Article

Electronic Structure of xDNA

Center for Nanophase Materials Sciences and Computer Science and Mathematics Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, Tennessee 37831-6494
J. Phys. Chem. B, 2007, 111 (30), pp 9057–9061
DOI: 10.1021/jp0729056
Publication Date (Web): July 26, 2007
Copyright © 2007 American Chemical Society

Abstract

xDNA is an artificial duplex made of natural and benzo-homologated bases. The latter can be seen as a fusion between benzene and a natural base. We have used two different ab initio techniques, one based on B3LYP and a Gaussian expansion of the wave functions, and the other on GGA and plane-waves, to investigate the electronic properties of an xDNA duplex and a natural one with an analogous sequence. The calculations were performed in dry conditions, i.e., H atoms were used to neutralize the charge. It is found that the HOMO−LUMO gap of xDNA is about 0.5 eV smaller than that of B-DNA, independent of the technique used. The π−π* gap of xDNA is 1.3 or 1.0 eV smaller than that of B-DNA, depending on whether one uses B3LYP/6-31G or GGA/plane-waves, respectively. An analysis of how saturation changes the electronic properties of the nucleotide pairs that make up these duplexes suggests that different saturation schemes significantly affect the HOMO−LUMO gap value of xDNA and B-DNA. The same is not true for the π−π* gap. That xDNA has a smaller π−π* gap than B-DNA suggests that xDNA could be a plausible candidate for molecular-wire applications.

Citation data is made available by participants in Crossref's Cited-by Linking service. For a more comprehensive list of citations to this article, users are encouraged to perform a search inSciFinder.

Explore by:

Metrics

Article Views: 297 Times
Received 13 April 2007
Published online 26 July 2007
Published in print 1 August 2007
+
Altmetric Logo Icon More Article Metrics

This website uses cookies to improve your user experience. By continuing to use the site, you are accepting our use of cookies. Read the ACS privacy policy.

CONTINUE