Article

In Vitro Selection of ATP-Binding Receptors Using a Ribonucleopeptide Complex

Contribution from the Institute of Advanced Energy, Kyoto University, and PRESTO, Japan Science and Technology Corporation, Uji, Kyoto 611-0011, Japan
J. Am. Chem. Soc., 2002, 124 (17), pp 4617–4622
DOI: 10.1021/ja016569x
Publication Date (Web): April 6, 2002
Copyright © 2002 American Chemical Society

Abstract

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A recently described three-dimensional structure of the ribosome provides a sense of remarkable diversity of RNA−protein complexes. We have designed a new class of scaffold for artificial receptors, in which a short peptide and RNA with a randomized nucleotide region form a stable and specific complex. The randomized nucleotide region was placed next to the HIV-1 Rev response element to enable the formation of “ribonucleopeptide” pools in the presence of the Rev peptide. In vitro selection of RNA oligonucleotides from the randomized pool afforded a ribonucleopeptide receptor specific for ATP. The ATP-binding ribonucleopeptide did not share the known consensus nucleotide sequence for ATP aptamers and completely lost its ATP-binding ability in the absence of the Rev peptide. The ATP-binding activity of the ribonucleopeptide was increased by a substitution of the N-terminal amino acid of the Rev peptide. These results demonstrate directly that the peptide is incorporated in the functional structure of RNA and suggest that amino acids outside the RNA-binding region of the peptide modulate the ATP-binding of ribonucleopeptide. Our approach would provide an alternative strategy for the design of “tailor-made” ribonucleopeptide receptors and enzymes.

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Article Views: 424 Times
Received 10 July 2001
Published online 6 April 2002
Published in print 1 May 2002
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