Intraresidue Distribution of Energy in ProteinsClick to copy article linkArticle link copied!
Abstract
Boltzmann-like distributions appear in many properties and energy-related quantities of proteins. A few examples are hydrophobicity, various types of side-chain/side-chain interactions, proline isomerization, hydrogen bonds, internal cavities, interactions at the level of specific atom types, and the propensity of the φ/φ ratio. Here, we conjecture that the Boltzmann hypothesis also holds for the intraresidue energy distribution. We confirm the conjecture by calculating the energies of 41 672 residues of the structures of highly resolved proteins, where at least 12 out of 20 naturally occurring amino acids follow Boltzmann's law. We further examine the entire set of all residue energies and find that the convolution of the individual distributions gives a Poisson function, which is followed by ∼50% of individual proteins' structures.
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Dipartimento di Chimica, Università di Bologna.
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Dipartimento di Biologia, Università di Bologna.
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BioDec Srl.
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Author to whom correspondence should be sent. E-mail: [email protected].
Cited By
This article is cited by 1 publications.
- Bruno Trebbi,, Francois Dehez,, Patrick W. Fowler, and, Francesco Zerbetto. Favorable Entropy of Aromatic Clusters in Thermophilic Proteins. The Journal of Physical Chemistry B 2005, 109
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, 18184-18188. https://doi.org/10.1021/jp052333u
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