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Mapping the Oxygens in the Oxygen-Evolving Complex of Photosystem II by Their Nucleophilicity Using Quantum Descriptors
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    Biomolecular Systems

    Mapping the Oxygens in the Oxygen-Evolving Complex of Photosystem II by Their Nucleophilicity Using Quantum Descriptors
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    • Muhamed Amin*
      Muhamed Amin
      Laboratory of Computational Biology, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, United States
      Department of Sciences, University College Groningen, University of Groningen, 9718 BG Groningen, The Netherlands
      *Email: [email protected]
      More by Muhamed Amin
    • Divya Kaur
      Divya Kaur
      Department of Chemistry, Brock University, 500 Glenridge Avenue, St. Catharines, Ontario, Canada L2S 3A1
      More by Divya Kaur
    • Gary W. Brudvig
      Gary W. Brudvig
      Department of Chemistry, Yale University, New Haven, Connecticut 06520-8107, United States
    • Bernard R. Brooks
      Bernard R. Brooks
      Laboratory of Computational Biology, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, United States
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    Journal of Chemical Theory and Computation

    Cite this: J. Chem. Theory Comput. 2024, 20, 3, 1414–1422
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    https://doi.org/10.1021/acs.jctc.3c00926
    Published February 2, 2024
    Copyright © 2024 American Chemical Society

    Abstract

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    The oxygen-evolving complex (OEC) of Photosystem II catalyzes the water-splitting reaction using solar energy. Thus, understanding the reaction mechanism will inspire the design of biomimetic artificial catalysts that convert solar energy to chemical energy. Conceptual Density Functional Theory (CDFT) focuses on understanding the reactivity of molecules and the atomic contribution to the overall nucleophilicity and electrophilicity of the molecule using quantum descriptors. However, this method has not been applied to the OEC before. Here, we use Fukui functions and the dual descriptor to provide quantitative measures of the nucleophilicity and electrophilicity of oxygens in the OEC for different models in different S states. Our results show that the μ-oxo bridges connected to terminal Mn4 are nucleophilic, and those in the cube formed by Mn1, Mn2, and Mn3 are mostly electrophilic. The dual descriptors of the bridging oxygens in the OEC showed a similar reactivity to that of bridging oxygens in Mn model compounds. However, the terminal water W1, which is bound to Mn4, showed very strong reactivity in some of the S3 models. Thus, our calculations support the model that proposes the formation of the O2 molecule through nucleophilic attack by a terminal water.

    Copyright © 2024 American Chemical Society

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    Supporting Information

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.jctc.3c00926.

    • Charges and the quantum descriptors of some models, Δf of the S3 model using the SDD basis sets, and the Δf for the two S0 models (PDF)

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    Journal of Chemical Theory and Computation

    Cite this: J. Chem. Theory Comput. 2024, 20, 3, 1414–1422
    Click to copy citationCitation copied!
    https://doi.org/10.1021/acs.jctc.3c00926
    Published February 2, 2024
    Copyright © 2024 American Chemical Society

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