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Discovery of Highly Potent and Selective Small Molecule ADAMTS-5 Inhibitors That Inhibit Human Cartilage Degradation via Encoded Library Technology (ELT)
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    Discovery of Highly Potent and Selective Small Molecule ADAMTS-5 Inhibitors That Inhibit Human Cartilage Degradation via Encoded Library Technology (ELT)
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    ELT Boston, Platform Technology and Science, GlaxoSmithKline, Waltham, Massachusetts, United States
    Biopharm Discovery, Medicines Discovery and Development, GlaxoSmithKline, Upper Merion, Pennsylvania, United States
    § Biological Reagent and Assay Development, Platform Technology and Science, GlaxoSmithKline, Upper Providence, Pennsylvania, United States
    Center of Excellence for External Drug Discovery, Medicines Discovery and Development, GlaxoSmithKline, Upper Merion, Pennsylvania, United States
    Screening and Compound Profiling, Platform Technology and Science, GlaxoSmithKline, Upper Providence, Pennsylvania, United States
    # Muscle Metabolism Discovery Performance Unit, Medicines Discovery and Development, GlaxoSmithKline, Research Triangle Park, North Carolina, United States
    *For H.D.: phone, 1-781-795-4302; fax, 1-781-795-4496; e-mail, [email protected]. For C.C.A.-M.: phone, 1-781-795-4272; fax, 1-781-795-4496; e-mail, [email protected]
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    Journal of Medicinal Chemistry

    Cite this: J. Med. Chem. 2012, 55, 16, 7061–7079
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    https://doi.org/10.1021/jm300449x
    Published August 14, 2012
    Copyright © 2012 American Chemical Society

    Abstract

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    The metalloprotease ADAMTS-5 is considered a potential target for the treatment of osteoarthritis. To identify selective inhibitors of ADAMTS-5, we employed encoded library technology (ELT), which enables affinity selection of small molecule binders from complex mixtures by DNA tagging. Selection of ADAMTS-5 against a four-billion member ELT library led to a novel inhibitor scaffold not containing a classical zinc-binding functionality. One exemplar, (R)-N-((1-(4-(but-3-en-1-ylamino)-6-(((2-(thiophen-2-yl)thiazol-4-yl)methyl)amino)-1,3,5-triazin-2-yl)pyrrolidin-2-yl)methyl)-4-propylbenzenesulfonamide (8), inhibited ADAMTS-5 with IC50 = 30 nM, showing >50-fold selectivity against ADAMTS-4 and >1000-fold selectivity against ADAMTS-1, ADAMTS-13, MMP-13, and TACE. Extensive SAR studies showed that potency and physicochemical properties of the scaffold could be further improved. Furthermore, in a human osteoarthritis cartilage explant study, compounds 8 and 15f inhibited aggrecanase-mediated 374ARGS neoepitope release from aggrecan and glycosaminoglycan in response to IL-1β/OSM stimulation. This study provides the first small molecule evidence for the critical role of ADAMTS-5 in human cartilage degradation.

    Copyright © 2012 American Chemical Society

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    The human biological samples were sourced ethically, and their research use was in accord with the terms of the informed consents. All studies were conducted after review by the GSK Institutional Animal Care and Use Committee and in accordance with the GSK Policy on the Care, Welfare and Treatment of Laboratory Animals.

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    Experimental details for the synthesis of the DNA encoded library, the ADAMTS-5 inhibition experiment with various concentrations of ZnCl2, the substrate–inhibitor competition experiment, the solubility and artificial membrane permeability assays, and rat liver microsomal stability assay. This material is available free of charge via the Internet at http://pubs.acs.org.

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    This article is cited by 129 publications.

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    42. Xin Wen, Xinyuan Wu, Rui Jin, Xiaojie Lu. Privileged heterocycles for DNA-encoded library design and hit-to-lead optimization. European Journal of Medicinal Chemistry 2023, 248 , 115079. https://doi.org/10.1016/j.ejmech.2022.115079
    43. Omer S. Ashruf, Mohammad Yunus Ansari. Natural Compounds: Potential Therapeutics for the Inhibition of Cartilage Matrix Degradation in Osteoarthritis. Life 2023, 13 (1) , 102. https://doi.org/10.3390/life13010102
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    45. Árpád Furka. Forty years of combinatorial technology. Drug Discovery Today 2022, 27 (10) , 103308. https://doi.org/10.1016/j.drudis.2022.06.008
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    48. Isaline F.S.F. Castan, Andrew Madin, Garry Pairaudeau, Michael J. Waring. Scope of on-DNA nucleophilic aromatic substitution on weakly-activated heterocyclic substrates for the synthesis of DNA-encoded libraries. Bioorganic & Medicinal Chemistry 2022, 63 , 116688. https://doi.org/10.1016/j.bmc.2022.116688
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    52. Matthew J. Anderson, Isaline F. S. F. Castan, Jessica S. Graham, Haitham Hassan, Jake Odger, Catherine L. A. Salvini, Cameron Taylor, Michael J. Waring. Advancements in DEL-Compatible Chemical Reactions. 2022, 65-121. https://doi.org/10.1007/7355_2022_151
    53. Barry A. Morgan. A Perspective on 30 Years of DNA-Encoded Chemistry. 2022, 259-276. https://doi.org/10.1007/7355_2022_152
    54. Katelyn J. Billings, Melissa C. Grenier-Davies. Library Synthesis: Building Block Selection, Handling, and Tracking. 2022, 1-11. https://doi.org/10.1007/978-1-0716-2545-3_1
    55. Yashoda Krishna Sunkari, Vijay Kumar Siripuram, Thu-Lan Nguyen, Marc Flajolet. High-power screening (HPS) empowered by DNA-encoded libraries. Trends in Pharmacological Sciences 2022, 43 (1) , 4-15. https://doi.org/10.1016/j.tips.2021.10.008
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    59. Isaline F.S.F. Castan, Jessica S. Graham, Catherine L.A. Salvini, Harriet A. Stanway-Gordon, Michael J. Waring. On the design of lead-like DNA-encoded chemical libraries. Bioorganic & Medicinal Chemistry 2021, 43 , 116273. https://doi.org/10.1016/j.bmc.2021.116273
    60. Connor W. Coley, Natalie S. Eyke, Klavs F. Jensen. Autonome Entdeckung in den chemischen Wissenschaften, Teil I: Fortschritt. Angewandte Chemie 2020, 132 (51) , 23054-23091. https://doi.org/10.1002/ange.201909987
    61. Connor W. Coley, Natalie S. Eyke, Klavs F. Jensen. Autonomous Discovery in the Chemical Sciences Part I: Progress. Angewandte Chemie International Edition 2020, 59 (51) , 22858-22893. https://doi.org/10.1002/anie.201909987
    62. Surendra Dawadi, Nicholas Simmons, Gabriella Miklossy, Kurt M. Bohren, John C. Faver, Melek Nihan Ucisik, Pranavanand Nyshadham, Zhifeng Yu, Martin M. Matzuk. Discovery of potent thrombin inhibitors from a protease-focused DNA-encoded chemical library. Proceedings of the National Academy of Sciences 2020, 117 (29) , 16782-16789. https://doi.org/10.1073/pnas.2005447117
    63. Qiuxia Chen, Xuemin Cheng, Lifang Zhang, Xianyang Li, Purui Chen, Jian Liu, Lanjun Zhang, Hong Wei, Zhonghan Li, Dengfeng Dou. Exploring the Lower Limit of Individual DNA-Encoded Library Molecules in Selection. SLAS Discovery 2020, 25 (5) , 523-529. https://doi.org/10.1177/2472555219893949
    64. Justin M. Rectenwald, Shiva Krishna Reddy Guduru, Zhao Dang, Leonard B. Collins, Yi-En Liao, Jacqueline L. Norris-Drouin, Stephanie H. Cholensky, Kyle W. Kaufmann, Scott M. Hammond, Dmitri B. Kireev, Stephen V. Frye, Kenneth H. Pearce. Design and Construction of a Focused DNA-Encoded Library for Multivalent Chromatin Reader Proteins. Molecules 2020, 25 (4) , 979. https://doi.org/10.3390/molecules25040979
    65. Daniel Madsen, Carlos Azevedo, Iolanda Micco, Lars Kolster Petersen, Nils Jakob Vest Hansen. An overview of DNA-encoded libraries: A versatile tool for drug discovery. 2020, 181-249. https://doi.org/10.1016/bs.pmch.2020.03.001
    66. A.R. Bihlet, M.A. Karsdal, J.R. Andersen, C.L. Bager. Use of extracellular matrix biomarkers in clinical research. 2019, 353-362. https://doi.org/10.1016/B978-0-12-817068-7.00035-5
    67. João Pedro Garcia, Jeroen Stein, Yunpeng Cai, Frank Riemers, Ezequiel Wexselblatt, Jesper Wengel, Marianna Tryfonidou, Avner Yayon, Kenneth A. Howard, Laura B. Creemers. Fibrin-hyaluronic acid hydrogel-based delivery of antisense oligonucleotides for ADAMTS5 inhibition in co-delivered and resident joint cells in osteoarthritis. Journal of Controlled Release 2019, 294 , 247-258. https://doi.org/10.1016/j.jconrel.2018.12.030
    68. Aroa Duro‐Castano, Ngee Han Lim, Isabelle Tranchant, Mehdi Amoura, Fabrice Beau, Heike Wieland, Otmar Kingler, Matthias Herrmann, Marc Nazaré, Oliver Plettenburg, Vincent Dive, María J. Vicent, Hideaki Nagase. In Vivo Imaging of MMP‐13 Activity Using a Specific Polymer‐FRET Peptide Conjugate Detects Early Osteoarthritis and Inhibitor Efficacy. Advanced Functional Materials 2018, 28 (37) https://doi.org/10.1002/adfm.201802738
    69. Verena Kunig, Marco Potowski, Anne Gohla, Andreas Brunschweiger. DNA-encoded libraries – an efficient small molecule discovery technology for the biomedical sciences. Biological Chemistry 2018, 399 (7) , 691-710. https://doi.org/10.1515/hsz-2018-0119
    70. Letian Kuai, Thomas O’Keeffe, Christopher Arico-Muendel. Randomness in DNA Encoded Library Selection Data Can Be Modeled for More Reliable Enrichment Calculation. SLAS Discovery 2018, 23 (5) , 405-416. https://doi.org/10.1177/2472555218757718
    71. Xing Li, Peiheng He, Ziqing Li, Haixing Wang, Minghao Liu, Yinbo Xiao, Dongliang Xu, Yan Kang, Hua Wang. Interleukin‑1β‑mediated suppression of microRNA‑27a‑3p activity in human cartilage via MAPK and NF‑κB pathways: A potential mechanism of osteoarthritis pathogenesis. Molecular Medicine Reports 2018, 40 https://doi.org/10.3892/mmr.2018.8970
    72. Yizhou Li, Roberto De Luca, Samuele Cazzamalli, Francesca Pretto, Davor Bajic, Jörg Scheuermann, Dario Neri. Versatile protein recognition by the encoded display of multiple chemical elements on a constant macrocyclic scaffold. Nature Chemistry 2018, 10 (4) , 441-448. https://doi.org/10.1038/s41557-018-0017-8
    73. Pierfausto Seneci. Step IIIb: The Drug-Like Chemical Diversity Pool: Diverse and Targeted Compound Collections. 2018, 115-177. https://doi.org/10.1016/B978-0-08-099420-8.00004-3
    74. Yves Ruff, Frédéric Berst. Efficient copper-catalyzed amination of DNA-conjugated aryl iodides under mild aqueous conditions. MedChemComm 2018, 9 (7) , 1188-1193. https://doi.org/10.1039/C8MD00185E
    75. Carl A. Machutta, Christopher S. Kollmann, Kenneth E. Lind, Xiaopeng Bai, Pan F. Chan, Jianzhong Huang, Lluis Ballell, Svetlana Belyanskaya, Gurdyal S. Besra, David Barros-Aguirre, Robert H. Bates, Paolo A. Centrella, Sandy S. Chang, Jing Chai, Anthony E. Choudhry, Aaron Coffin, Christopher P. Davie, Hongfeng Deng, Jianghe Deng, Yun Ding, Jason W. Dodson, David T. Fosbenner, Enoch N. Gao, Taylor L. Graham, Todd L. Graybill, Karen Ingraham, Walter P. Johnson, Bryan W. King, Christopher R. Kwiatkowski, Joël Lelièvre, Yue Li, Xiaorong Liu, Quinn Lu, Ruth Lehr, Alfonso Mendoza-Losana, John Martin, Lynn McCloskey, Patti McCormick, Heather P. O’Keefe, Thomas O’Keeffe, Christina Pao, Christopher B. Phelps, Hongwei Qi, Keith Rafferty, Genaro S. Scavello, Matt S. Steiginga, Flora S. Sundersingh, Sharon M. Sweitzer, Lawrence M. Szewczuk, Amy Taylor, May Fern Toh, Juan Wang, Minghui Wang, Devan J. Wilkins, Bing Xia, Gang Yao, Jean Zhang, Jingye Zhou, Christine P. Donahue, Jeffrey A. Messer, David Holmes, Christopher C. Arico-Muendel, Andrew J. Pope, Jeffrey W. Gross, Ghotas Evindar. Prioritizing multiple therapeutic targets in parallel using automated DNA-encoded library screening. Nature Communications 2017, 8 (1) https://doi.org/10.1038/ncomms16081
    76. Amalia M. Estévez, Felix Gruber, Alexander L. Satz, Rainer E. Martin, Hans Peter Wessel. A carbohydrate-derived trifunctional scaffold for DNA-encoded libraries. Tetrahedron: Asymmetry 2017, 28 (6) , 837-842. https://doi.org/10.1016/j.tetasy.2017.04.007
    77. John W. Cuozzo, Paolo A. Centrella, Diana Gikunju, Sevan Habeshian, Christopher D. Hupp, Anthony D. Keefe, Eric A. Sigel, Holly H. Soutter, Heather A. Thomson, Ying Zhang, Matthew A. Clark. Discovery of a Potent BTK Inhibitor with a Novel Binding Mode by Using Parallel Selections with a DNA‐Encoded Chemical Library. ChemBioChem 2017, 18 (9) , 864-871. https://doi.org/10.1002/cbic.201600573
    78. Fiona E. Watt, Malvika Gulati. New Drug Treatments for Osteoarthritis: What Is on the Horizon?. European Medical Journal 2017, , 50-58. https://doi.org/10.33590/emj/10314447
    79. Markus G. Rudolph. Leitmolekülsuche mit DNA-codierten Bibliotheken. BIOspektrum 2017, 23 (2) , 142-145. https://doi.org/10.1007/s12268-017-0778-4
    80. Bingbing Shi, Yu Zhou, Yiran Huang, Jianfu Zhang, Xiaoyu Li. Recent advances on the encoding and selection methods of DNA-encoded chemical library. Bioorganic & Medicinal Chemistry Letters 2017, 27 (3) , 361-369. https://doi.org/10.1016/j.bmcl.2016.12.025
    81. Robert A. Goodnow, Christoph E. Dumelin, Anthony D. Keefe. DNA-encoded chemistry: enabling the deeper sampling of chemical space. Nature Reviews Drug Discovery 2017, 16 (2) , 131-147. https://doi.org/10.1038/nrd.2016.213
    82. Holly H. Soutter, Paolo Centrella, Matthew A. Clark, John W. Cuozzo, Christoph E. Dumelin, Marie-Aude Guie, Sevan Habeshian, Anthony D. Keefe, Kaitlyn M. Kennedy, Eric A. Sigel, Dawn M. Troast, Ying Zhang, Andrew D. Ferguson, Gareth Davies, Eleanor R. Stead, Jason Breed, Prashanti Madhavapeddi, Jon A. Read. Discovery of cofactor-specific, bactericidal Mycobacterium tuberculosis InhA inhibitors using DNA-encoded library technology. Proceedings of the National Academy of Sciences 2016, 113 (49) https://doi.org/10.1073/pnas.1610978113
    83. Gunther Zimmermann, Dario Neri. DNA-encoded chemical libraries: foundations and applications in lead discovery. Drug Discovery Today 2016, 21 (11) , 1828-1834. https://doi.org/10.1016/j.drudis.2016.07.013
    84. Christopher C. Arico-Muendel. From haystack to needle: finding value with DNA encoded library technology at GSK. MedChemComm 2016, 7 (10) , 1898-1909. https://doi.org/10.1039/C6MD00341A
    85. Casey J. Krusemark, Nicolas P. Tilmans, Patrick O. Brown, Pehr B. Harbury, . Directed Chemical Evolution with an Outsized Genetic Code. PLOS ONE 2016, 11 (8) , e0154765. https://doi.org/10.1371/journal.pone.0154765
    86. Xia Tian, Gregory S. Basarab, Nidhal Selmi, Thierry Kogej, Ying Zhang, Matthew Clark, Robert A. Goodnow Jr.. Development and design of the tertiary amino effect reaction for DNA-encoded library synthesis. MedChemComm 2016, 7 (7) , 1316-1322. https://doi.org/10.1039/C6MD00088F
    87. Oliv Eidam, Alexander L. Satz. Analysis of the productivity of DNA encoded libraries. MedChemComm 2016, 7 (7) , 1323-1331. https://doi.org/10.1039/C6MD00221H
    88. Quanbo Ji, Xiaojie Xu, Qiang Zhang, Lei Kang, Yameng Xu, Ke Zhang, Ling Li, Yingchun Liang, Tian Hong, Qinong Ye, Yan Wang. The IL-1β/AP-1/miR-30a/ADAMTS-5 axis regulates cartilage matrix degradation in human osteoarthritis. Journal of Molecular Medicine 2016, 94 (7) , 771-785. https://doi.org/10.1007/s00109-016-1418-z
    89. Dirk Weigelt, Ismet Dorange. Lead Generation Based on Compound Collection Screening. 2016, 93-132. https://doi.org/10.1002/9783527677047.ch05
    90. Jinqiao Wan, Dengfeng Dou, Hongmei Song, Xian‐Hui Wu Xuemin Cheng, Jin Li. Lead Generation for Challenging Targets. 2016, 259-306. https://doi.org/10.1002/9783527677047.ch10
    91. Stefan Geschwindner. Affinity‐Based Screening Methodologies and Their Application in the Hit‐to‐Lead Phase. 2016, 401-424. https://doi.org/10.1002/9783527677047.ch14
    92. Aya Shiraishi, Satsuki Mochizuki, Akira Miyakoshi, Kanehisa Kojoh, Yasunori Okada. Development of human neutralizing antibody to ADAMTS4 (aggrecanase-1) and ADAMTS5 (aggrecanase-2). Biochemical and Biophysical Research Communications 2016, 469 (1) , 62-69. https://doi.org/10.1016/j.bbrc.2015.11.072
    93. Alexander Litovchick, Christoph E. Dumelin, Sevan Habeshian, Diana Gikunju, Marie-Aude Guié, Paolo Centrella, Ying Zhang, Eric A. Sigel, John W. Cuozzo, Anthony D. Keefe, Matthew A. Clark. Encoded Library Synthesis Using Chemical Ligation and the Discovery of sEH Inhibitors from a 334-Million Member Library. Scientific Reports 2015, 5 (1) https://doi.org/10.1038/srep10916
    94. J. Larkin, T.A. Lohr, L. Elefante, J. Shearin, R. Matico, J.-L. Su, Y. Xue, F. Liu, C. Genell, R.E. Miller, P.B. Tran, A.-M. Malfait, C.C. Maier, C.J. Matheny. Translational development of an ADAMTS-5 antibody for osteoarthritis disease modification. Osteoarthritis and Cartilage 2015, 23 (8) , 1254-1266. https://doi.org/10.1016/j.joca.2015.02.778
    95. Edgar R. Wood, Randy Bledsoe, Jing Chai, Philias Daka, Hongfeng Deng, Yun Ding, Sarah Harris-Gurley, Luz Helena Kryn, Eldridge Nartey, James Nichols, Robert T. Nolte, Ninad Prabhu, Cecil Rise, Timothy Sheahan, J. Brad Shotwell, Danielle Smith, Vince Tai, J. David Taylor, Ginger Tomberlin, Liping Wang, Bruce Wisely, Shihyun You, Bing Xia, Hamilton Dickson. The Role of Phosphodiesterase 12 (PDE12) as a Negative Regulator of the Innate Immune Response and the Discovery of Antiviral Inhibitors. Journal of Biological Chemistry 2015, 290 (32) , 19681-19696. https://doi.org/10.1074/jbc.M115.653113
    96. Peter Blakskjaer, Tara Heitner, Nils Jakob Vest Hansen. Fidelity by design: Yoctoreactor and binder trap enrichment for small-molecule DNA-encoded libraries and drug discovery. Current Opinion in Chemical Biology 2015, 26 , 62-71. https://doi.org/10.1016/j.cbpa.2015.02.003
    97. Alix I Chan, Lynn M McGregor, David R Liu. Novel selection methods for DNA-encoded chemical libraries. Current Opinion in Chemical Biology 2015, 26 , 55-61. https://doi.org/10.1016/j.cbpa.2015.02.010
    98. Anthony D Keefe, Matthew A Clark, Christopher D Hupp, Alexander Litovchick, Ying Zhang. Chemical ligation methods for the tagging of DNA-encoded chemical libraries. Current Opinion in Chemical Biology 2015, 26 , 80-88. https://doi.org/10.1016/j.cbpa.2015.02.015
    99. Raphael M. Franzini, Torun Ekblad, Nan Zhong, Moreno Wichert, Willy Decurtins, Angela Nauer, Mauro Zimmermann, Florent Samain, Jörg Scheuermann, Peter J. Brown, Jonathan Hall, Susanne Gräslund, Herwig Schüler, Dario Neri. Identification of Structure–Activity Relationships from Screening a Structurally Compact DNA‐Encoded Chemical Library. Angewandte Chemie 2015, 127 (13) , 3999-4003. https://doi.org/10.1002/ange.201410736
    100. Raphael M. Franzini, Torun Ekblad, Nan Zhong, Moreno Wichert, Willy Decurtins, Angela Nauer, Mauro Zimmermann, Florent Samain, Jörg Scheuermann, Peter J. Brown, Jonathan Hall, Susanne Gräslund, Herwig Schüler, Dario Neri. Identification of Structure–Activity Relationships from Screening a Structurally Compact DNA‐Encoded Chemical Library. Angewandte Chemie International Edition 2015, 54 (13) , 3927-3931. https://doi.org/10.1002/anie.201410736
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    Cite this: J. Med. Chem. 2012, 55, 16, 7061–7079
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    Published August 14, 2012
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