzed enantioselective C(sp3)-H amination: A combined computational and experimental investigationMai, Binh Khanh; Neris, Natalia M.; Yang, Yang; Liu, PengJournal of the American Chemical Society (2022), 144 (25), 11215-11225CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)Engineered metalloenzymes represent promising catalysts for stereoselective C-H functionalization reactions. Recently, P 450 enzymes have been evolved to allow for new-to-nature intramol. C(sp3)-H amination reactions via a nitrene transfer mechanism, giving rise to diamine derivs. with excellent enantiocontrol. To shed light on the origin of enantioselectivity, a combined computational and exptl. study was carried out. Hybrid quantum mechanics/mol. mechanics calcns. were performed to investigate the activation energies and enantioselectivities of both the hydrogen atom transfer (HAT) and the subsequent C-N bond forming radical rebound steps. Contrary to previously hypothesized enantioinduction mechanisms, our calcns. show that the radical rebound step is enantioselectivity-detg., whereas the preceding HAT step is only moderately stereoselective. Furthermore, the selectivity in the initial HAT is ablated by rapid conformational change of the radical intermediate prior to C-N bond formation. This finding is corroborated by our exptl. study using a set of enantiomerically pure, monodeuterated substrates. Furthermore, classical and ab initio mol. dynamics simulations were carried out to investigate the conformational flexibility of the carbon-centered radical intermediate. This key radical species undergoes a facile conformational change in the enzyme active site from the pro-(R) to the pro-(S) configuration, whereas the radical rebound is slower due to the spin-state change and ring strain of the cyclization process, thereby allowing stereoablative C-N bond formation. Together, these studies revealed an underappreciated enantioinduction mechanism in biocatalytic C(sp3)-H functionalizations involving radical intermediates, opening up new avenues for the development of other challenging asym. C(sp3)-H functionalizations.
- 43Goswami, M.; Lyaskovskyy, V.; Domingos, S. R.; Buma, W. J.; Woutersen, S.; Troeppner, O.; Ivanović-Burmazović, I.; Lu, H.; Cui, X.; Zhang, X. P.; Reijerse, E. J.; DeBeer, S.; van Schooneveld, M. M.; Pfaff, F. F.; Ray, K.; de Bruin, B. Characterization of Porphyrin-Co(III)-‘Nitrene Radical’ Species Relevant in Catalytic Nitrene Transfer Reactions. J. Am. Chem. Soc. 2015, 137, 5468– 5479, DOI: 10.1021/jacs.5b01197Google Scholar43https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2MXmtVWqtbY%253D&md5=bffd5d0592296f82e59fa5890ae0e053Characterization of Porphyrin-Co(III)-'Nitrene Radical' Species Relevant in Catalytic Nitrene Transfer ReactionsGoswami, Monalisa; Lyaskovskyy, Volodymyr; Domingos, Sergio R.; Buma, Wybren Jan; Woutersen, Sander; Troeppner, Oliver; Ivanovic-Burmazovic, Ivana; Lu, Hongjian; Cui, Xin; Zhang, X. Peter; Reijerse, Edward J.; DeBeer, Serena; van Schooneveld, Matti M.; Pfaff, Florian Felix; Ray, Kallol; de Bruin, BasJournal of the American Chemical Society (2015), 137 (16), 5468-5479CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)To fully characterize the CoIII-'nitrene radical' species that are proposed as intermediates in nitrene transfer reactions mediated by Co(II) porphyrins, different combinations of Co(II) complexes of porphyrins and nitrene transfer reagents were combined, and the generated species were studied using EPR, UV-visible, IR, VCD, UHR-ESI-MS, and XANES/XAFS measurements. Reactions of Co(II) porphyrins 1P1 (P1 = meso-tetraphenylporphyrin (TPP)) and 1P2 (P2 = 3,5-DitBu-ChenPhyrin) with org. azides 2Ns (NsN3), 2Ts (TsN3), and 2Troc (TrocN3) gave mono-nitrene species 3P1Ns, 3P2Ts, and 3P2Troc, resp., which are best described as [CoIII(por)(NR''•-)] nitrene radicals (imidyl radicals) resulting from single electron transfer from the Co(II) porphyrin to the 'nitrene' moiety (Ns: R'' = -SO2-p-C6H5NO2; Ts: R'' = -SO2C6H6; Troc: R'' = -C(O)OCH2CCl3). Remarkably, the reaction of 1P1 with N-nosyl iminoiodane (PhI = NNs) 4Ns gave a bis-nitrene species 5P1Ns. This species is best described as a triple-radical complex [(por•-)CoIII(NR''•-)2] contg. three ligand-centered unpaired electrons: two nitrene radicals (NR''•-) and one oxidized porphyrin radical (por•-). Thus, the formation of the 2nd nitrene radical involves another intramol. 1-electron transfer to the nitrene moiety, but now from the porphyrin ring instead of the metal center. This bis-nitrene species is obsd. only on reacting 4Ns with 1P1. Reaction of the more bulky 1P2 with 4Ns results again in formation of mainly mono-nitrene species 3P2Ns according to EPR and ESI-MS spectroscopic studies. The mono- and bis-nitrene species were initially expected to be five- and six-coordinate species, resp., but XANES data revealed that both mono- and bis-nitrene species are six-coordinate Oh species. The nature of the 6th ligand bound to Co(III) in the mono-nitrene case remains elusive, but some plausible candidates are NH3, NH2-, NsNH-, and OH-; NsNH- being the most plausible. Conversion of mono-nitrene species 3P1Ns into bis-nitrene species 5P1Ns upon reaction with 4Ns was demonstrated. Solns. contg. 3P1Ns and 5P1Ns proved to be still active in catalytic aziridination of styrene, consistent with their proposed key involvement in nitrene transfer reactions mediated by Co(II) porphyrins.
- 44van Leest, N. P.; de Bruin, B. Revisiting the Electronic Structure of Cobalt Porphyrin Nitrene and Carbene Radicals with NEVPT2-CASSCF Calculations: Doublet versus Quartet Ground States. Inorg. Chem. 2021, 60, 8380– 8387, DOI: 10.1021/acs.inorgchem.1c00910Google Scholar44https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3MXht1aktLfI&md5=a4151a49c33645af3f635af58b1e3a50Revisiting the Electronic Structure of Cobalt Porphyrin Nitrene and Carbene Radicals with NEVPT2-CASSCF Calculations: Doublet versus Quartet Ground Statesvan Leest, Nicolaas P.; de Bruin, BasInorganic Chemistry (2021), 60 (12), 8380-8387CODEN: INOCAJ; ISSN:0020-1669. (American Chemical Society)Cobalt porphyrin complexes are established catalysts for carbene and nitrene radical group-transfer reactions. The key carbene and mono- and bisnitrene radical complexes coordinated to [Co(TPP)] (TPP = tetraphenylporphyrin) have previously been investigated with a variety of exptl. techniques and supporting (single-ref.) d. functional theory (DFT) calcns. that indicated doublet (S = 1/2) ground states for all three species. In this contribution, we revisit their electronic structures with multireference N-electron valence state perturbation theory (NEVPT2)-complete-active-space self-consistent-field (CASSCF) calcns. to investigate possible multireference contributions to the ground-state wave functions. The carbene ([CoIII(TPP)(•CHCO2Et)]) and mononitrene ([CoIII(TPP)(•NNs)]) radical complexes were confirmed to have uncomplicated doublet ground states, although a higher carbene or nitrene radical character and a lower Co-C/N bond order was found in the NEVPT2-CASSCF calcns. Supported by ESR anal. and spin counting, paramagnetic molar susceptibility detn., and NEVPT2-CASSCF calcns., we report that the cobalt porphyrin bisnitrene complex ([CoIII(TPP•)(•NNs)2]) has a quartet (S = 3/2) spin ground state, with a thermally accessible multireference and multideterminant "broken-symmetry" doublet spin excited state. A spin flip on the porphyrin-centered unpaired electron allows for interconversion between the quartet and broken-symmetry doublet spin states, with an approx. 10-fold higher Boltzmann population of the quartet at room temp.
- 45Vardhaman, A. K.; Barman, P.; Kumar, S.; Sastri, C. V.; Kumar, D.; de Visser, S. P. Comparison of the Reactivity of Nonheme Iron(IV)-Oxo versus Iron(IV)-Imido Complexes: Which Is the Better Oxidant?. Angew. Chem., Int. Ed. 2013, 52, 12288– 12292, DOI: 10.1002/anie.201305370Google Scholar45https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC3sXhs1SkurrO&md5=5394f63cbc81f6f4a6c66a2168d06f22Comparison of the Reactivity of Nonheme Iron(IV)-Oxo versus Iron(IV)-Imido Complexes: Which is the Better Oxidant?Vardhaman, Anil Kumar; Barman, Prasenjit; Kumar, Suresh; Sastri, Chivukula V.; Kumar, Devesh; de Visser, Sam P.Angewandte Chemie, International Edition (2013), 52 (47), 12288-12292CODEN: ACIEF5; ISSN:1433-7851. (Wiley-VCH Verlag GmbH & Co. KGaA)A comparative study on the reactivity patterns of nonheme iron(IV)-oxo vs. iron(IV)-imido is reported. Owing to the larger electron affinity of the oxidant, iron(IV)-imido is a better oxidant of sulfoxidn. reactions than iron(IV)-oxo. By contrast, these trends are reversed for stepwise one-electron transfer reactions, such as hydrogen atom abstraction reactions where stereochem. interactions upon substrate approach det. the relative rate consts.
- 46Mukherjee, G.; Reinhard, F. G. C.; Bagha, U. K.; Sastri, C. V.; de Visser, S. P. Sluggish Reactivity by a Nonheme Iron(IV)-Tosylimido Complex as Compared to Its Oxo Analogue. Dalt. Trans. 2020, 49, 5921– 5931, DOI: 10.1039/D0DT00018CGoogle ScholarThere is no corresponding record for this reference.
- 47Coin, G.; Patra, R.; Rana, S.; Biswas, J. P.; Dubourdeaux, P.; Clémancey, M.; De Visser, S. P.; Maiti, D.; Maldivi, P.; Latour, J. M. Fe-Catalyzed Aziridination Is Governed by the Electron Affinity of the Active Imido-Iron Species. ACS Catal. 2020, 10, 10010– 10020, DOI: 10.1021/acscatal.0c01427Google Scholar47https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXhsFOjur7I&md5=ab4928c1884e438026da1536bdf96d98Fe-Catalyzed Aziridination Is Governed by the Electron Affinity of the Active Imido-Iron SpeciesCoin, Guillaume; Patra, Ranjan; Rana, Sujoy; Biswas, Jyoti Prasad; Dubourdeaux, Patrick; Clemancey, Martin; de Visser, Sam P.; Maiti, Debabrata; Maldivi, Pascale; Latour, Jean-MarcACS Catalysis (2020), 10 (17), 10010-10020CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)Aziridination has very recently been found to be catalyzed by heme and nonheme Fe enzymes, opening the way to biotechnol. developments. However, its mechanism is not fully understood owing to the contrasting behaviors exhibited by several Fe catalysts. Indeed, whereas a few Fe catalysts exhibit an activity dominated by inductive effects, the activity of others reveal significant and even dominant radical delocalization. Therefore, no clear and general rationale of aziridination has yet emerged. Elaborating on our previous studies, we anticipated that replacing two pyridines of a pentanitrogen ligand by two quinolines would enhance the electron affinity of the corresponding imido FeIV active species and hence its aziridination activity. This proved to be the case, and Hammett correlations indicate an electrophilic active species and dominant inductive effects. The calcd. reaction profile points to a two-step mechanism with the formation of the first C-N bond being rate-detg. and involving a strong charge transfer in the transition state. The aziridine ring closure in the second step is almost barrierless. A clear correlation of aziridination yields with calcd. EA for Fe-catalysts indicate that the dependence of aziridination efficacy on EA of active species is a quite general feature. To generalize this anal., we reinvestigated a catalyst exhibiting a radical delocalization dominance. Indeed, a similar two-step mechanism was found, which involves a partial charge transfer in the C-N bond formation as all other cases. The interesting point is that owing to the strong steric hindrance of the catalyst substitution, the aziridine ring closure of the intermediate benzylic radical (second step) becomes rate-detg., thus explaining the dominance of the radical delocalization effect. Eventually, a general aziridination two-step mechanism has been rationalized, and EA thus appears as the key descriptor for Fe-based catalytic aziridination that can be used in a predictable way.
- 48Shaik, S.; Chen, H.; Janardanan, D. Exchange-Enhanced Reactivity in Bond Activation by Metal–Oxo Enzymes and Synthetic Reagents. Nat. Chem. 2011, 3, 19– 27, DOI: 10.1038/nchem.943Google Scholar48https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A280%3ADC%252BC3M%252Fks1eksQ%253D%253D&md5=febe609e3dcc95a3ed35c27ed0ed291bExchange-enhanced reactivity in bond activation by metal-oxo enzymes and synthetic reagentsShaik Sason; Chen Hui; Janardanan DeepaNature chemistry (2011), 3 (1), 19-27 ISSN:.Reactivity principles based on orbital overlap and bonding/antibonding interactions are well established to describe the reactivity of organic species, and atomic structures are typically predicted by Hund's rules to have maximum single-electron occupancy of degenerate orbitals in the ground state. Here, we extend the role of exchange to transition states and discuss how, for reactions and kinetics of bioinorganic species, the analogue of Hund's rules is exchange-controlled reactivity. Pathways that increase the number of unpaired and spin-identical electrons on a metal centre will be favoured by exchange stabilization. Such exchange-enhanced reactivity endows transition states with a stereochemistry different from that observed in cases that are not exchange-enhanced, and is in good agreement with the reactivity observed for iron-based enzymes and synthetic analogues. We discuss the interplay between orbital- and exchange-controlled principles, and how this depends on the identity of the transition metal, its oxidation number and its coordination sphere.
- 49Wong, S. D.; Bell, C. B.; Liu, L. V.; Kwak, Y.; England, J.; Alp, E. E.; Zhao, J.; Que, L.; Solomon, E. I. Nuclear Resonance Vibrational Spectroscopy on the FeIV = O S = 2 Non-Heme Site in TMG 3 Tren: Experimentally Calibrated Insights into Reactivity. Angew. Chem., Int. Ed. 2011, 50, 3215– 3218, DOI: 10.1002/anie.201007692Google Scholar49https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC3MXjsFyqsr0%253D&md5=7bb2269957996f9fb8a6bd0991f82030Nuclear Resonance Vibrational Spectroscopy on FeIV=O S=2 non-heme site in TMG3tren: experimentally calibrated insights into reactivityWong, Shaun D.; Bell, Caleb B., III; Liu, Lei V.; Kwak, Yeonju; England, Jason; Alp, E. Ercan; Zhao, Jiyong; Que, Lawrence, Jr.; Solomon, Edward I.Angewandte Chemie, International Edition (2011), 50 (14), 3215-3218, S3215/1-S3215/8CODEN: ACIEF5; ISSN:1433-7851. (Wiley-VCH Verlag GmbH & Co. KGaA)[(TMG3tren)FeIV=O] (1) has an FeV=O unit ligated by TMG3tren in a C3, trigonal bipyramidal geometry, and an S = 2 ground state replicating that of enzyme intermediates.TMG3tren = 1,1,1-tris{2-[N2-(1,1,3,3-tetramethylguanidino)]ethyl}amine. We utilize nuclear resonance vibrational spectroscopy (NRVS) to obtain ground-state vibrational data on 1. DFT optimizations of 1 using both the BP86 and B3LYP functionals gave structures in good agreement with X-ray crystallog. and EXAFS results.
- 50Hirao, H.; Kumar, D.; Que, L.; Shaik, S. Two-State Reactivity in Alkane Hydroxylation by Non-Heme Iron–Oxo Complexes. J. Am. Chem. Soc. 2006, 128, 8590– 8606, DOI: 10.1021/ja061609oGoogle Scholar50https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD28XlvFemsrs%253D&md5=f062159a5fbeddd390452052096c9929Two-State Reactivity in Alkane Hydroxylation by Non-Heme Iron-Oxo ComplexesHirao, Hajime; Kumar, Devesh; Que, Lawrence, Jr.; Shaik, SasonJournal of the American Chemical Society (2006), 128 (26), 8590-8606CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)D. functional theory is used to explore the mechanisms of alkane hydroxylation for four synthetic non-heme iron(IV)-oxo complexes with three target substrates (Kaizer, J.; Klinker, E. J.; Oh, N. Y.; Rohde; J.-U.; Song, W. J.; Stubna, A.; Kim, J.; Muenck, E.; Nam, W.; Que, L. Jr. J. Am. Chem. Soc. 2004, 126, 472-473; Rohde, J.-U.; Que, L. Jr. Angew. Chem. Int. Ed. 2005, 44, 2255-2258.). The iron-oxo reagents possess triplet ground states and low-lying quintet excited states. The set of exptl. and theor. reactivity trends can be understood if the reactions proceed on the two spin states, namely two-state reactivity (TSR); an appropriate new model is presented. The TSR model makes testable predictions: (a) If crossing to the quintet state occurs, the hydroxylation will be effectively concerted; however, if the process transpires only on the triplet surface, stepwise hydroxylation will occur, and side products derived from radical intermediates would be obsd. (e.g., loss of stereochem.). (b) In cases of crossing en route to the quintet transition state, one expects kinetic isotope effects (KIEs) typical of tunneling. (c) In situations where the two surfaces contribute to the rate, one expects intermediate KIEs and radical scrambling patterns that reflect the two processes. (d) Solvent effects on these reactions are expected to be very large.
- 51Louwerse, M. J.; Jan Baerends, E. Oxidative Properties of FeO2+: Electronic Structure and Solvation Effects. Phys. Chem. Chem. Phys. 2007, 9, 156– 166, DOI: 10.1039/B613182DGoogle Scholar51https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD28Xht12qtb3L&md5=e28d4bf268777a3a01095cacdbb2c846Oxidative properties of FeO2+: electronic structure and solvation effectsLouwerse, Manuel J.; Baerends, Evert JanPhysical Chemistry Chemical Physics (2007), 9 (1), 156-166CODEN: PPCPFQ; ISSN:1463-9076. (Royal Society of Chemistry)An electronic structure anal. is provided of the action of solvated FeO2+, [FeO(H2O)5]2+, as a hydroxylation catalyst. It is emphasized that the oxo end of FeO2+ does not form hydrogen bonds (as electron donor and H-bond acceptor) with H-bond donors nor with aliph. C-H bonds, but it activates C-H bonds as an electron acceptor. It is extremely electrophilic, to the extent that it can activate even such poor electron donors as aliph. C-H bonds, the C-H bond orbital acting as electron donor in a charge transfer type of interaction. Lower lying O-H bonding orbitals are less easily activated. The primary electron accepting orbital in a water environment is the 3σ*α orbital, an antibonding combination of Fe-3dz2 and O-2pz, which is very low-lying relative to the π*α compared with, for example, the σ* orbital in O2 relative to its π*. This is ascribed to relatively small Fe-3dz2 with O-2pz overlap, due to the nodal structure of the 3dz2.The H-abstraction barrier is very low in the gas phase, but it is considerably enhanced in water solvent. This is shown to be due to strong screening effects of the dielec. medium, leading to relative destabilization of the levels of the charged [FeO(H2O)5]2+ species compared to those of the neutral substrate mols., making it a less effective electron acceptor. The solvent directly affects the orbital interactions responsible for the catalytic reaction.
- 52Hirao, H.; Que, L.; Nam, W.; Shaik, S. A Two-State Reactivity Rationale for Counterintuitive Axial Ligand Effects on the C-H Activation Reactivity of Nonheme FeIV = O Oxidants. Chem. Eur. J. 2008, 14, 1740– 1756, DOI: 10.1002/chem.200701739Google Scholar52https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD1cXkvVKns78%253D&md5=238da9fec5e5c88e8c5fc377e2124c61A two-state reactivity rationale for counterintuitive axial ligand effects on the C-H activation reactivity of nonheme FeIV=O oxidantsHirao, Hajime; Que, Lawrence, Jr.; Nam, Wonwoo; Shaik, SasonChemistry - A European Journal (2008), 14 (6), 1740-1756CODEN: CEUJED; ISSN:0947-6539. (Wiley-VCH Verlag GmbH & Co. KGaA)This paper addresses the observation of counterintuitive reactivity patterns of iron-oxo reagents, TMC(L)FeO2+.1+; L = CH3CN, CF3CO2-, N3-, and SR-, in O-transfer to phosphines vs. H-abstraction from, for example, 1,4-cyclohexadiene. Expts. show that O-transfer reactivity correlates with the electrophilicity of the oxidant, but H-abstraction reactivity follows an opposite trend. DFT/B3LYP calcns. reveal that two-state reactivity (TSR) serves as a compelling rationale for these trends, whereby all reactions involve two adjacent spin-states of the iron(IV)-oxo species, triplet and quintet. The ground state triplet surface has high barriers, whereas the excited state quintet surface features lower ones. The barriers, on any single surface, are found to increase as the electrophilicity of TMC(L)FeO2+.1+ decreases. Thus, the counterintuitive behavior of the H-abstraction reactions cannot be explained by considering the reactivity of only a single spin state but can be rationalized by a TSR model in which the reactions proceed on the two surfaces. Two TSR models are outlined: one is traditional involving a variable transmission coeff. for crossover from triplet to quintet, followed by quintet-state reactions; the other considers the net barrier as a blend of the triplet and quintet barriers. The blending coeff. (x), which ests. the triplet participation, increases as the quintet-triplet energy gap of the TMC(L)FeO2+.1+ reagent increases, in the following order of L: CH3CN > CF3CO2- > N3- > SR-. The calcd. barriers predict the dichotomic exptl. trends and the counterintuitive behavior of the H-abstraction series. The TSR approaches make a variety of testable predictions.
- 53Janardanan, D.; Wang, Y.; Schyman, P.; Que, L.; Shaik, S. The Fundamental Role of Exchange-Enhanced Reactivity in C-H Activation by S = 2 Oxo Iron(IV) Complexes. Angew. Chem., Int. Ed. 2010, 49, 3342– 3345, DOI: 10.1002/anie.201000004Google Scholar53https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC3cXlt1Glsbc%253D&md5=31d193552454472eeaf4137c6fb2c0c9The fundamental role of exchange-enhanced reactivity in C-H activation by S = 2 oxo iron(IV) complexesJanardanan, Deepa; Wang, Yong; Schyman, Patric; Que, Lawrence, Jr.; Shaik, SasonAngewandte Chemie, International Edition (2010), 49 (19), 3342-3345, S3342/1-S3342/51CODEN: ACIEF5; ISSN:1433-7851. (Wiley-VCH Verlag GmbH & Co. KGaA)C-H-Activation of 1,4-cyclohexadiene by nitrogen tri- and tetradentate iron(IV) oxo complexes was explored by DFT calcn. of potential energy surface of allylic hydrogen cleavage to form cyclohexadienyl radical and hydroxyiron(III) complex. 1,4-Cyclohexadiene undergoes hydrogen abstraction in reaction with triimine complex [(L1-N4)FeO]2+ [1-t, L1-N4 = tris(N-methyleneaminoethyl)amine], triguanidine complex [(L2-N4)FeO]2+ [1, L2-N4 = tris[N-bis(dimethylamino)methyleneaminoethyl]amine], tetrapyridine complex [(L3-N5)FeO]2+ [2, L3-N5 = bis(2-pyridinylmethyl)(di-2-pyridinylmethyl)amine], macrocyclic [(L4-N4)(MeCN)FeO]2+ [3, L4-N4 = 1,5,8,12-tetramethyl-1,5,8,12-tetraazatetradecane] and neutral scorpionate [(TpPh)FeO(O2CPh)] [4, TpPh = hydrotris(3,5-diphenylpyrazolyl)borate], giving 2,5-cyclohexadienyl radical and corresponding iron(III) complexes [(Ln-Nm)(L)Fe(OH)]k+ (L absent or MeCN, K = 2, 0). The reaction rate strongly depends on the spin state of Fe(IV), having favorable activation barriers for quintet complexes (S = 2). Whereas the quintet state is the ground state for 1-t, 1 and 4, complexes 2 and 3 exist in triplet ground state. For 2 and 3, hydrogen abstraction from the quintet state is almost barrier-free; the low reactivity of these species is accounted for low probability of the spin crossover and entropic effects of assocn. Low reactivity of 1 is a result of high activation barriers both for triplet and quintet states. Triplet and quintet states for 4 are very near in energy, the quintet state features monodentate benzoate, which facilitates the reaction. The overall reactivity is changed in a series of 4»2≥1>3.
Cited By
Smart citations by scite.ai include citation statements extracted from the full text of the citing article. The number of the statements may be higher than the number of citations provided by ACS Publications if one paper cites another multiple times or lower if scite has not yet processed some of the citing articles.
This article is cited by 9 publications.
- Kyeongdeok Seo, Yu Zhang, Tuan Anh Trinh, Jed Kim, Lihan Qi, Ilia A. Guzei, Joseph R. Clark, Peng Liu, Jennifer M. Schomaker. Mechanistic and Computational Insights into Asymmetric Intramolecular Iron-Catalyzed Nitrene Transfer into Benzylic C–H Bonds. ACS Catalysis 2025, 15
(5)
, 3789-3798. https://doi.org/10.1021/acscatal.5c00222
- Hanqing Xie, Kaifeng Liu, Zhengqiang Li, Zhi Wang, Chunyu Wang, Fengxi Li, Weiwei Han, Lei Wang. Machine-Learning-Aided Engineering Hemoglobin as Carbene Transferase for Catalyzing Enantioselective Olefin Cyclopropanation. JACS Au 2024, 4
(12)
, 4957-4967. https://doi.org/10.1021/jacsau.4c01045
- Wei-Nan Xu, Ya-Dong Gao, Ping Su, Luqi Huang, Zhao-Lin He, Li-Cheng Yang. Progress in Enzyme-Catalyzed C(sp3)–H Amination. ACS Catalysis 2024, 14
(18)
, 14139-14160. https://doi.org/10.1021/acscatal.4c04947
- Gaurab Ganguly, Zdenek Havlas, Josef Michl. Ab Initio Calculation of UV–vis Absorption of Parent Mg, Fe, Co, Ni, Cu, and Zn Metalloporphyrins. Inorganic Chemistry 2024, 63
(22)
, 10127-10142. https://doi.org/10.1021/acs.inorgchem.3c04460
- Yang Zeng, Xue Jiang, Yujun Si, Lijun Yang. Mechanistic insights into axial ligation effects on electron transfer and selective C−H activation catalyzed by iron-oxo analogues. Computational and Theoretical Chemistry 2025, 1247 , 115146. https://doi.org/10.1016/j.comptc.2025.115146
- Ziqian Bai, Zenghui Wei, Shiyang Zhu, Gang He, Hao Wang, Gong Chen. Nitrene-mediated glycosylation with thioglycoside donors under metal catalysis. Science Advances 2025, 11
(8)
https://doi.org/10.1126/sciadv.adu7747
- Mayank Mahajan, Ushma Gangwar, Bhaskar Mondal. The Role of a Redox‐Active Ligand in Cu(II)‐Nitrenoid Formation and Its Aziridination Reactivity. ChemCatChem 2024, https://doi.org/10.1002/cctc.202401479
- Dario Possenti, Giorgio Olivo. Homogeneous Iron Catalyzed C−H Amination. ChemCatChem 2024, 16
(18)
https://doi.org/10.1002/cctc.202400353
- Yu Wang, Kai Guo, Weijie Chen, Yu Du, Yan Zhao, Pengfei Yuan, Gan Qu. Peripheral group-induced spin-state switch of metal macrocyclic molecule for enhanced redox kinetics in lithium-sulfur batteries. Chemical Engineering Journal 2024, 491 , 151990. https://doi.org/10.1016/j.cej.2024.151990
Article Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.
Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.
The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated.
Recommended Articles
Abstract
Scheme 1
Scheme 1. Biocatalytic Nitrene-Transfer Reaction by Iron-Porphyrin CofactoraaTop panel: nitrene transfer reactions catalyzed by cytochrome- and myoglobin-based enzymes. Bottom panel: active sites of Cyt-P450, Cyt-P411, Cyt-c, and myoglobin (Mb) enzymes with “axial” O–Ser, S–Cys, and N–His coordination, respectively.
Scheme 2
Scheme 2. (a) Fe(II)-Porphyrin Model Complexes Mimicking the Axially Coordinated Heme Unit of Cytochrome P411 (1,2), Cytochrome P450 (3,4), Cytochrome c and Myoglobin (5), and No “Axial” Coordination (6); (b) Proposed Mechanism for Intramolecular C–H Amination of Sulfamoyl Azide (Sul) to Cyclic Sulfamide Catalyzed by Fe–Porphyrin ComplexesFigure 1
Figure 1. Electronic structure of Fe-porphyrin-nitrene derived from 1 (1-Sul, left) and 2 (2-Sul, right) showcasing natural orbitals, occupation numbers in parentheses, atomic orbital contributions, dominant electronic configuration, spin density, and spin population derived from the CASSCF(10,13)/def2-TZVPP level of theory. The orbitals are schematically arranged based on their occupation numbers, and the metal 4d orbitals are omitted for clarity. The chemical structures of 1-Sul and 2-Sul are presented with the Fe–N bond distance in Å.
Figure 2
Figure 2. Evolution of the Fe–N π electronic structure with the “axial” Fe–O distance in 1-Sul obtained at the CASSCF(10,13)/NEVPT2 level of theory.
Figure 3
Figure 3. Key orbitals describing the Fe–N π-interaction in Fe-porphyrin-nitrene species derived from complexes 1–6 and sulfamoyl azide, 1-Sul, 2-Sul, 3-Sul, 4-Sul, 5-Sul, and 6-Sul. Left panel: chemical structure and Fe–N distance in Å. Middle panel: key π-natural orbitals along with the atomic contributions from Fe and N. Right panel: spin density and spin population obtained at the CASSCF(10,13) level of theory.
Figure 4
Figure 4. Reaction free energy (ΔG) profile for the hydrogen atom transfer (HAT) reaction exhibited by 1-Sul (a) and 2-Sul (b) in three different spin states. Results were obtained at the DFT-B3LYP/def2-TZVP/SMD (chlorobenzene) level of theory.
Figure 5
Figure 5. Triplet vs quintet hydrogen atom transfer (HAT) free energy profiles for 1-Sul, 2-Sul, 3-Sul, 4-Sul, and 6-Sul. The red circles represent the calculated minimum energy crossing point (MECP) position between triplet and quintet spin states. Results were obtained at the DFT-B3LYP/def2-TZVP/SMD (chlorobenzene) level of theory.
Figure 6
Figure 6. d–d transition energies obtained at the CASSCF(10,13)/NEVPT2 level of theory and schematic orbital-splitting diagram for species 1-Sul, 2-Sul, 3-Sul, 4-Sul, and 6-Sul.
References
This article references 53 other publications.
- 1Dunham, N. P.; Arnold, F. H. Nature’s Machinery, Repurposed: Expanding the Repertoire of Iron-Dependent Oxygenases. ACS Catal. 2020, 10, 12239– 12255, DOI: 10.1021/acscatal.0c036061https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXhvFaqs7fL&md5=007b291f3cab1ae5ddce677e44d64861Nature's machinery, repurposed: Expanding the repertoire of iron-dependent oxygenasesDunham, Noah P.; Arnold, Frances H.ACS Catalysis (2020), 10 (20), 12239-12255CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)A review. Iron is an esp. important redox-active cofactor in biol. because of its ability to mediate reactions with atm. O2. Iron-dependent oxygenases exploit this earth-abundant transition metal for the insertion of oxygen atoms into org. compds. Throughout the astounding diversity of transformations catalyzed by these enzymes, the protein framework directs reactive intermediates toward the precise formation of products, which, in many cases, necessitates the cleavage of strong C-H bonds. In recent years, members of several iron-dependent oxygenase families have been engineered for new-to-nature transformations that offer advantages over conventional synthetic methods. In this Perspective, we first explore what is known about the reactivity of heme-dependent cytochrome P 450 oxygenases and nonheme iron-dependent oxygenases bearing the 2-His-1-carboxylate facial triad by reviewing mechanistic studies with an emphasis on how the protein scaffold maximizes the catalytic potential of the iron-heme and iron cofactors. We then review how these cofactors have been repurposed for abiol. transformations by engineering the protein frameworks of these enzymes. Finally, we discuss contemporary challenges assocd. with engineering these platforms and comment on their roles in biocatalysis moving forward.
- 2Yang, Y.; Arnold, F. H. Navigating the Unnatural Reaction Space: Directed Evolution of Heme Proteins for Selective Carbene and Nitrene Transfer. Acc. Chem. Res. 2021, 54, 1209– 1225, DOI: 10.1021/acs.accounts.0c005912https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3MXhvVWls78%253D&md5=9b6091b0a3ff069ea4bf61137ab123a4Navigating the Unnatural Reaction Space: Directed Evolution of Heme Proteins for Selective Carbene and Nitrene TransferYang, Yang; Arnold, Frances H.Accounts of Chemical Research (2021), 54 (5), 1209-1225CODEN: ACHRE4; ISSN:0001-4842. (American Chemical Society)A review. Conspectus: Despite the astonishing diversity of naturally occurring biocatalytic processes, enzymes do not catalyze many of the transformations favored by synthetic chemists. Either nature does not care about the specific products, or if she does, she has adopted a different synthetic strategy. In many cases, the appropriate reagents used by synthetic chemists are not readily accessible to biol. systems. Here, the authors' efforts to expand the catalytic repertoire of enzymes to encompass powerful reactions previously known only in small-mol. catalysis: formation and transfer of reactive carbene and nitrene intermediates leading to a broad range of products, including products with bonds not known in biol. are discussed. In light of the structural similarity of iron carbene (Fe:C(R1)(R2)) and iron nitrene (Fe = NR) to the iron oxo (Fe = O) intermediate involved in cytochrome P 450-catalyzed oxidn., the authors used synthetic carbene and nitrene precursors that biol. systems have not encountered and repurposed P450s to catalyze reactions that are not known in the natural world. The resulting protein catalysts are fully genetically encoded and function in intact microbial cells or cell-free lysates, where their performance can be improved and optimized by directed evolution. By leveraging the catalytic promiscuity of P 450 enzymes, the authors evolved a range of carbene and nitrene transferases exhibiting excellent activity toward these new-to-nature reactions. Since the authors' initial report in 2012, a no. of other heme proteins including myoglobins, protoglobins, and cytochromes c also were found and engineered to promote unnatural carbene and nitrene transfer. Due to the altered active-site environments, these heme proteins often displayed complementary activities and selectivities to P450s. Using wild-type and engineered heme proteins, the authors and others have described a range of selective carbene transfer reactions, including cyclopropanation, cyclopropenation, Si-H insertion, B-H insertion, and C-H insertion. Similarly, a variety of asym. nitrene transfer processes including aziridination, sulfide imidation, C-H amidation, and, most recently, C-H amination were demonstrated. The scopes of these biocatalytic carbene and nitrene transfer reactions are often complementary to the state-of-the-art processes based on small-mol. transition-metal catalysts, making engineered biocatalysts a valuable addn. to the synthetic chemist's toolbox. Moreover, enabled by the exquisite regio- and stereocontrol imposed by the enzyme catalyst, this biocatalytic platform provides an exciting opportunity to address challenging problems in modern synthetic chem. and selective catalysis, including ones that have eluded synthetic chemists for decades.
- 3Chen, K.; Arnold, F. H. Engineering New Catalytic Activities in Enzymes. Nat. Catal. 2020, 3, 203– 213, DOI: 10.1038/s41929-019-0385-53https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXjtFylsL4%253D&md5=650897e5fffbe806cb8358ef4c725313Engineering new catalytic activities in enzymesChen, Kai; Arnold, Frances H.Nature Catalysis (2020), 3 (3), 203-213CODEN: NCAACP; ISSN:2520-1158. (Nature Research)A review. Abstr.: The efficiency, selectivity and sustainability benefits offered by enzymes are enticing chemists to consider biocatalytic transformations to complement or even supplant more traditional synthetic routes. Increasing demands for efficient and versatile synthetic methods, combined with powerful new discovery and engineering tools, has prompted innovations in biocatalysis, esp. the development of new enzymes for precise transformations or 'mol. editing'. As a result, the past decade has witnessed an impressive expansion of the catalytic repertoire of enzymes to include new and useful transformations not known (or relevant) in the biol. world. In this Review we illustrate various ways in which researchers have approached using the catalytic machineries of enzymes for new-to-nature transformations. These efforts have identified genetically encoded catalysts that can be tuned and diversified by engineering the protein sequence, particularly by directed evolution. Discovery and improvement of these new enzyme activities is opening a floodgate that connects the chem. of the biol. world to that invented by humans over the past 100 years.
- 4Singh, R.; Mukherjee, A. Metalloporphyrin Catalyzed C-H Amination. ACS Catal. 2019, 9, 3604– 3617, DOI: 10.1021/acscatal.9b000094https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC1MXkvVyntLo%253D&md5=6787a6e495bcc2b2326516b667792d6fMetalloporphyrin Catalyzed C-H AminationSingh, Ritesh; Mukherjee, AnirbanACS Catalysis (2019), 9 (4), 3604-3617CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)A review discusses the use of metalloporphyrins in org. synthesis for the amination, azidation, and imination of C-H bonds to yield amines, azides, and imines; the use of metalloporphyrin-contg. enzymes for regioselective or enantioselective amination reactions and the mechanisms of selected reactions are also discussed.
- 5Hyster, T. K.; Farwell, C. C.; Buller, A. R.; McIntosh, J. A.; Arnold, F. H. Enzyme-Controlled Nitrogen-Atom Transfer Enables Regiodivergent C-H Amination. J. Am. Chem. Soc. 2014, 136, 15505– 15508, DOI: 10.1021/ja509308v5https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2cXhslOhu7vL&md5=64df2e3d111a1d0baeddb8248e056a55Enzyme-Controlled Nitrogen-Atom Transfer Enables Regiodivergent C-H AminationHyster, Todd K.; Farwell, Christopher C.; Buller, Andrew R.; McIntosh, John A.; Arnold, Frances H.Journal of the American Chemical Society (2014), 136 (44), 15505-15508CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)We recently demonstrated that variants of cytochrome P 450BM3 (CYP102A1) catalyze the insertion of nitrogen species into benzylic C-H bonds to form new C-N bonds. An outstanding challenge in the field of C-H amination is catalyst-controlled regioselectivity. Here, we report two engineered variants of P 450BM3 that provide divergent regioselectivity for C-H amination - one favoring amination of benzylic C-H bonds and the other favoring homo-benzylic C-H bonds. The two variants provide nearly identical kinetic isotope effect values (2.8-3.0), suggesting that C-H abstraction is rate-limiting. The 2.66-Å crystal structure of the most active enzyme suggests that the engineered active site can preorganize the substrate for reactivity. We hypothesize that the enzyme controls regioselectivity through localization of a single C-H bond close to the iron nitrenoid.
- 6Singh, R.; Bordeaux, M.; Fasan, R. P450-Catalyzed Intramolecular Sp3 C–H Amination with Arylsulfonyl Azide Substrates. ACS Catal. 2014, 4, 546– 552, DOI: 10.1021/cs400893n6https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2cXjtFantg%253D%253D&md5=1bac46ddee013c69af256110e433f98bP450-Catalyzed Intramolecular sp3 C-H Amination with Arylsulfonyl Azide SubstratesSingh, Ritesh; Bordeaux, Melanie; Fasan, RudiACS Catalysis (2014), 4 (2), 546-552CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)The direct amination of aliph. C-H bonds represents a most valuable transformation in org. chem. While a no. of transition-metal-based catalysts have been developed and investigated for this purpose, the possibility to execute this transformation with biol. catalysts has remained largely unexplored. Here, we report that cytochrome P 450 enzymes can serve as efficient catalysts for mediating intramol. benzylic C-H amination reactions in a variety of arylsulfonyl azide compds. Under optimized conditions, the P 450 catalysts were found to support up to 390 total turnovers leading to the formation of the desired sultam products with excellent regioselectivity. In addn., the chiral environment provided by the enzyme active site allowed for the reaction to proceed in a stereo- and enantioselective manner. The C-H amination activity, substrate profile, and enantio/stereoselectivity of these catalysts could be modulated by utilizing enzyme variants with engineered active sites.
- 7Steck, V.; Kolev, J. N.; Ren, X.; Fasan, R. Mechanism-Guided Design and Discovery of Efficient Cytochrome P450-Derived C-H Amination Biocatalysts. J. Am. Chem. Soc. 2020, 142, 10343– 10357, DOI: 10.1021/jacs.9b128597https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXpsVCqsrk%253D&md5=718c44b96ae5e592ed49eecf0ee4f538Mechanism-Guided Design and Discovery of Efficient Cytochrome P450-Derived C-H Amination BiocatalystsSteck, Viktoria; Kolev, Joshua N.; Ren, Xinkun; Fasan, RudiJournal of the American Chemical Society (2020), 142 (23), 10343-10357CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)Cytochromes P 450 have been recently identified as a promising class of biocatalysts for mediating C-H aminations via nitrene transfer, a valuable transformation for forging new C-N bonds. The catalytic efficiency of P450s in these non-native transformations is however significantly inferior to that exhibited by these enzymes in their native monooxygenase function. Using a mechanism-guided strategy, we report here the rational design of a series of P 450BM3-based variants with dramatically enhanced C-H amination activity acquired through disruption of the native proton relay network and other highly conserved structural elements within this class of enzymes. This approach further guided the identification of XplA and BezE, two "atypical" natural P450s implicated in the degrdn. of a man-made explosive and in benzastatins biosynthesis, resp., as very efficient C-H aminases. Both XplA and BezE could be engineered to further improve their C-H amination reactivity, which demonstrates their evolvability for abiol. reactions. These engineered and natural P 450 catalysts can promote the intramol. C-H amination of arylsulfonyl azides with over 10 000-14 000 catalytic turnovers, ranking among the most efficient nitrene transfer biocatalysts reported to date. Mechanistic and structure-reactivity studies provide insights into the origin of the C-H amination reactivity enhancement and highlight the divergent structural requirements inherent to supporting C-H amination vs. C-H monooxygenation reactivity within this class of enzymes. Overall, this work provides new promising scaffolds for the development of nitrene transferases and demonstrates the value of mechanism-driven rational design as a strategy for improving the catalytic efficiency of metalloenzymes in the context of abiol. transformations.
- 8Conradie, J.; Ghosh, A. Electronic Structure of an Iron-Porphyrin–Nitrene Complex. Inorg. Chem. 2010, 49, 243– 248, DOI: 10.1021/ic901897w8https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD1MXhsFaks7vL&md5=05a4c04b0d6aae0ad42388b6b7747e45Electronic Structure of an Iron-Porphyrin-Nitrene ComplexConradie, Jeanet; Ghosh, AbhikInorganic Chemistry (2010), 49 (1), 243-248CODEN: INOCAJ; ISSN:0020-1669. (American Chemical Society)Middle and late transition metal imido complexes (which may also be viewed as metal-nitrene adducts) are rather rare, esp. for square-pyramidal and octahedral coordination geometries. However, an iron(II) porphyrin aminonitrene adduct, denoted here as Fe(Por)(NN), has been known for almost a quarter of a century. Unlike the corresponding S = 1 oxene and S = 0 carbene adducts, Fe(Por)(NN) exhibits an S = 2 ground state. DFT-GGA calcns. reported herein provide a MO description of this unusual species as well as a rationale for its S = 2 ground state. The electronic configuration of Fe(Por)(NN) may be described as dπ2dxy1dz21dx2-y21dπ'1, where the z direction corresponds to the Fe-NN axis. The stability and double occupancy of one of the dπ orbitals may be attributed to a π-backbonding interaction with the N-N π* orbital. The weak σ-donor ability of the aminonitrene ligand results in a relatively low-energy dz2 orbital and an overall d orbital splitting pattern that engenders a high-spin ground state.
- 9Li, X.; Dong, L.; Liu, Y. Theoretical Study of Iron Porphyrin Nitrene: Formation Mechanism, Electronic Nature, and Intermolecular C-H Amination. Inorg. Chem. 2020, 59, 1622– 1632, DOI: 10.1021/acs.inorgchem.9b022169https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXmtlehtQ%253D%253D&md5=e1a345a397cbf79cf3cb36acab0abdc9Theoretical Study of Iron Porphyrin Nitrene: Formation Mechanism, Electronic Nature, and Intermolecular C-H AminationLi, Xinyi; Dong, Lihua; Liu, YongjunInorganic Chemistry (2020), 59 (3), 1622-1632CODEN: INOCAJ; ISSN:0020-1669. (American Chemical Society)The formation mechanism and electronic structures of iron porphyrin nitrene intermediates, as well as the nitrene-mediated intermol. C-H amination have been studied by performing DFT and ab initio complete active space SCF (CASSCF) calcns. Compared with that of cobalt porphyrin nitrene and iron porphyrin carbene, the formation of iron porphyrin nitrene shows similar but different characteristics. The common feature is that all their formation requires to undergo the "far" or "close" complexes, but these complexes correspond to different energies relative to their resp. reactants (isolated metalloporphyrins and azides), which is considered as one main reason to det. the reaction barriers. The overall free energy barrier for the formation of iron porphyrin nitrene was calcd. to be 10.6 kcal/mol on triplet state surface, which is lower than those of cobalt porphyrin nitrene and iron porphyrin carbene. The departure of N2 from the "close complexes" formed by iron porphyrin and tosyl azide is nearly barrierless. For iron porphyrin nitrene, both CASSCF and unrestricted DFT calcns. revealed that the triplet and open-shell singlet complexes correspond to very similar energies, and the triplet nitrene complex can be described as [(por)(-OCH3)FeII = NTs]- ↔ [(por)(-OCH3)FeIII = N•-Ts]- ↔ [(por)(-OCH3)FeIV = N2-Ts]-. While the oss nitrene complex can be described as [(por)(-OCH3)FeIII-N•-Ts]-. Since the N atom bears similar spin d. as in cobalt porphyrin nitrene, the iron porphyrin nitrene exhibits similar activity in hydrogen abstraction. In addn., the intermol. C-H amination catalyzed by iron porphyrin nitrene follows the hydrogen atom abstraction/radical recombination mechanism with a free energy barrier of 7.1 kcal/mol on the triplet state surface. In general, the medium reactivity and easily prepd. characteristic of iron porphyrin nitrene make it a potential catalyst for C-H amination. DFT calcns. revealed that iron porphyrin nitrene shows similar activity as cobalt porphyrin nitrene and iron porphyrin carbene toward H-abstraction and C-H amination.
- 10Kuijpers, P. F.; van der Vlugt, J. I.; Schneider, S.; de Bruin, B. Nitrene Radical Intermediates in Catalytic Synthesis. Chem. Eur. J. 2017, 23, 13819– 13829, DOI: 10.1002/chem.20170253710https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2sXhsV2jur7I&md5=446e3c76df830014fbbc0cf52d63feceNitrene Radical Intermediates in Catalytic SynthesisKuijpers, Petrus F.; van der Vlugt, Jarl Ivar; Schneider, Sven; de Bruin, BasChemistry - A European Journal (2017), 23 (56), 13819-13829CODEN: CEUJED; ISSN:0947-6539. (Wiley-VCH Verlag GmbH & Co. KGaA)Nitrene radical complexes are reactive intermediates with discrete spin d. at the nitrogen-atom of the nitrene moiety. These species have become important intermediates for org. synthesis, being invoked in a broad range of C-H functionalization and aziridination reactions. Nitrene radical complexes have intriguing electronic structures, and are best described as one-electron reduced Fischer type nitrenes. They can be generated by intramol. single electron transfer to the "redox non-innocent" nitrene moiety at the metal. Nitrene radicals generated at open-shell cobalt(II) have thus far received most attention in terms of spectroscopic characterization, reactivity screening, catalytic nitrene-transfer reactions and (computational and exptl.) mechanistic studies, but some interesting iron and precious metal catalysts have also been employed in related reactions involving nitrene radicals. In some cases, redox-active ligands are used to facilitate intramol. single electron transfer from the complex to the nitrene moiety. Org. azides are among the most attractive nitrene precursors in this field, typically requiring pre-activated org. azides (e.g. RSO2N3, (RO)2P(=O)N3, ROC(=O)N3 and alike) to achieve efficient and selective catalysis. Challenging, non-activated aliph. org. azides were recently added to the palette of reagents useful in synthetically relevant reactions proceeding via nitrene radical intermediates. This concept article describes the electronic structure of nitrene radical complexes, emphasizes on their usefulness in the catalytic synthesis of various org. products, and highlights the important developments in the field.
- 11Mahajan, M.; Mondal, B. Origin of the Distinctive Electronic Structure of Co- and Fe-Porphyrin-Nitrene and Its Effect on Their Nitrene Transfer Reactivity. Inorg. Chem. 2023, 62, 5810– 5821, DOI: 10.1021/acs.inorgchem.3c0046311https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3sXmtFOltb4%253D&md5=58b94ec61c589dfa318a9659fe09d9a2Origin of the Distinctive Electronic Structure of Co- and Fe-Porphyrin-Nitrene and Its Effect on Their Nitrene Transfer ReactivityMahajan, Mayank; Mondal, BhaskarInorganic Chemistry (2023), 62 (14), 5810-5821CODEN: INOCAJ; ISSN:0020-1669. (American Chemical Society)Metal-bound nitrene species are the crucial intermediate in catalytic nitrene transfer reactions exhibited by engineered enzymes and mol. catalysts. The electronic structure of such species and its correlation with nitrene transfer reactivity have not been fully understood yet. This work presents an in-depth electronic structure anal. and nitrene transfer reactivity of two prototypical metal-nitrene species derived from CoII(TPP) and FeII(TPP) (TPP = meso-tetraphenylporphyrin) complexes and tosyl azide nitrene precursor. Parallel to the well-known "cobalt(III)-imidyl" electronic structure of the Co-porphyrin-nitrene species, the formation mechanism and electronic structure of the elusive Fe-porphyrin-nitrene have been established using d. functional theory (DFT) and multiconfigurational complete active-space SCF (CASSCF) calcns. Electronic structure evolution anal. for the metal-nitrene formation step and CASSCF-derived natural orbitals advocates that the electronic nature of the metal-nitrene (M-N) core of Fe(TPP) is strikingly different from that of the Co(TPP). Specifically, the "imidyl" nature of the Co-porphyrin-nitrene [(TPP)CoIII-•NTos] (Tos = tosyl) (I1Co) is contrasted by the "imido-like" character of the Fe-porphyrin-nitrene [(TPP)FeIV[Formula Omitted]NTos] (I1Fe). This difference between Co- and Fe-nitrene has been attributed to the addnl. interactions between Fe-dπ and N-pπ orbitals in Fe-nitrene, which is further complemented by the shortened Fe-N bond length of 1.71 Å. This stronger M-N bond in Fe-nitrene compared to the Co-nitrene is also reflected in the higher exothermicity (ΔΔH = 16 kcal/mol) of the Fe-nitrene formation step. The "imido-like" character renders a relatively lower spin population on the nitrene nitrogen (+0.42) in the Fe-nitrene complex I1Fe, which undergoes the nitrene transfer to the C=C bond of styrene with a considerably higher enthalpy barrier (ΔH‡ = 10.0 kcal/mol) compared to the Co congener I1Co (ΔH‡ = 5.6 kcal/mol) possessing a higher nitrogen spin population (+0.88) and a relatively weaker M-N bond (Co-N = 1.80 Å).
- 12Svastits, E. W.; Dawson, J. H.; Breslow, R.; Gellman, S. H. Functionalized Nitrogen Atom Transfer Catalyzed by Cytochrome P-450. J. Am. Chem. Soc. 1985, 107, 6427– 6428, DOI: 10.1021/ja00308a06412https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADyaL2MXmtV2it78%253D&md5=f51c0b1780e8d4ada3255dfcc386e575Functionalized nitrogen atom transfer catalyzed by cytochrome P-450Svastits, Edmund W.; Dawson, John H.; Breslow, Ronald; Gellman, Samuel H.Journal of the American Chemical Society (1985), 107 (22), 6427-8CODEN: JACSAT; ISSN:0002-7863.Purified rabbit liver microsomal cytochrome P 450 (I) catalyzed the inter- and intramol. transfer and insertion of a functionalized N atom into a C-H bond. Although metalloporphyrins and metal complexes have previously been found to catalyze this reaction, this is the 1st report of N atom transfer by I. The intramol. reaction rate was linear with time, I concn., and substrate concn., having a lower limit (because of substrate soly.) of 1.0 nmol product/nmol I/min for the LM3,4 form mixt. The reaction was dependent on the integrity of I; neither partially denatured (P-420) nor extensively denatured I was able to catalyze the reaction. Both the intra- and intermol. transfer reactions were I form-dependent, with the LM2 form exhibiting essentially no activity in contrast to either crude liver microsomes or a mixt. of the LM3 and LM4 purified forms.
- 13Singh, R.; Bordeaux, M.; Fasan, R. P450-Catalyzed Intramolecular sp3 C–H Amination with Arylsulfonyl Azide Substrates. ACS Catal. 2014, 4, 546– 552, DOI: 10.1021/cs400893n13https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2cXjtFantg%253D%253D&md5=1bac46ddee013c69af256110e433f98bP450-Catalyzed Intramolecular sp3 C-H Amination with Arylsulfonyl Azide SubstratesSingh, Ritesh; Bordeaux, Melanie; Fasan, RudiACS Catalysis (2014), 4 (2), 546-552CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)The direct amination of aliph. C-H bonds represents a most valuable transformation in org. chem. While a no. of transition-metal-based catalysts have been developed and investigated for this purpose, the possibility to execute this transformation with biol. catalysts has remained largely unexplored. Here, we report that cytochrome P 450 enzymes can serve as efficient catalysts for mediating intramol. benzylic C-H amination reactions in a variety of arylsulfonyl azide compds. Under optimized conditions, the P 450 catalysts were found to support up to 390 total turnovers leading to the formation of the desired sultam products with excellent regioselectivity. In addn., the chiral environment provided by the enzyme active site allowed for the reaction to proceed in a stereo- and enantioselective manner. The C-H amination activity, substrate profile, and enantio/stereoselectivity of these catalysts could be modulated by utilizing enzyme variants with engineered active sites.
- 14Bordeaux, M.; Singh, R.; Fasan, R. Intramolecular C(sp3)–H Amination of Arylsulfonyl Azides with Engineered and Artificial Myoglobin-Based Catalysts. Bioorg. Med. Chem. 2014, 22, 5697– 5704, DOI: 10.1016/j.bmc.2014.05.01514https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2cXpslCnsrk%253D&md5=e7ce72a1889d52610b523f02ff9933d9Intramolecular C(sp3)-H amination of arylsulfonyl azides with engineered and artificial myoglobin-based catalystsBordeaux, Melanie; Singh, Ritesh; Fasan, RudiBioorganic & Medicinal Chemistry (2014), 22 (20), 5697-5704CODEN: BMECEP; ISSN:0968-0896. (Elsevier B.V.)The direct conversion of aliph. C-H bonds into C-N bonds provides an attractive approach to the introduction of nitrogen-contg. functionalities in org. mols. Following the recent discovery that cytochrome P 450 enzymes can catalyze the cyclization of arylsulfonyl azide compds. via an intramol. C(sp3)-H amination reaction, we have explored here the C-H amination reactivity of other hemoproteins. Various heme-contg. proteins, and in particular myoglobin and horseradish peroxidase, were found to be capable of catalyzing this transformation. Based on this finding, a series of engineered and artificial myoglobin variants contg. active site mutations and non-native Mn- and Co-protoporphyrin IX cofactors, resp., were prepd. to investigate the effect of these structural changes on the catalytic activity and selectivity of these catalysts. Our studies showed that metallo-substituted myoglobins constitute viable C-H amination catalysts, revealing a distinctive reactivity trend as compared to synthetic metalloporphyrin counterparts. On the other hand, amino acid substitutions at the level of the heme pocket were found to be beneficial toward improving the stereo- and enantioselectivity of these Mb-catalyzed reactions. Mechanistic studies involving kinetic isotope effect expts. indicate that C-H bond cleavage is implicated in the rate-limiting step of myoglobin-catalyzed amination of arylsulfonyl azides. Altogether, these studies indicate that myoglobin constitutes a promising scaffold for the design and development of C-H amination catalysts.
- 15McIntosh, J. A.; Coelho, P. S.; Farwell, C. C.; Wang, Z. J.; Lewis, J. C.; Brown, T. R.; Arnold, F. H. Enantioselective Intramolecular C-H Amination Catalyzed by Engineered Cytochrome P450 Enzymes in Vitro and in Vivo. Angew. Chem., Int. Ed. 2013, 52, 9309– 9312, DOI: 10.1002/anie.20130440115https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC3sXhtFOhtL7E&md5=7db28cfd2847377e1ff7130550622fedEnantioselective Intramolecular C-H Amination Catalyzed by Engineered Cytochrome P450 Enzymes In Vitro and In VivoMcIntosh, John A.; Coelho, Pedro S.; Farwell, Christopher C.; Wang, Z. Jane; Lewis, Jared C.; Brown, Tristan R.; Arnold, Frances H.Angewandte Chemie, International Edition (2013), 52 (35), 9309-9312CODEN: ACIEF5; ISSN:1433-7851. (Wiley-VCH Verlag GmbH & Co. KGaA)Though P 450 enzymes are masters of oxygen activation and insertion into C-H bonds, their ability to use nitrogen for the same purpose has so far not been explored. Engineered variants of cytochrome P 450BM3 have now been found to catalyze intramol. C-H aminations in azide substrates. Mutations to two highly conserved residues significantly increased this activity.
- 16Cho, I.; Prier, C. K.; Jia, Z. J.; Zhang, R. K.; Görbe, T.; Arnold, F. H. Enantioselective Aminohydroxylation of Styrenyl Olefins Catalyzed by an Engineered Hemoprotein. Angew. Chem., Int. Ed. 2019, 58, 3138– 3142, DOI: 10.1002/anie.20181296816https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC1MXhvFKgur8%253D&md5=c6948aa2bdbfaa9657335af34eec961dEnantioselective aminohydroxylation of styrenyl olefins catalyzed by an engineered hemoproteinCho, Inha; Prier, Christopher K.; Jia, Zhi-Jun; Zhang, Ruijie K.; Goerbe, Tamas; Arnold, Frances H.Angewandte Chemie, International Edition (2019), 58 (10), 3138-3142CODEN: ACIEF5; ISSN:1433-7851. (Wiley-VCH Verlag GmbH & Co. KGaA)Chiral 1,2-amino alcs. are widely represented in biol. active compds. from neurotransmitters to antivirals. While many synthetic methods have been developed for accessing amino alcs., the direct aminohydroxylation of alkenes to unprotected, enantio-enriched amino alcs. remains a challenge. Using directed evolution, we have engineered a hemoprotein biocatalyst based on a thermostable cytochrome c that directly transforms alkenes to amino alcs. with high enantioselectivity (up to 2500 TTN and 90 % ee) under anaerobic conditions with O-pivaloylhydroxylamine as an aminating reagent. The reaction is proposed to proceed via a reactive iron-nitrogen species generated in the enzyme active site, enabling tuning of the catalyst's activity and selectivity by protein engineering.
- 17Moore, E. J.; Fasan, R. Effect of Proximal Ligand Substitutions on the Carbene and Nitrene Transferase Activity of Myoglobin. Tetrahedron 2019, 75, 2357– 2363, DOI: 10.1016/j.tet.2019.03.00917https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC1MXlslehs7s%253D&md5=9e64d70c0d9255bf8e72f43da07edeb0Effect of proximal ligand substitutions on the carbene and nitrene transferase activity of myoglobinMoore, Eric J.; Fasan, RudiTetrahedron (2019), 75 (16), 2357-2363CODEN: TETRAB; ISSN:0040-4020. (Elsevier Ltd.)Engineered myoglobins (Mbs) were recently shown to be effective catalysts for abiol. carbene and nitrene transfer reactions. Here, we investigated the impact of substituting the conserved heme-coordinating histidine residue with both proteinogenic (Cys, Ser, Tyr, Asp) and non-proteinogenic Lewis basic amino acids (3-(3'-pyridyl)-alanine, p-aminophenylalanine, and β-(3-thienyl)-alanine), on the reactivity of this metalloprotein toward these abiotic transformations. These studies showed that mutation of the proximal histidine residue with both natural and non-natural amino acids result in stable myoglobin variants that can function as both carbene and nitrene transferases. In addn., substitution of the proximal histidine with an aspartate residue led to a myoglobin-based catalyst capable of promoting stereoselective olefin cyclopropanation under nonreducing conditions. Overall, these studies demonstrate that proximal ligand substitution provides a promising strategy to tune the reactivity of myoglobin-based carbene and nitrene transfer catalysts and provide a first, proof-of-principle demonstration of the viability of pyridine-, thiophene-, and aniline-based unnatural amino acids for metalloprotein engineering.
- 18Kalita, S.; Shaik, S.; Dubey, K. D. MD Simulations and QM/MM Calculations Reveal the Key Mechanistic Elements Which Are Responsible for the Efficient C-H Amination Reaction Performed by a Bioengineered P450 Enzyme. Chem. Sci. 2021, 12, 14507– 14518, DOI: 10.1039/D1SC03489H18https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3MXit1aqt7bP&md5=b01a13ce3d0357b78ae9887855bb2a72MD simulations and QM/MM calculations reveal the key mechanistic elements which are responsible for the efficient C-H amination reaction performed by a bioengineered P450 enzymeKalita, Surajit; Shaik, Sason; Dubey, Kshatresh DuttaChemical Science (2021), 12 (43), 14507-14518CODEN: CSHCCN; ISSN:2041-6520. (Royal Society of Chemistry)An enzyme which is capable of catalyzing C-H amination reactions is considered to be a dream tool for chemists due to its pharmaceutical potential and greener approach. Recently, the Arnold group achieved this feat using an engineered CYP411 enzyme, which further undergoes a random directed evolution which increases its efficiency and selectivity. The present study provides mechanistic insight and the root cause of the success of these mutations to enhance the reactivity and selectivity of the mutant enzyme. This is achieved by means of comprehensive MD simulations and hybrid QM/MM calcns. The study shows that the efficient C-H amination by the engineered CYP411 is a combined outcome of electronic and steric effects. The mutation of the axial cysteine ligand to serine relays electron d. to the Fe ion in the heme, and thereby enhances the bonding capability of the heme-iron to the nitrogen atom of the tosyl azide. In comparison, the native cysteine-ligated P 450 cannot bind the tosyl azide. Addnl., the A78V and A82L mutations in P411 provide 'bulk' to the active site which increases the enantioselectivity via a steric effect. At the same time, the QM/MM calcns. elucidate the C-H amination by the iron nitrenoid, revealing a mechanism analogous to Compd. I in the native C-H hydroxylation by P 450.
- 19Wei, Y.; Conklin, M.; Zhang, Y. Biocatalytic Intramolecular C–H Aminations via Engineered Heme Proteins: Full Reaction Pathways and “axial” Ligand Effects. Chem. Eur. J. 2022, 28, e202202006 DOI: 10.1002/chem.20220200619https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB38Xit1aqtLbK&md5=4b4c8a8402e9efc9019bcf5739a45195Biocatalytic Intramolecular C-H aminations via Engineered Heme Proteins: Full Reaction Pathways and Axial Ligand EffectsWei, Yang; Conklin, Melissa; Zhang, YongChemistry - A European Journal (2022), 28 (59), e202202006CODEN: CEUJED; ISSN:0947-6539. (Wiley-VCH Verlag GmbH & Co. KGaA)Engineered heme protein biocatalysts provide an efficient and sustainable approach to develop amine-contg. compds. through C-H amination. A quantum chem. study to reveal the complete heme catalyzed intramol. C-H amination pathway and protein axial ligand effect is reported, using reactions of an exptl. used arylsulfonylazide with hemes contg. L = none, SH-, MeO-, and MeOH to simulate no axial ligand, neg. charged Cys and Ser ligands, and a neutral ligand for comparison. Nitrene formation is the overall rate-detg. step (RDS) and the catalyst with Ser ligand has the best reactivity, consistent with exptl. reports. Both RDS and non-RDS (nitrene transfer) transition states follow the barrier trend of MeO-<SH-<MeOH<None due to the charge donation capability of the axial ligand to influence the key charge transfer process as the electronic driving forces. Results also provide new ideas for future biocatalyst design with enhanced reactivities.
- 20Yang, Y.; Cho, I.; Qi, X.; Liu, P.; Arnold, F. H. An Enzymatic Platform for the Asymmetric Amination of Primary, Secondary and Tertiary C(sp3)–H Bonds. Nat. Chem. 2019, 11, 987– 993, DOI: 10.1038/s41557-019-0343-520https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC1MXhvFyhsr3F&md5=70f7e39108f9a91531d3737d773ad274An enzymatic platform for the asymmetric amination of primary, secondary and tertiary C(sp3)-H bondsYang, Yang; Cho, Inha; Qi, Xiaotian; Liu, Peng; Arnold, Frances H.Nature Chemistry (2019), 11 (11), 987-993CODEN: NCAHBB; ISSN:1755-4330. (Nature Research)The ability to selectively functionalize ubiquitous C-H bonds streamlines the construction of complex mol. architectures from easily available precursors. Here we report enzyme catalysts derived from a cytochrome P 450 that use a nitrene transfer mechanism for the enantioselective amination of primary, secondary and tertiary C(sp3)-H bonds. These fully genetically encoded enzymes are produced and function in bacteria, where they can be optimized by directed evolution for a broad spectrum of enantioselective C(sp3)-H amination reactions. These catalysts can aminate a variety of benzylic, allylic and aliph. C-H bonds in excellent enantioselectivity with access to either antipode of product. Enantioselective amination of primary C(sp3)-H bonds in substrates that bear geminal di-Me substituents furnished chiral amines that feature a quaternary stereocenter. Moreover, these enzymes enabled the enantioconvergent transformation of racemic substrates that possess a tertiary C(sp3)-H bond to afford products that bear a tetrasubstituted stereocenter, a process that has eluded small-mol. catalysts. Further engineering allowed for the enantioselective construction of methyl-Et stereocenters, which is notoriously challenging in asym. catalysis.
- 21Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Scalmani, G.; Barone, V.; Petersson, G. A.; Nakatsuji, H.; Li, X.; Caricato, M.; Marenich, A. V.; Bloino, J.; Janesko, B. G.; Gomperts, R.; Mennucci, B.; Hratchian, H. P.; Ortiz, J. V.; Izmaylov, A. F.; Sonnenberg, J. L.; Williams-Young, D.; Ding, F.; Lipparini, F.; Egidi, F.; Goings, J.; Peng, B.; Petrone, A.; Henderson, T.; Ranasinghe, D.; Zakrzewski, V. G.; Gao, J.; Rega, N.; Zheng, G.; Liang, W.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Vreven, T.; Throssell, K.; Montgomery, J. A., Jr.; Peralta, J. E.; Ogliaro, F.; Bearpark, M. J.; Heyd, J. J.; Brothers, E. N.; Kudin, K. N.; Staroverov, V. N.; Keith, T. A.; Kobayashi, R.; Normand, J.; Raghavachari, K.; Rendell, A. P.; Burant, J. C.; Iyengar, S. S.; Tomasi, J.; Cossi, M.; Millam, J. M.; Klene, M.; Adamo, C.; Cammi, R.; Ochterski, J. W.; Martin, R. L.; Morokuma, K.; Farkas, O.; Foresman, J. B.; Fox, D. J. Gaussian 16, Revision C.01; Gaussian, Inc.: Wallingford CT, 2016.There is no corresponding record for this reference.
- 22Lee, C.; Yang, W.; Parr, R. G. Development of the Colle-Salvetti Correlation-Energy Formula into a Functional of the Electron Density. Phys. Rev. B 1988, 37, 785– 789, DOI: 10.1103/PhysRevB.37.78522https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADyaL1cXktFWrtbw%253D&md5=ee7b59267a2ff72e15171a481819ccf8Development of the Colle-Salvetti correlation-energy formula into a functional of the electron densityLee, Chengteh; Yang, Weitao; Parr, Robert G.Physical Review B: Condensed Matter and Materials Physics (1988), 37 (2), 785-9CODEN: PRBMDO; ISSN:0163-1829.A correlation-energy formula due to R. Colle and D. Salvetti (1975), in which the correlation energy d. is expressed in terms of the electron d. and a Laplacian of the 2nd-order Hartree-Fock d. matrix, is restated as a formula involving the d. and local kinetic-energy d. On insertion of gradient expansions for the local kinetic-energy d., d.-functional formulas for the correlation energy and correlation potential are then obtained. Through numerical calcns. on a no. of atoms, pos. ions, and mols., of both open- and closed-shell type, it is demonstrated that these formulas, like the original Colle-Salvetti formulas, give correlation energies within a few percent.
- 23Becke, A. D. Density-Functional Thermochemistry. III. The Role of Exact Exchange. J. Chem. Phys. 1993, 98, 5648– 5652, DOI: 10.1063/1.46491323https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADyaK3sXisVWgtrw%253D&md5=291bbfc119095338bb1624f0c21c7ca8Density-functional thermochemistry. III. The role of exact exchangeBecke, Axel D.Journal of Chemical Physics (1993), 98 (7), 5648-52CODEN: JCPSA6; ISSN:0021-9606.Despite the remarkable thermochem. accuracy of Kohn-Sham d.-functional theories with gradient corrections for exchange-correlation, the author believes that further improvements are unlikely unless exact-exchange information is considered. Arguments to support this view are presented, and a semiempirical exchange-correlation functional (contg. local-spin-d., gradient, and exact-exchange terms) is tested for 56 atomization energies, 42 ionization potentials, 8 proton affinities, and 10 total at. energies of first- and second-row systems. This functional performs better than previous functionals with gradient corrections only, and fits expt. atomization energies with an impressively small av. abs. deviation of 2.4 kcal/mol.
- 24Moreau, Y.; Chen, H.; Derat, E.; Hirao, H.; Bolm, C.; Shaik, S. NR Transfer Reactivity of Azo-Compound I of P450. How Does the Nitrogen Substituent Tune the Reactivity of the Species toward C-H and C = C Activation?. J. Phys. Chem. B 2007, 111, 10288– 10299, DOI: 10.1021/jp074306524https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD2sXos1Slu70%253D&md5=76ea380b7e224cb407991d647bf4fca9NR Transfer Reactivity of Azo-Compound I of P450. How Does the Nitrogen Substituent Tune the Reactivity of the Species toward C-H and C:C Activation?Moreau, Yohann; Chen, Hui; Derat, Etienne; Hirao, Hajime; Bolm, Carsten; Shaik, SasonJournal of Physical Chemistry B (2007), 111 (34), 10288-10299CODEN: JPCBFK; ISSN:1520-6106. (American Chemical Society)The authors studied electronic structures and reactivity patterns of azo-compd. I species (RN-Cpd I) by comparison to O-Cpd I of, e.g., cytochrome P 450. The RN-Cpd I species are capable of C=C aziridination and C-H amidation, in a two-state mechanism similar to that of O-Cpd I. However, unlike O-Cpd I, here the nitrogen substituent (R) exerts a major impact on structure and reactivity. Thus, Fe = NR bonds of RN-Cpd I will generally be substantially longer than Fe = O bonds; electron-withdrawing R groups will generate a very long Fe = N bond, whereas electron-releasing R groups should have the opposite effect and hence a shorter Fe = N bond. The R substituent controls also the reactivity of RN-Cpd I toward C=C and C-H bonds by exerting steric and electronic effects. Anal. shows that an electron-releasing substituent will lower the barriers for both bond activation reactions, since the electronic factor makes the reactions highly exothermic, while an electron-withdrawing one should raise both barriers. The steric bulk of the substituent is predicted to inhibit more strongly the aziridination reactions. It is predicted that electron-releasing substituents with small bulk will create powerful aziridination reagents, whereas electron-withdrawing substituents like MeSO2 will prefer C-H bond activation with preference that increases with steric bulk. Finally, the study predicts (i) that the reactions of RN-Cpd I will be less stereospecific than those of O-Cpd I and (ii) that aziridination will be more stereoselective than amidation.
- 25Sharon, D. A.; Mallick, D.; Wang, B.; Shaik, S. Computation Sheds Insight into Iron Porphyrin Carbenes’ Electronic Structure, Formation, and N-H Insertion Reactivity. J. Am. Chem. Soc. 2016, 138, 9597– 9610, DOI: 10.1021/jacs.6b0463625https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC28XhtVKisLzN&md5=4613b53fe83b6c8888c64009274ee1f1Computation Sheds Insight into Iron Porphyrin Carbenes' Electronic Structure, Formation, and N-H Insertion ReactivitySharon, Dina A.; Mallick, Dibyendu; Wang, Binju; Shaik, SasonJournal of the American Chemical Society (2016), 138 (30), 9597-9610CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)Iron porphyrin carbenes constitute a new frontier of species with considerable synthetic potential. Exquisitely engineered myoglobin and cytochrome P 450 enzymes can generate these complexes and facilitate the transformations they mediate. The current work harnesses d. functional theor. methods to provide insight into the electronic structure, formation, and N-H insertion reactivity of an iron porphyrin carbene, [Fe(Por)(SCH3)(CHCO2Et)]-, a model of a complex believed to exist in an exptl. studied artificial metalloenzyme. The ground state electronic structure of the terminal form of this complex is an open-shell singlet, with two antiferromagnetically coupled electrons residing on the iron center and carbene ligand. As the authors shall reveal, the bonding properties of [Fe(Por)(SCH3)(CHCO2Et)]-are remarkably analogous to those of ferric heme superoxide complexes. The carbene forms by dinitrogen loss from Et diazoacetate. This reaction occurs preferentially through an open-shell singlet transition state: iron donates electron d. to weaken the C-N bond undergoing cleavage. Once formed, the iron porphyrin carbene accomplishes N-H insertion via nucleophilic attack. The resulting ylide then rearranges, using an internal carbonyl base, to form an enol that leads to the product. The findings rationalize exptl. obsd. reactivity trends reported in artificial metalloenzymes employing iron porphyrin carbenes. Also, these results suggest a possible expansion of enzymic substrate scope, to include aliph. amines. Thus, this work, among the first several computational explorations of these species, contributes insights and predictions to the surging interest in iron porphyrin carbenes and their synthetic potential.
- 26Schäfer, A.; Horn, H.; Ahlrichs, R. Fully Optimized Contracted Gaussian Basis Sets for Atoms Li to Kr. J. Chem. Phys. 1992, 97, 2571– 2577, DOI: 10.1063/1.463096There is no corresponding record for this reference.
- 27Schäfer, A.; Huber, C.; Ahlrichs, R. Fully Optimized Contracted Gaussian Basis Sets of Triple Zeta Valence Quality for Atoms Li to Kr. J. Chem. Phys. 1994, 100, 5829– 5835, DOI: 10.1063/1.467146There is no corresponding record for this reference.
- 28Grimme, S.; Ehrlich, S.; Goerigk, L. Effect of the Damping Function in Dispersion Corrected Density Functional Theory. J. Comput. Chem. 2011, 32, 1456– 1465, DOI: 10.1002/jcc.2175928https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC3MXjsF2isL0%253D&md5=370c4fe3164f548718b4bfcf22d1c753Effect of the damping function in dispersion corrected density functional theoryGrimme, Stefan; Ehrlich, Stephan; Goerigk, LarsJournal of Computational Chemistry (2011), 32 (7), 1456-1465CODEN: JCCHDD; ISSN:0192-8651. (John Wiley & Sons, Inc.)It is shown by an extensive benchmark on mol. energy data that the math. form of the damping function in DFT-D methods has only a minor impact on the quality of the results. For 12 different functionals, a std. "zero-damping" formula and rational damping to finite values for small interat. distances according to Becke and Johnson (BJ-damping) has been tested. The same (DFT-D3) scheme for the computation of the dispersion coeffs. is used. The BJ-damping requires one fit parameter more for each functional (three instead of two) but has the advantage of avoiding repulsive interat. forces at shorter distances. With BJ-damping better results for nonbonded distances and more clear effects of intramol. dispersion in four representative mol. structures are found. For the noncovalently-bonded structures in the S22 set, both schemes lead to very similar intermol. distances. For noncovalent interaction energies BJ-damping performs slightly better but both variants can be recommended in general. The exception to this is Hartree-Fock that can be recommended only in the BJ-variant and which is then close to the accuracy of cor. GGAs for non-covalent interactions. According to the thermodn. benchmarks BJ-damping is more accurate esp. for medium-range electron correlation problems and only small and practically insignificant double-counting effects are obsd. It seems to provide a phys. correct short-range behavior of correlation/dispersion even with unmodified std. functionals. In any case, the differences between the two methods are much smaller than the overall dispersion effect and often also smaller than the influence of the underlying d. functional. © 2011 Wiley Periodicals, Inc.; J. Comput. Chem., 2011.
- 29Marenich, A. V.; Cramer, C. J.; Truhlar, D. G. Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface Tensions. J. Phys. Chem. B 2009, 113, 6378– 6396, DOI: 10.1021/jp810292n29https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD1MXksV2is74%253D&md5=54931a64c70d28445ee53876a8b1a4b9Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface TensionsMarenich, Aleksandr V.; Cramer, Christopher J.; Truhlar, Donald G.Journal of Physical Chemistry B (2009), 113 (18), 6378-6396CODEN: JPCBFK; ISSN:1520-6106. (American Chemical Society)We present a new continuum solvation model based on the quantum mech. charge d. of a solute mol. interacting with a continuum description of the solvent. The model is called SMD, where the "D" stands for "d." to denote that the full solute electron d. is used without defining partial at. charges. "Continuum" denotes that the solvent is not represented explicitly but rather as a dielec. medium with surface tension at the solute-solvent boundary. SMD is a universal solvation model, where "universal" denotes its applicability to any charged or uncharged solute in any solvent or liq. medium for which a few key descriptors are known (in particular, dielec. const., refractive index, bulk surface tension, and acidity and basicity parameters). The model separates the observable solvation free energy into two main components. The first component is the bulk electrostatic contribution arising from a self-consistent reaction field treatment that involves the soln. of the nonhomogeneous Poisson equation for electrostatics in terms of the integral-equation-formalism polarizable continuum model (IEF-PCM). The cavities for the bulk electrostatic calcn. are defined by superpositions of nuclear-centered spheres. The second component is called the cavity-dispersion-solvent-structure term and is the contribution arising from short-range interactions between the solute and solvent mols. in the first solvation shell. This contribution is a sum of terms that are proportional (with geometry-dependent proportionality consts. called at. surface tensions) to the solvent-accessible surface areas of the individual atoms of the solute. The SMD model has been parametrized with a training set of 2821 solvation data including 112 aq. ionic solvation free energies, 220 solvation free energies for 166 ions in acetonitrile, methanol, and DMSO, 2346 solvation free energies for 318 neutral solutes in 91 solvents (90 nonaq. org. solvents and water), and 143 transfer free energies for 93 neutral solutes between water and 15 org. solvents. The elements present in the solutes are H, C, N, O, F, Si, P, S, Cl, and Br. The SMD model employs a single set of parameters (intrinsic at. Coulomb radii and at. surface tension coeffs.) optimized over six electronic structure methods: M05-2X/MIDI!6D, M05-2X/6-31G*, M05-2X/6-31+G**, M05-2X/cc-pVTZ, B3LYP/6-31G*, and HF/6-31G*. Although the SMD model has been parametrized using the IEF-PCM protocol for bulk electrostatics, it may also be employed with other algorithms for solving the nonhomogeneous Poisson equation for continuum solvation calcns. in which the solute is represented by its electron d. in real space. This includes, for example, the conductor-like screening algorithm. With the 6-31G* basis set, the SMD model achieves mean unsigned errors of 0.6-1.0 kcal/mol in the solvation free energies of tested neutrals and mean unsigned errors of 4 kcal/mol on av. for ions with either Gaussian03 or GAMESS.
- 30Li, C.; Wu, W.; Cho, K.; Shaik, S. Oxidation of Tertiary Amines by Cytochrome P450─Kinetic Isotope Effect as a Spin-State Reactivity Probe. Chem. Eur. J. 2009, 15, 8492– 8503, DOI: 10.1002/chem.20080221530https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD1MXhtVGkurnP&md5=6cefc570a06bd30948ba49b2bc5e5731Oxidation of Tertiary Amines by Cytochrome P450-Kinetic Isotope Effect as a Spin-State Reactivity ProbeLi, Chunsen; Wu, Wei; Cho, Kyung-Bin; Shaik, SasonChemistry - A European Journal (2009), 15 (34), 8492-8503, S8492/1-S8492/37CODEN: CEUJED; ISSN:0947-6539. (Wiley-VCH Verlag GmbH & Co. KGaA)Two types of tertiary amine oxidn. processes, namely, N-dealkylation and N-oxygenation, by compd. I (Cpd I) of cytochrome P 450 are studied theor. using hybrid DFT calcns. All the calcns. show that both N-dealkylation and N-oxygenation of trimethylamine (TMA) proceed preferentially from the low-spin (LS) state of Cpd I. Indeed, the computed kinetic isotope effects (KIEs) for the rate-controlling hydrogen abstraction step of dealkylation show that only the KIELS fits the exptl. datum, whereas the corresponding value for the high-spin (HS) process is much higher. These results second those published before for N,N-dimethylaniline (DMA), and as such, they further confirm the conclusion drawn then that KIEs can be a sensitive probe of spin state reactivity. The ferric-carbinolamine of TMA decomps. most likely in a non-enzymic reaction since the Fe-O bond dissocn. energy (BDE) is neg. The computational results reveal that in the reverse reaction of N-oxygenation, the N-oxide of arom. amine can serve as a better oxygen donor than that of aliph. amine to generate Cpd I. This capability of the N-oxo derivs. of arom. amines to transfer oxygen to the heme, and thereby generate Cpd I, is in good accord with exptl. data previously reported.
- 31Harvey, J. N.; Aschi, M.; Schwarz, H.; Koch, W. The Singlet and Triplet States of Phenyl Cation. A Hybrid Approach for Locating Minimum Energy Crossing Points between Non-Interacting Potential Energy Surfaces. Theor. Chem. Acc. 1998, 99, 95– 99, DOI: 10.1007/s00214005030931https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADyaK1cXivFersbY%253D&md5=9c4c10c86066903756d178c2b2ff1988The singlet and triplet states of phenyl cation. A hybrid approach for locating minimum energy crossing points between non-interacting potential energy surfacesHarvey, Jeremy N.; Aschi, Massimiliano; Schwarz, Helmut; Koch, WolframTheoretical Chemistry Accounts (1998), 99 (2), 95-99CODEN: TCACFW; ISSN:1432-881X. (Springer-Verlag)The Ph cation is known to have 2 low-energy min., corresponding to 1A1 and 3B1 states, the first of which is more stable by ∼25 kcal/mol. The min. energy crossing point between these 2 surfaces, located at various levels including a hybrid method first described here, lies just above the min. of the triplet, 0.12 kcal/mol at the CCSD(T)/cc-pVDZ// B3LYP/SV level, and there is significant spin-orbit coupling between the surfaces at this point. On the basis of these results, the lifetime of the triplet is expected to be very short.
- 32Rodríguez-Guerra, J. Jaimergp/easymecp: V0.3.2. Zenodo November 27, 2020.There is no corresponding record for this reference.
- 33Roos, B. O. The Complete Active Space Self-Consistent Field Method and Its Applications in Electronic Structure Calculations. Adv. Chem. Phys. 1987, 69, 399– 445, DOI: 10.1002/9780470142943.ch733https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADyaL1cXislSnsQ%253D%253D&md5=a0f607142d6f4c16ebaa41b500c3e5feThe complete active space self-consistent field method and its applications in electronic structure calculationsRoos, BjoernAdvances in Chemical Physics (1987), 69 (Ab Initio Methods Quantum Chem.--2), 399-445CODEN: ADCPAA; ISSN:0065-2385.A review with 121 refs.
- 34Kupper, C.; Mondal, B.; Serrano-Plana, J.; Klawitter, I.; Neese, F.; Costas, M.; Ye, S.; Meyer, F. Nonclassical Single-State Reactivity of an Oxo-Iron(IV) Complex Confined to Triplet Pathways. J. Am. Chem. Soc. 2017, 139, 8939– 8949, DOI: 10.1021/jacs.7b0325534https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2sXos1Sgsb0%253D&md5=7eb94d7b8a17d4858c85280098ad86b9Nonclassical Single-State Reactivity of an Oxo-Iron(IV) Complex Confined to Triplet PathwaysKupper, Claudia; Mondal, Bhaskar; Serrano-Plana, Joan; Klawitter, Iris; Neese, Frank; Costas, Miquel; Ye, Shengfa; Meyer, FrancJournal of the American Chemical Society (2017), 139 (26), 8939-8949CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)C-H bond activation mediated by oxo-iron (IV) species represents the key step of many heme and nonheme O2-activating enzymes. Of crucial interest is the effect of spin state of the FeIV(O) unit. Here we report the C-H activation kinetics and corresponding theor. investigations of an exclusive tetracarbene ligated oxo-iron(IV) complex, [LNHCFeIV(O)(MeCN)]2+ (1). Kinetic traces using substrates with bond dissocn. energies (BDEs) up to 80 kcal mol-1 show pseudo-first-order behavior and large but temp.-dependent kinetic isotope effects (KIE 32 at -40 °C). When compared with a topol. related oxo-iron(IV) complex bearing an equatorial N-donor ligand, [LTMCFeIV(O) (MeCN)]2+ (A), the tetracarbene complex 1 is significantly more reactive with second order rate consts. k'2 that are 2-3 orders of magnitude higher. UV-vis expts. in tandem with cryospray mass spectrometry evidence that the reaction occurs via formation of a hydroxo-iron(III) complex (4) after the initial H atom transfer (HAT). An extensive computational study using a wave function based multireference approach, viz. complete active space SCF (CASSCF) followed by N-electron valence perturbation theory up to second order (NEVPT2), provided insight into the HAT trajectories of 1 and A. Calcd. free energy barriers for 1 reasonably agree with exptl. values. Because the strongly donating equatorial tetracarbene pushes the Fe-dx2-y2 orbital above dz2, 1 features a dramatically large quintet-triplet gap of ∼18 kcal/mol compared to ∼2-3 kcal/mol computed for A. Consequently, the HAT process performed by 1 occurs on the triplet surface only, in contrast to complex A reported to feature two-state-reactivity with contributions from both triplet and quintet states. Despite this, the reactive FeIV(O) units in 1 and A undergo the same electronic-structure changes during HAT. Thus, the unique complex 1 represents a pure "triplet-only" ferryl model.
- 35Mondal, B.; Neese, F.; Bill, E.; Ye, S. Electronic Structure Contributions of Non-Heme Oxo-Iron(V) Complexes to the Reactivity. J. Am. Chem. Soc. 2018, 140, 9531– 9544, DOI: 10.1021/jacs.8b0427535https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC1cXht1yltLjK&md5=08310812b871d3d224dfe279c6dca724Electronic Structure Contributions of Non-Heme Oxo-Iron(V) Complexes to the ReactivityMondal, Bhaskar; Neese, Frank; Bill, Eckhard; Ye, ShengfaJournal of the American Chemical Society (2018), 140 (30), 9531-9544CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)Oxo-iron(V) species have been implicated in the catalytic cycle of the Rieske dioxygenase. Its synthetic analog, [FeV(O)(OC(O)CH3)(PyNMe3)]2+ (1, PyNMe3 = 3,6,9,15-tetraazabicyclo[9.3.1]pentadeca-1(15),11,13-triene-3,6,9- trimethyl), derived from the O-O bond cleavage of its acetylperoxo iron(III) precursor, has been shown exptl. to perform regio- and stereo-selective C-H and C=C bond functionalization. However, its structure-activity relation is poorly understood. Herein we present a detailed electronic-structure and spectroscopic anal. of complex 1 along with well-characterized oxo-iron(V) complexes, [FeV(O)(TAML)]- (2, TAML = tetraamido macrocyclic ligand), [FeV(O)(TMC)(NC(O)CH3)]+ (4, TMC = 1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane) and [FeV(O)(TMC)(NC(OH)CH3)]2+ (4-H+) using wavefunction-based multireference complete active-space SCF calcns. Our results reveal that the x/y anisotropy of the 57Fe A-matrix is not a reliable spectroscopic marker to identify oxo-iron(V) species, and that the drastically different Ax and Ay values detd. for complexes 1, 4 and 4-H+ have distinctive origins compared to complex 2, a genuine oxo-iron(V) species. Complex 1, in fact, has a dominant character of [FeIV(O•••OC(O)CH3)2-•]2+, i.e. an SFe = 1 iron(IV) center antiferromagnetically coupled to an O-O σ* radical, where the O-O bond has not been completely broken. Complex 4 is best described as a triplet ferryl unit that strongly interacts with the trans acetylimidyl radical in an antiferromagnetic fashion, [FeIV(O)(•N=C(O-)CH3)]+. Complex 4-H+ features a similar electronic structure, [FeIV(O)(•N=C(OH)CH3)]2+. Owing to the remaining approx. half σ-bond in the O-O moiety, complex 1 can arrange two electron-accepting orbitals (α σ* O-O and β Fe-dxz) in such a way that both orbitals can simultaneously interact with the doubly occupied electron-donating orbitals (σC-H or πC-C). Hence, complex 1 can promote a concerted yet asynchronous two-electron oxidn. of the C-H and C=C bonds, which nicely explains the stereospecificity obsd. for complex 1 and the related species.
- 36Angeli, C.; Cimiraglia, R.; Evangelisti, S.; Leininger, T.; Malrieu, J.-P. Introduction of n -Electron Valence States for Multireference Perturbation Theory. J. Chem. Phys. 2001, 114, 10252– 10264, DOI: 10.1063/1.136124636https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD3MXkt1antro%253D&md5=1bd85c0ec505be43e660bfe9820ab455Introduction of n-electron valence states for multireference perturbation theoryAngeli, C.; Cimiraglia, R.; Evangelisti, S.; Leininger, T.; Malrieu, J.-P.Journal of Chemical Physics (2001), 114 (23), 10252-10264CODEN: JCPSA6; ISSN:0021-9606. (American Institute of Physics)The present work presents three second-order perturbative developments from a complete active space (CAS) zero-order wave function, which are strictly additive with respect to mol. dissocn. and intruder state free. They differ by the degree of contraction of the outer-space perturbers. Two types of zero-order Hamiltonians are proposed, both are bielectronic, incorporating the interactions between electrons in the active orbitals, therefore introducing a rational balance between the zero-order wave function and the outer-space. The use of Dyall's Hamiltonian, which puts the active electrons in a fixed core field, and of a partially contracted formalism seems a promising compromise. The formalism is generalizable to multireference spaces which are parts of a CAS. A few test applications of the simplest variant developed in this paper illustrate its potentialities.
- 37Neese, F. The ORCA Program System. WIREs Comput. Mol. Sci. 2012, 2, 73– 78, DOI: 10.1002/wcms.8137https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC38XhvFGls7s%253D&md5=a753e33a6f9a326553295596f5c754e5The ORCA program systemNeese, FrankWiley Interdisciplinary Reviews: Computational Molecular Science (2012), 2 (1), 73-78CODEN: WIRCAH; ISSN:1759-0884. (Wiley-Blackwell)A review. ORCA is a general-purpose quantum chem. program package that features virtually all modern electronic structure methods (d. functional theory, many-body perturbation and coupled cluster theories, and multireference and semiempirical methods). It is designed with the aim of generality, extendibility, efficiency, and user friendliness. Its main field of application is larger mols., transition metal complexes, and their spectroscopic properties. ORCA uses std. Gaussian basis functions and is fully parallelized. The article provides an overview of its current possibilities and documents its efficiency.
- 38Wang, J.; Gao, H.; Yang, L.; Gao, Y. Q. Role of Engineered Iron-Haem Enzyme in Reactivity and Stereoselectivity of Intermolecular Benzylic C–H Bond Amination. ACS Catal. 2020, 10, 5318– 5327, DOI: 10.1021/acscatal.0c0024838https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXmvFSjtrY%253D&md5=739401196e8d8035efee2b018999a633Role of Engineered Iron-haem Enzyme in Reactivity and Stereoselectivity of Intermolecular Benzylic C-H Bond AminationWang, Juping; Gao, Hui; Yang, Lijiang; Gao, Yi QinACS Catalysis (2020), 10 (9), 5318-5327CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)A recent success in which the engineered iron-haem enzymes P411CHA' aminate the intermol. benzylic C-H bond with both high efficiency and stereoselectivity solves a long-standing challenge in synthetic chem. (). The mechanism, reactivity, and stereoselectivity of this reaction were studied by quantum mech. (QM)/mol. mech. (MM) calcns. in this work. To understand better the origin of such an excellent catalytic performance of biocatalyst P411CHA', iron-cofactor FePIX alone for the intermol. C-H bond amination was also theor. investigated as a comparison. The catalytic cycle includes two processes: N2 dissocn. and nitrene transfer. The calcn. results show that P411CHA' enzyme can catalyze intermol. C-H amination with high reactivity and stereoselectivity, whereas the FePIX-catalyzed reaction has much higher barriers for both N2 dissocn. and nitrene transfer compared to P411CHA'. The reason for this dramatic difference in catalytic reactivity between P411CHA' and FePIX is that the former but not the latter allows the formation of precursors B-5PR1 and B-3PR2, which are structurally close to transition states B-3TS1 and B-3TS2 and accelerate N2 dissocn. and nitrene transfer, resp. The mutated residues (A82L A78V F263L) assist the formations of B-5PR1 and B-3PR2 via reducing effectively the size of the haem distal pocket. High stereoselectivity of P411CHA' stems from the steric effect in H-abstraction. A theor. anal. on how para substituent R affects reactivity was also carried out. A strong π-type electron-donating group on the substrate enhances significantly the reactivity of P411CHA'-catalyzed intermol. C-H amination. These results provide valuable information for designing and constructing environmentally friendly biocatalytic C-H amination systems with high reactivity and stereoselectivity.
- 39Huang, H.; Zhao, D.-X.; Yang, Z.-Z. Theoretical Study of Enantioenriched Aminohydroxylation of Styrene Catalyzed by an Engineered Hemoprotein. J. Phys. Org. Chem. 2022, 35, e4280 DOI: 10.1002/poc.428039https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3MXhvFSgsrbL&md5=176ca25e4b29d251963bec24e577a312Theoretical study of enantioenriched aminohydroxylation of styrene catalyzed by an engineered hemoproteinHuang, Hong; Zhao, Dong-Xia; Yang, Zhong-ZhiJournal of Physical Organic Chemistry (2022), 35 (1), e4280CODEN: JPOCEE; ISSN:0894-3230. (John Wiley & Sons Ltd.)Transforming olefins to chiral amino alcs. is a useful approach to synthesize biol. active natural products and numerous drugs. A recent study has demonstrated a promising and synthetic value of an engineered hemoprotein for catalyzing olefins to chiral amino alcs. with 2500 total turnover nos. and 90% ee. D. functional theory (DFT) calcn. has been used to systematically investigate the detailed mechanisms of the aforementioned process. One electron transfers from Fe atom to HN-nitrene in the iron-nitrene intermediate formation. Subsequently, styrene aziridination, singlet state is characterized by a nonradical, concerted nonsynchronous mechanism, while a radical and stepwise mechanism for triplet. Through hydrolysis reaction forming amino alc. enantiomers, radical intermediate in triplet state without ring-opening process is obviously more feasible than singlet aziridine, where the energy barrier difference between triplet and singlet approaches to 20.00 kcal/mol. Moreover, due to the hydrogen bond effect, the water dimer-assisted hydrolysis reaction is effective to reduce the energy barrier by about 7.00 kcal/mol compared with one water assisted in triplet; however, the energy barrier difference in singlet is unapparent with only 0.18 kcal/mol accompanied with ring-opening process. Further, homol. modeling shows that the reactivity and enantioselectivity can be attributed to the structure of the enzyme active pocket. This study sheds light on the mechanism of engineered hemoprotein-mediated amino alcs. synthesis and shows the development of biol. catalysts.
- 40Das, S. K.; Das, S.; Ghosh, S.; Roy, S.; Pareek, M.; Roy, B.; Sunoj, R. B.; Chattopadhyay, B. An Iron(II)-Based Metalloradical System for Intramolecular Amination of C(sp2)-H and C(sp3)-H Bonds: Synthetic Applications and Mechanistic Studies. Chem. Sci. 2022, 13, 11817– 11828, DOI: 10.1039/D2SC03505G40https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB38XisFWqsLjK&md5=bb4b135053d6d32b8174071efdbefa25An iron(II)-based metalloradical system for intramolecular amination of C(sp2)-H and C(sp3)-H bonds: synthetic applications and mechanistic studiesDas, Sandip Kumar; Das, Subrata; Ghosh, Supratim; Roy, Satyajit; Pareek, Monika; Roy, Brindaban; Sunoj, Raghavan B.; Chattopadhyay, BuddhadebChemical Science (2022), 13 (40), 11817-11828CODEN: CSHCCN; ISSN:2041-6520. (Royal Society of Chemistry)A catalytic system for intramol. C(sp2)-H and C(sp3)-H amination of substituted tetrazolopyridines was successfully developed. The amination reactions were developed using an iron-porphyrin based catalytic system. It was demonstrated that the same iron-porphyrin based catalytic system efficiently activates both the C(sp2)-H and C(sp3)-H bonds of the tetrazole as well as azide-featuring substrates with a high level of regioselectivity. The method exhibited an excellent functional group tolerance. The method afforded three different classes of high-value N-heterocyclic scaffolds. A no. of important late-stage C-H aminations were performed to access important classes of mols. Detailed studies (exptl. and computational) showed that both the C(sp2)-H and C(sp3)-H amination reactions involve a metalloradical activation mechanism, which is different from the previously reported electro-cyclization mechanism. Collectively, this study reports the discovery of a new class of metalloradical activation modes using a base metal catalyst that should find wide application in the context of medicinal chem., drug discovery and industrial applications.
- 41Liu, Z.; Qin, Z. Y.; Zhu, L.; Athavale, S. V.; Sengupta, A.; Jia, Z. J.; Garcia-Borràs, M.; Houk, K. N.; Arnold, F. H. An Enzymatic Platform for Primary Amination of 1-Aryl-2-Alkyl Alkynes. J. Am. Chem. Soc. 2022, 144, 80– 85, DOI: 10.1021/jacs.1c1134041https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3MXivVSgu7jP&md5=10f53827154128d185548298619bca88An enzymic platform for primary amination of 1-aryl-2-alkyl alkynesLiu, Zhen; Qin, Zi-Yang; Zhu, Ledong; Athavale, Soumitra V.; Sengupta, Arkajyoti; Jia, Zhi-Jun; Garcia-Borras, Marc; Houk, K. N.; Arnold, Frances H.Journal of the American Chemical Society (2022), 144 (1), 80-85CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)Propargyl amines are versatile synthetic intermediates with numerous applications in the pharmaceutical industry. An attractive strategy for efficient prepn. of these compds. is nitrene propargylic C(sp3)-H insertion. However, achieving this reaction with good chemo-, regio-, and enantioselective control has proven to be challenging. Here, we report an enzymic platform for the enantioselective propargylic amination of alkynes using a hydroxylamine deriv. as the nitrene precursor. Cytochrome P 450 variant PA-G8 catalyzing this transformation was identified after eight rounds of directed evolution. A variety of 1-aryl-2-alkyl alkynes are accepted by PA-G8, including those bearing heteroarom. rings. This biocatalytic process is efficient and selective (up to 2610 total turnover no. (TTN) and 96% ee) and can be performed on preparative scale.
- 42Mai, B. K.; Neris, N. M.; Yang, Y.; Liu, P. C-N Bond Forming Radical Rebound Is the Enantioselectivity-Determining Step in P411-Catalyzed Enantioselective C(sp3)-H Amination: A Combined Computational and Experimental Investigation. J. Am. Chem. Soc. 2022, 144, 11215– 11225, DOI: 10.1021/jacs.2c0228342https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB38Xht12ntrjM&md5=df1cc58ecca20dbcb0e4231dee9d5df0C-N Bond forming radical rebound is the enantioselectivity-determining step in P411-catalyzed enantioselective C(sp3)-H amination: A combined computational and experimental investigationMai, Binh Khanh; Neris, Natalia M.; Yang, Yang; Liu, PengJournal of the American Chemical Society (2022), 144 (25), 11215-11225CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)Engineered metalloenzymes represent promising catalysts for stereoselective C-H functionalization reactions. Recently, P 450 enzymes have been evolved to allow for new-to-nature intramol. C(sp3)-H amination reactions via a nitrene transfer mechanism, giving rise to diamine derivs. with excellent enantiocontrol. To shed light on the origin of enantioselectivity, a combined computational and exptl. study was carried out. Hybrid quantum mechanics/mol. mechanics calcns. were performed to investigate the activation energies and enantioselectivities of both the hydrogen atom transfer (HAT) and the subsequent C-N bond forming radical rebound steps. Contrary to previously hypothesized enantioinduction mechanisms, our calcns. show that the radical rebound step is enantioselectivity-detg., whereas the preceding HAT step is only moderately stereoselective. Furthermore, the selectivity in the initial HAT is ablated by rapid conformational change of the radical intermediate prior to C-N bond formation. This finding is corroborated by our exptl. study using a set of enantiomerically pure, monodeuterated substrates. Furthermore, classical and ab initio mol. dynamics simulations were carried out to investigate the conformational flexibility of the carbon-centered radical intermediate. This key radical species undergoes a facile conformational change in the enzyme active site from the pro-(R) to the pro-(S) configuration, whereas the radical rebound is slower due to the spin-state change and ring strain of the cyclization process, thereby allowing stereoablative C-N bond formation. Together, these studies revealed an underappreciated enantioinduction mechanism in biocatalytic C(sp3)-H functionalizations involving radical intermediates, opening up new avenues for the development of other challenging asym. C(sp3)-H functionalizations.
- 43Goswami, M.; Lyaskovskyy, V.; Domingos, S. R.; Buma, W. J.; Woutersen, S.; Troeppner, O.; Ivanović-Burmazović, I.; Lu, H.; Cui, X.; Zhang, X. P.; Reijerse, E. J.; DeBeer, S.; van Schooneveld, M. M.; Pfaff, F. F.; Ray, K.; de Bruin, B. Characterization of Porphyrin-Co(III)-‘Nitrene Radical’ Species Relevant in Catalytic Nitrene Transfer Reactions. J. Am. Chem. Soc. 2015, 137, 5468– 5479, DOI: 10.1021/jacs.5b0119743https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC2MXmtVWqtbY%253D&md5=bffd5d0592296f82e59fa5890ae0e053Characterization of Porphyrin-Co(III)-'Nitrene Radical' Species Relevant in Catalytic Nitrene Transfer ReactionsGoswami, Monalisa; Lyaskovskyy, Volodymyr; Domingos, Sergio R.; Buma, Wybren Jan; Woutersen, Sander; Troeppner, Oliver; Ivanovic-Burmazovic, Ivana; Lu, Hongjian; Cui, Xin; Zhang, X. Peter; Reijerse, Edward J.; DeBeer, Serena; van Schooneveld, Matti M.; Pfaff, Florian Felix; Ray, Kallol; de Bruin, BasJournal of the American Chemical Society (2015), 137 (16), 5468-5479CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)To fully characterize the CoIII-'nitrene radical' species that are proposed as intermediates in nitrene transfer reactions mediated by Co(II) porphyrins, different combinations of Co(II) complexes of porphyrins and nitrene transfer reagents were combined, and the generated species were studied using EPR, UV-visible, IR, VCD, UHR-ESI-MS, and XANES/XAFS measurements. Reactions of Co(II) porphyrins 1P1 (P1 = meso-tetraphenylporphyrin (TPP)) and 1P2 (P2 = 3,5-DitBu-ChenPhyrin) with org. azides 2Ns (NsN3), 2Ts (TsN3), and 2Troc (TrocN3) gave mono-nitrene species 3P1Ns, 3P2Ts, and 3P2Troc, resp., which are best described as [CoIII(por)(NR''•-)] nitrene radicals (imidyl radicals) resulting from single electron transfer from the Co(II) porphyrin to the 'nitrene' moiety (Ns: R'' = -SO2-p-C6H5NO2; Ts: R'' = -SO2C6H6; Troc: R'' = -C(O)OCH2CCl3). Remarkably, the reaction of 1P1 with N-nosyl iminoiodane (PhI = NNs) 4Ns gave a bis-nitrene species 5P1Ns. This species is best described as a triple-radical complex [(por•-)CoIII(NR''•-)2] contg. three ligand-centered unpaired electrons: two nitrene radicals (NR''•-) and one oxidized porphyrin radical (por•-). Thus, the formation of the 2nd nitrene radical involves another intramol. 1-electron transfer to the nitrene moiety, but now from the porphyrin ring instead of the metal center. This bis-nitrene species is obsd. only on reacting 4Ns with 1P1. Reaction of the more bulky 1P2 with 4Ns results again in formation of mainly mono-nitrene species 3P2Ns according to EPR and ESI-MS spectroscopic studies. The mono- and bis-nitrene species were initially expected to be five- and six-coordinate species, resp., but XANES data revealed that both mono- and bis-nitrene species are six-coordinate Oh species. The nature of the 6th ligand bound to Co(III) in the mono-nitrene case remains elusive, but some plausible candidates are NH3, NH2-, NsNH-, and OH-; NsNH- being the most plausible. Conversion of mono-nitrene species 3P1Ns into bis-nitrene species 5P1Ns upon reaction with 4Ns was demonstrated. Solns. contg. 3P1Ns and 5P1Ns proved to be still active in catalytic aziridination of styrene, consistent with their proposed key involvement in nitrene transfer reactions mediated by Co(II) porphyrins.
- 44van Leest, N. P.; de Bruin, B. Revisiting the Electronic Structure of Cobalt Porphyrin Nitrene and Carbene Radicals with NEVPT2-CASSCF Calculations: Doublet versus Quartet Ground States. Inorg. Chem. 2021, 60, 8380– 8387, DOI: 10.1021/acs.inorgchem.1c0091044https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3MXht1aktLfI&md5=a4151a49c33645af3f635af58b1e3a50Revisiting the Electronic Structure of Cobalt Porphyrin Nitrene and Carbene Radicals with NEVPT2-CASSCF Calculations: Doublet versus Quartet Ground Statesvan Leest, Nicolaas P.; de Bruin, BasInorganic Chemistry (2021), 60 (12), 8380-8387CODEN: INOCAJ; ISSN:0020-1669. (American Chemical Society)Cobalt porphyrin complexes are established catalysts for carbene and nitrene radical group-transfer reactions. The key carbene and mono- and bisnitrene radical complexes coordinated to [Co(TPP)] (TPP = tetraphenylporphyrin) have previously been investigated with a variety of exptl. techniques and supporting (single-ref.) d. functional theory (DFT) calcns. that indicated doublet (S = 1/2) ground states for all three species. In this contribution, we revisit their electronic structures with multireference N-electron valence state perturbation theory (NEVPT2)-complete-active-space self-consistent-field (CASSCF) calcns. to investigate possible multireference contributions to the ground-state wave functions. The carbene ([CoIII(TPP)(•CHCO2Et)]) and mononitrene ([CoIII(TPP)(•NNs)]) radical complexes were confirmed to have uncomplicated doublet ground states, although a higher carbene or nitrene radical character and a lower Co-C/N bond order was found in the NEVPT2-CASSCF calcns. Supported by ESR anal. and spin counting, paramagnetic molar susceptibility detn., and NEVPT2-CASSCF calcns., we report that the cobalt porphyrin bisnitrene complex ([CoIII(TPP•)(•NNs)2]) has a quartet (S = 3/2) spin ground state, with a thermally accessible multireference and multideterminant "broken-symmetry" doublet spin excited state. A spin flip on the porphyrin-centered unpaired electron allows for interconversion between the quartet and broken-symmetry doublet spin states, with an approx. 10-fold higher Boltzmann population of the quartet at room temp.
- 45Vardhaman, A. K.; Barman, P.; Kumar, S.; Sastri, C. V.; Kumar, D.; de Visser, S. P. Comparison of the Reactivity of Nonheme Iron(IV)-Oxo versus Iron(IV)-Imido Complexes: Which Is the Better Oxidant?. Angew. Chem., Int. Ed. 2013, 52, 12288– 12292, DOI: 10.1002/anie.20130537045https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC3sXhs1SkurrO&md5=5394f63cbc81f6f4a6c66a2168d06f22Comparison of the Reactivity of Nonheme Iron(IV)-Oxo versus Iron(IV)-Imido Complexes: Which is the Better Oxidant?Vardhaman, Anil Kumar; Barman, Prasenjit; Kumar, Suresh; Sastri, Chivukula V.; Kumar, Devesh; de Visser, Sam P.Angewandte Chemie, International Edition (2013), 52 (47), 12288-12292CODEN: ACIEF5; ISSN:1433-7851. (Wiley-VCH Verlag GmbH & Co. KGaA)A comparative study on the reactivity patterns of nonheme iron(IV)-oxo vs. iron(IV)-imido is reported. Owing to the larger electron affinity of the oxidant, iron(IV)-imido is a better oxidant of sulfoxidn. reactions than iron(IV)-oxo. By contrast, these trends are reversed for stepwise one-electron transfer reactions, such as hydrogen atom abstraction reactions where stereochem. interactions upon substrate approach det. the relative rate consts.
- 46Mukherjee, G.; Reinhard, F. G. C.; Bagha, U. K.; Sastri, C. V.; de Visser, S. P. Sluggish Reactivity by a Nonheme Iron(IV)-Tosylimido Complex as Compared to Its Oxo Analogue. Dalt. Trans. 2020, 49, 5921– 5931, DOI: 10.1039/D0DT00018CThere is no corresponding record for this reference.
- 47Coin, G.; Patra, R.; Rana, S.; Biswas, J. P.; Dubourdeaux, P.; Clémancey, M.; De Visser, S. P.; Maiti, D.; Maldivi, P.; Latour, J. M. Fe-Catalyzed Aziridination Is Governed by the Electron Affinity of the Active Imido-Iron Species. ACS Catal. 2020, 10, 10010– 10020, DOI: 10.1021/acscatal.0c0142747https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BB3cXhsFOjur7I&md5=ab4928c1884e438026da1536bdf96d98Fe-Catalyzed Aziridination Is Governed by the Electron Affinity of the Active Imido-Iron SpeciesCoin, Guillaume; Patra, Ranjan; Rana, Sujoy; Biswas, Jyoti Prasad; Dubourdeaux, Patrick; Clemancey, Martin; de Visser, Sam P.; Maiti, Debabrata; Maldivi, Pascale; Latour, Jean-MarcACS Catalysis (2020), 10 (17), 10010-10020CODEN: ACCACS; ISSN:2155-5435. (American Chemical Society)Aziridination has very recently been found to be catalyzed by heme and nonheme Fe enzymes, opening the way to biotechnol. developments. However, its mechanism is not fully understood owing to the contrasting behaviors exhibited by several Fe catalysts. Indeed, whereas a few Fe catalysts exhibit an activity dominated by inductive effects, the activity of others reveal significant and even dominant radical delocalization. Therefore, no clear and general rationale of aziridination has yet emerged. Elaborating on our previous studies, we anticipated that replacing two pyridines of a pentanitrogen ligand by two quinolines would enhance the electron affinity of the corresponding imido FeIV active species and hence its aziridination activity. This proved to be the case, and Hammett correlations indicate an electrophilic active species and dominant inductive effects. The calcd. reaction profile points to a two-step mechanism with the formation of the first C-N bond being rate-detg. and involving a strong charge transfer in the transition state. The aziridine ring closure in the second step is almost barrierless. A clear correlation of aziridination yields with calcd. EA for Fe-catalysts indicate that the dependence of aziridination efficacy on EA of active species is a quite general feature. To generalize this anal., we reinvestigated a catalyst exhibiting a radical delocalization dominance. Indeed, a similar two-step mechanism was found, which involves a partial charge transfer in the C-N bond formation as all other cases. The interesting point is that owing to the strong steric hindrance of the catalyst substitution, the aziridine ring closure of the intermediate benzylic radical (second step) becomes rate-detg., thus explaining the dominance of the radical delocalization effect. Eventually, a general aziridination two-step mechanism has been rationalized, and EA thus appears as the key descriptor for Fe-based catalytic aziridination that can be used in a predictable way.
- 48Shaik, S.; Chen, H.; Janardanan, D. Exchange-Enhanced Reactivity in Bond Activation by Metal–Oxo Enzymes and Synthetic Reagents. Nat. Chem. 2011, 3, 19– 27, DOI: 10.1038/nchem.94348https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A280%3ADC%252BC3M%252Fks1eksQ%253D%253D&md5=febe609e3dcc95a3ed35c27ed0ed291bExchange-enhanced reactivity in bond activation by metal-oxo enzymes and synthetic reagentsShaik Sason; Chen Hui; Janardanan DeepaNature chemistry (2011), 3 (1), 19-27 ISSN:.Reactivity principles based on orbital overlap and bonding/antibonding interactions are well established to describe the reactivity of organic species, and atomic structures are typically predicted by Hund's rules to have maximum single-electron occupancy of degenerate orbitals in the ground state. Here, we extend the role of exchange to transition states and discuss how, for reactions and kinetics of bioinorganic species, the analogue of Hund's rules is exchange-controlled reactivity. Pathways that increase the number of unpaired and spin-identical electrons on a metal centre will be favoured by exchange stabilization. Such exchange-enhanced reactivity endows transition states with a stereochemistry different from that observed in cases that are not exchange-enhanced, and is in good agreement with the reactivity observed for iron-based enzymes and synthetic analogues. We discuss the interplay between orbital- and exchange-controlled principles, and how this depends on the identity of the transition metal, its oxidation number and its coordination sphere.
- 49Wong, S. D.; Bell, C. B.; Liu, L. V.; Kwak, Y.; England, J.; Alp, E. E.; Zhao, J.; Que, L.; Solomon, E. I. Nuclear Resonance Vibrational Spectroscopy on the FeIV = O S = 2 Non-Heme Site in TMG 3 Tren: Experimentally Calibrated Insights into Reactivity. Angew. Chem., Int. Ed. 2011, 50, 3215– 3218, DOI: 10.1002/anie.20100769249https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC3MXjsFyqsr0%253D&md5=7bb2269957996f9fb8a6bd0991f82030Nuclear Resonance Vibrational Spectroscopy on FeIV=O S=2 non-heme site in TMG3tren: experimentally calibrated insights into reactivityWong, Shaun D.; Bell, Caleb B., III; Liu, Lei V.; Kwak, Yeonju; England, Jason; Alp, E. Ercan; Zhao, Jiyong; Que, Lawrence, Jr.; Solomon, Edward I.Angewandte Chemie, International Edition (2011), 50 (14), 3215-3218, S3215/1-S3215/8CODEN: ACIEF5; ISSN:1433-7851. (Wiley-VCH Verlag GmbH & Co. KGaA)[(TMG3tren)FeIV=O] (1) has an FeV=O unit ligated by TMG3tren in a C3, trigonal bipyramidal geometry, and an S = 2 ground state replicating that of enzyme intermediates.TMG3tren = 1,1,1-tris{2-[N2-(1,1,3,3-tetramethylguanidino)]ethyl}amine. We utilize nuclear resonance vibrational spectroscopy (NRVS) to obtain ground-state vibrational data on 1. DFT optimizations of 1 using both the BP86 and B3LYP functionals gave structures in good agreement with X-ray crystallog. and EXAFS results.
- 50Hirao, H.; Kumar, D.; Que, L.; Shaik, S. Two-State Reactivity in Alkane Hydroxylation by Non-Heme Iron–Oxo Complexes. J. Am. Chem. Soc. 2006, 128, 8590– 8606, DOI: 10.1021/ja061609o50https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD28XlvFemsrs%253D&md5=f062159a5fbeddd390452052096c9929Two-State Reactivity in Alkane Hydroxylation by Non-Heme Iron-Oxo ComplexesHirao, Hajime; Kumar, Devesh; Que, Lawrence, Jr.; Shaik, SasonJournal of the American Chemical Society (2006), 128 (26), 8590-8606CODEN: JACSAT; ISSN:0002-7863. (American Chemical Society)D. functional theory is used to explore the mechanisms of alkane hydroxylation for four synthetic non-heme iron(IV)-oxo complexes with three target substrates (Kaizer, J.; Klinker, E. J.; Oh, N. Y.; Rohde; J.-U.; Song, W. J.; Stubna, A.; Kim, J.; Muenck, E.; Nam, W.; Que, L. Jr. J. Am. Chem. Soc. 2004, 126, 472-473; Rohde, J.-U.; Que, L. Jr. Angew. Chem. Int. Ed. 2005, 44, 2255-2258.). The iron-oxo reagents possess triplet ground states and low-lying quintet excited states. The set of exptl. and theor. reactivity trends can be understood if the reactions proceed on the two spin states, namely two-state reactivity (TSR); an appropriate new model is presented. The TSR model makes testable predictions: (a) If crossing to the quintet state occurs, the hydroxylation will be effectively concerted; however, if the process transpires only on the triplet surface, stepwise hydroxylation will occur, and side products derived from radical intermediates would be obsd. (e.g., loss of stereochem.). (b) In cases of crossing en route to the quintet transition state, one expects kinetic isotope effects (KIEs) typical of tunneling. (c) In situations where the two surfaces contribute to the rate, one expects intermediate KIEs and radical scrambling patterns that reflect the two processes. (d) Solvent effects on these reactions are expected to be very large.
- 51Louwerse, M. J.; Jan Baerends, E. Oxidative Properties of FeO2+: Electronic Structure and Solvation Effects. Phys. Chem. Chem. Phys. 2007, 9, 156– 166, DOI: 10.1039/B613182D51https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD28Xht12qtb3L&md5=e28d4bf268777a3a01095cacdbb2c846Oxidative properties of FeO2+: electronic structure and solvation effectsLouwerse, Manuel J.; Baerends, Evert JanPhysical Chemistry Chemical Physics (2007), 9 (1), 156-166CODEN: PPCPFQ; ISSN:1463-9076. (Royal Society of Chemistry)An electronic structure anal. is provided of the action of solvated FeO2+, [FeO(H2O)5]2+, as a hydroxylation catalyst. It is emphasized that the oxo end of FeO2+ does not form hydrogen bonds (as electron donor and H-bond acceptor) with H-bond donors nor with aliph. C-H bonds, but it activates C-H bonds as an electron acceptor. It is extremely electrophilic, to the extent that it can activate even such poor electron donors as aliph. C-H bonds, the C-H bond orbital acting as electron donor in a charge transfer type of interaction. Lower lying O-H bonding orbitals are less easily activated. The primary electron accepting orbital in a water environment is the 3σ*α orbital, an antibonding combination of Fe-3dz2 and O-2pz, which is very low-lying relative to the π*α compared with, for example, the σ* orbital in O2 relative to its π*. This is ascribed to relatively small Fe-3dz2 with O-2pz overlap, due to the nodal structure of the 3dz2.The H-abstraction barrier is very low in the gas phase, but it is considerably enhanced in water solvent. This is shown to be due to strong screening effects of the dielec. medium, leading to relative destabilization of the levels of the charged [FeO(H2O)5]2+ species compared to those of the neutral substrate mols., making it a less effective electron acceptor. The solvent directly affects the orbital interactions responsible for the catalytic reaction.
- 52Hirao, H.; Que, L.; Nam, W.; Shaik, S. A Two-State Reactivity Rationale for Counterintuitive Axial Ligand Effects on the C-H Activation Reactivity of Nonheme FeIV = O Oxidants. Chem. Eur. J. 2008, 14, 1740– 1756, DOI: 10.1002/chem.20070173952https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BD1cXkvVKns78%253D&md5=238da9fec5e5c88e8c5fc377e2124c61A two-state reactivity rationale for counterintuitive axial ligand effects on the C-H activation reactivity of nonheme FeIV=O oxidantsHirao, Hajime; Que, Lawrence, Jr.; Nam, Wonwoo; Shaik, SasonChemistry - A European Journal (2008), 14 (6), 1740-1756CODEN: CEUJED; ISSN:0947-6539. (Wiley-VCH Verlag GmbH & Co. KGaA)This paper addresses the observation of counterintuitive reactivity patterns of iron-oxo reagents, TMC(L)FeO2+.1+; L = CH3CN, CF3CO2-, N3-, and SR-, in O-transfer to phosphines vs. H-abstraction from, for example, 1,4-cyclohexadiene. Expts. show that O-transfer reactivity correlates with the electrophilicity of the oxidant, but H-abstraction reactivity follows an opposite trend. DFT/B3LYP calcns. reveal that two-state reactivity (TSR) serves as a compelling rationale for these trends, whereby all reactions involve two adjacent spin-states of the iron(IV)-oxo species, triplet and quintet. The ground state triplet surface has high barriers, whereas the excited state quintet surface features lower ones. The barriers, on any single surface, are found to increase as the electrophilicity of TMC(L)FeO2+.1+ decreases. Thus, the counterintuitive behavior of the H-abstraction reactions cannot be explained by considering the reactivity of only a single spin state but can be rationalized by a TSR model in which the reactions proceed on the two surfaces. Two TSR models are outlined: one is traditional involving a variable transmission coeff. for crossover from triplet to quintet, followed by quintet-state reactions; the other considers the net barrier as a blend of the triplet and quintet barriers. The blending coeff. (x), which ests. the triplet participation, increases as the quintet-triplet energy gap of the TMC(L)FeO2+.1+ reagent increases, in the following order of L: CH3CN > CF3CO2- > N3- > SR-. The calcd. barriers predict the dichotomic exptl. trends and the counterintuitive behavior of the H-abstraction series. The TSR approaches make a variety of testable predictions.
- 53Janardanan, D.; Wang, Y.; Schyman, P.; Que, L.; Shaik, S. The Fundamental Role of Exchange-Enhanced Reactivity in C-H Activation by S = 2 Oxo Iron(IV) Complexes. Angew. Chem., Int. Ed. 2010, 49, 3342– 3345, DOI: 10.1002/anie.20100000453https://chemport.cas.org/services/resolver?origin=ACS&resolution=options&coi=1%3ACAS%3A528%3ADC%252BC3cXlt1Glsbc%253D&md5=31d193552454472eeaf4137c6fb2c0c9The fundamental role of exchange-enhanced reactivity in C-H activation by S = 2 oxo iron(IV) complexesJanardanan, Deepa; Wang, Yong; Schyman, Patric; Que, Lawrence, Jr.; Shaik, SasonAngewandte Chemie, International Edition (2010), 49 (19), 3342-3345, S3342/1-S3342/51CODEN: ACIEF5; ISSN:1433-7851. (Wiley-VCH Verlag GmbH & Co. KGaA)C-H-Activation of 1,4-cyclohexadiene by nitrogen tri- and tetradentate iron(IV) oxo complexes was explored by DFT calcn. of potential energy surface of allylic hydrogen cleavage to form cyclohexadienyl radical and hydroxyiron(III) complex. 1,4-Cyclohexadiene undergoes hydrogen abstraction in reaction with triimine complex [(L1-N4)FeO]2+ [1-t, L1-N4 = tris(N-methyleneaminoethyl)amine], triguanidine complex [(L2-N4)FeO]2+ [1, L2-N4 = tris[N-bis(dimethylamino)methyleneaminoethyl]amine], tetrapyridine complex [(L3-N5)FeO]2+ [2, L3-N5 = bis(2-pyridinylmethyl)(di-2-pyridinylmethyl)amine], macrocyclic [(L4-N4)(MeCN)FeO]2+ [3, L4-N4 = 1,5,8,12-tetramethyl-1,5,8,12-tetraazatetradecane] and neutral scorpionate [(TpPh)FeO(O2CPh)] [4, TpPh = hydrotris(3,5-diphenylpyrazolyl)borate], giving 2,5-cyclohexadienyl radical and corresponding iron(III) complexes [(Ln-Nm)(L)Fe(OH)]k+ (L absent or MeCN, K = 2, 0). The reaction rate strongly depends on the spin state of Fe(IV), having favorable activation barriers for quintet complexes (S = 2). Whereas the quintet state is the ground state for 1-t, 1 and 4, complexes 2 and 3 exist in triplet ground state. For 2 and 3, hydrogen abstraction from the quintet state is almost barrier-free; the low reactivity of these species is accounted for low probability of the spin crossover and entropic effects of assocn. Low reactivity of 1 is a result of high activation barriers both for triplet and quintet states. Triplet and quintet states for 4 are very near in energy, the quintet state features monodentate benzoate, which facilitates the reaction. The overall reactivity is changed in a series of 4»2≥1>3.
Supporting Information
Supporting Information
The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/jacsau.3c00670.
Structure evaluation at different DFT methods; full electronic structures at the CASSCF level; electronic structure evolution studies; MECP geometries, HAT reactivity, and d–d transition energies; and optimized Cartesian coordinates for all the species involved (PDF)
Terms & Conditions
Most electronic Supporting Information files are available without a subscription to ACS Web Editions. Such files may be downloaded by article for research use (if there is a public use license linked to the relevant article, that license may permit other uses). Permission may be obtained from ACS for other uses through requests via the RightsLink permission system: http://pubs.acs.org/page/copyright/permissions.html.