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Intraresidue Distribution of Energy in Proteins
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    Intraresidue Distribution of Energy in Proteins
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    Dipartimento di Chimica “G. Ciamician” and Dipartimento di Biologia, Università di Bologna, via F. Selmi 2, 40126 Bologna, Italy, and BioDec Srl, via Fanin 48, 40127 Bologna, Italy
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    The Journal of Physical Chemistry B

    Cite this: J. Phys. Chem. B 2005, 109, 8, 3586–3593
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    https://doi.org/10.1021/jp0471756
    Published February 3, 2005
    Copyright © 2005 American Chemical Society

    Abstract

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    Boltzmann-like distributions appear in many properties and energy-related quantities of proteins. A few examples are hydrophobicity, various types of side-chain/side-chain interactions, proline isomerization, hydrogen bonds, internal cavities, interactions at the level of specific atom types, and the propensity of the φ/φ ratio. Here, we conjecture that the Boltzmann hypothesis also holds for the intraresidue energy distribution. We confirm the conjecture by calculating the energies of 41 672 residues of the structures of highly resolved proteins, where at least 12 out of 20 naturally occurring amino acids follow Boltzmann's law. We further examine the entire set of all residue energies and find that the convolution of the individual distributions gives a Poisson function, which is followed by ∼50% of individual proteins' structures.

    Copyright © 2005 American Chemical Society

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     Dipartimento di Chimica, Università di Bologna.

     Dipartimento di Biologia, Università di Bologna.

    §

     BioDec Srl.

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     Author to whom correspondence should be sent. E-mail:  [email protected].

    Cited By

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    This article is cited by 1 publications.

    1. Bruno Trebbi,, Francois Dehez,, Patrick W. Fowler, and, Francesco Zerbetto. Favorable Entropy of Aromatic Clusters in Thermophilic Proteins. The Journal of Physical Chemistry B 2005, 109 (38) , 18184-18188. https://doi.org/10.1021/jp052333u

    The Journal of Physical Chemistry B

    Cite this: J. Phys. Chem. B 2005, 109, 8, 3586–3593
    Click to copy citationCitation copied!
    https://doi.org/10.1021/jp0471756
    Published February 3, 2005
    Copyright © 2005 American Chemical Society

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