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Propanediurea-Based Molecular Clips Bind Halide Anions: An Insight into the Mechanism of Cucurbituril Formation

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† ‡ Department of Chemistry and RECETOX, Masaryk University, Kamenice 5, 62500 Brno, Czech Republic
*E-mail for V.S.: [email protected]
Cite this: J. Org. Chem. 2016, 81, 19, 8906–8910
Publication Date (Web):September 13, 2016
https://doi.org/10.1021/acs.joc.6b01602
Copyright © 2016 American Chemical Society

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    Abstract

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    The synthesis and supramolecular properties of the first methylene-bridged propanediurea-based dimers are described. These dimers, bearing an aromatic sidewall, have the shape of molecular clips. Unlike glycoluril-based dimers, these clips neither dimerize nor accept any organic guests, due to their small cavities. Both propanediurea- and glycoluril-based dimers bind halide anions on the convex side of the molecules, even in highly polar organic solvents. This observation brings new insights into the mechanism of cucurbituril formation.

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    The Supporting Information is available free of charge on the ACS Publications website at DOI: 10.1021/acs.joc.6b01602.

    • 1H NMR spectra for all compounds, NMR titration data, and X-ray and DFT calculation details (PDF)

    • X-ray crystallographic data for compound 6 (CIF)

    • X-ray crystallographic data for compound 7 (CIF)

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    Cited By

    This article is cited by 6 publications.

    1. Steve Scheiner . Assembly of Effective Halide Receptors from Components. Comparing Hydrogen, Halogen, and Tetrel Bonds. The Journal of Physical Chemistry A 2017, 121 (18) , 3606-3615. https://doi.org/10.1021/acs.jpca.7b02305
    2. Weijian Xue, Huiqian Li, Xiangyu Ling, Ying Zhang, Yang Liu, Bing Zhao, Yanbing Yin, Xiangfeng Guo. Self‐Assembly of Water‐Soluble Glycoluril Molecular Clips Driven by Naphthalene‐Naphthalene Interaction. ChemistrySelect 2023, 8 (35) https://doi.org/10.1002/slct.202302271
    3. Dennis Larsen, Sophie R. Beeren. Tuning the Outcome of Enzyme‐Mediated Dynamic Cyclodextrin Libraries to Enhance Template Effects. Chemistry – A European Journal 2020, 26 (48) , 11032-11038. https://doi.org/10.1002/chem.202001076
    4. Philip A. Gale, Ethan N.W. Howe, Xin Wu, Michael J. Spooner. Anion receptor chemistry: Highlights from 2016. Coordination Chemistry Reviews 2018, 375 , 333-372. https://doi.org/10.1016/j.ccr.2018.02.005
    5. Sandra Kaabel, Riina Aav. Templating Effects in the Dynamic Chemistry of Cucurbiturils and Hemicucurbiturils. Israel Journal of Chemistry 2018, 58 (3-4) , 296-313. https://doi.org/10.1002/ijch.201700106
    6. Katharina Gratzer, Vincent Diemer, Jonathan Clayden. Signal transduction in oligoamide foldamers by selective non-covalent binding of chiral phosphates at a urea binding site. Organic & Biomolecular Chemistry 2017, 15 (17) , 3585-3589. https://doi.org/10.1039/C7OB00660H

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