Effect of Hydration on the Hydrogen Abstraction Reaction by HO in DMS and its Oxidation Products†Click to copy article linkArticle link copied!
Abstract
The gas-phase hydrogen abstraction reaction between the HO radical and sulfur containing species in the absence and presence of a single water molecule is investigated theoretically. The sulfur containing species dimethyl sulfide, dimethyl sulfoxide, and dimethyl sulfone are considered. The calculations are carried out with a mixture of density function theory and second order Møller−Plesset perturbation theory. We find that the energy of the hydrated transition state structures for the hydrogen abstraction reactions is lowered compared to that of the nonhydrated ones. Furthermore, the energy difference between the reaction complex and the transition state is reduced when one water molecule is added. The atmospheric abundance of the different hydrated complexes is estimated in order to assess the relative importance of the possible reaction mechanisms.
Cited By
This article is cited by 56 publications.
- Parandaman Arathala, Rabi A. Musah. Thermochemistry and Kinetics of the Atmospheric Oxidation Reactions of Propanesulfinyl Chloride Initiated by OH Radicals: A Computational Approach. The Journal of Physical Chemistry A 2022, 126
(26)
, 4264-4276. https://doi.org/10.1021/acs.jpca.2c01203
- Junyao Li, Narcisse T. Tsona, Shanshan Tang, Xiuhui Zhang, Lin Du. Influence of Water on the Gas-Phase Reaction of Dimethyl Sulfide with BrO in the Marine Boundary Layer. ACS Omega 2021, 6
(3)
, 2410-2419. https://doi.org/10.1021/acsomega.0c05945
- Alexander Kjaersgaard, Emil Vogt, Anne S. Hansen, Henrik G. Kjaergaard. Room Temperature Gas-Phase Detection and Gibbs Energies of Water Amine Bimolecular Complex Formation. The Journal of Physical Chemistry A 2020, 124
(35)
, 7113-7122. https://doi.org/10.1021/acs.jpca.0c07399
- Jonathan
R. Church, Rex T. Skodje. Double Hydrogen-Atom Exchange Reactions of HX (X = F, Cl, Br, I) with HO2. The Journal of Physical Chemistry A 2018, 122
(24)
, 5251-5260. https://doi.org/10.1021/acs.jpca.8b01602
- Anne S. Hansen and Henrik G. Kjaergaard . Dimethyl Sulfoxide Complexes Detected at Ambient Conditions. The Journal of Physical Chemistry A 2017, 121
(32)
, 6046-6053. https://doi.org/10.1021/acs.jpca.7b06102
- Jonathan R. Church and Rex T. Skodje . Reaction Kinetics of HBr with HO2: A New Channel for Isotope Scrambling Reactions. The Journal of Physical Chemistry A 2016, 120
(43)
, 8503-8511. https://doi.org/10.1021/acs.jpca.6b07215
- Weichao Zhang, Benni Du, and Zhenglong Qin . Catalytic Effect of Water, Formic Acid, or Sulfuric Acid on the Reaction of Formaldehyde with OH Radicals. The Journal of Physical Chemistry A 2014, 118
(26)
, 4797-4807. https://doi.org/10.1021/jp502886p
- Nicolai Bork, Lin Du, and Henrik G. Kjaergaard . Identification and Characterization of the HCl–DMS Gas Phase Molecular Complex via Infrared Spectroscopy and Electronic Structure Calculations. The Journal of Physical Chemistry A 2014, 118
(8)
, 1384-1389. https://doi.org/10.1021/jp411567x
- Josep M. Anglada, Gerald J. Hoffman, Lyudmila V. Slipchenko, Marilia M.Costa, Manuel F. Ruiz-López, and Joseph S. Francisco . Atmospheric Significance of Water Clusters and Ozone–Water Complexes. The Journal of Physical Chemistry A 2013, 117
(40)
, 10381-10396. https://doi.org/10.1021/jp407282c
- Jonas Elm, Merete Bilde, and Kurt V. Mikkelsen . Influence of Nucleation Precursors on the Reaction Kinetics of Methanol with the OH Radical. The Journal of Physical Chemistry A 2013, 117
(30)
, 6695-6701. https://doi.org/10.1021/jp4051269
- Bo Long, Xing-Feng Tan, Chun-Ran Chang, Wei-Xiong Zhao, Zheng-Wen Long, Da-Sen Ren, and Wei-Jun Zhang . Theoretical Studies on Gas-Phase Reactions of Sulfuric Acid Catalyzed Hydrolysis of Formaldehyde and Formaldehyde with Sulfuric Acid and H2SO4···H2O Complex. The Journal of Physical Chemistry A 2013, 117
(24)
, 5106-5116. https://doi.org/10.1021/jp312844z
- Robert J. Buszek, Miquel Torrent-Sucarrat, Josep M. Anglada, and Joseph S. Francisco . Effects of a Single Water Molecule on the OH + H2O2 Reaction. The Journal of Physical Chemistry A 2012, 116
(24)
, 5821-5829. https://doi.org/10.1021/jp2077825
- Jonas Elm, Merete Bilde, and Kurt V. Mikkelsen . Assessment of Density Functional Theory in Predicting Structures and Free Energies of Reaction of Atmospheric Prenucleation Clusters. Journal of Chemical Theory and Computation 2012, 8
(6)
, 2071-2077. https://doi.org/10.1021/ct300192p
- Robert J. Buszek, John R. Barker, and Joseph S. Francisco . Water Effect on the OH + HCl Reaction. The Journal of Physical Chemistry A 2012, 116
(19)
, 4712-4719. https://doi.org/10.1021/jp3025107
- Theo Kurtén, Joseph R. Lane, Solvejg Jørgensen, and Henrik G. Kjaergaard . A Computational Study of the Oxidation of SO2 to SO3 by Gas-Phase Organic Oxidants. The Journal of Physical Chemistry A 2011, 115
(31)
, 8669-8681. https://doi.org/10.1021/jp203907d
- Bo Long, Wei-jun Zhang, Xing-feng Tan, Zheng-wen Long, Yi-bo Wang, and Da-sen Ren . Theoretical Study on the Gas Phase Reaction of Sulfuric Acid with Hydroxyl Radical in the Presence of Water. The Journal of Physical Chemistry A 2011, 115
(8)
, 1350-1357. https://doi.org/10.1021/jp107550w
- Zeb C. Kramer, Kaito Takahashi, and Rex T. Skodje . Water Catalysis and Anticatalysis in Photochemical Reactions: Observation of a Delayed Threshold Effect in the Reaction Quantum Yield. Journal of the American Chemical Society 2010, 132
(43)
, 15154-15157. https://doi.org/10.1021/ja107335t
- Irena Efremenko, Elena Poverenov, Jan M. L. Martin, and David Milstein. DFT Study of the Structure and Reactivity of the Terminal Pt(IV)-Oxo Complex Bearing No Electron-Withdrawing Ligands. Journal of the American Chemical Society 2010, 132
(42)
, 14886-14900. https://doi.org/10.1021/ja105197x
- Jiaxin Liu, Yong Zhao, Xueqi Lian, Dongdong Li, Xueling Zhang, Jun Chen, Bin Deng, Xiaobing Lan, Youxiang Shao. Unveiling the Influence of Water Molecules for NF3 Removal by the Reaction of NF3 with OH: A DFT Study. Molecules 2024, 29
(17)
, 4033. https://doi.org/10.3390/molecules29174033
- Peng Zhang, Lu Ma, Meilian Zhao, Yuxi Sun, Wanping Chen, Yunju Zhang. The influence of a single water molecule on the reaction of BrO + HO2. Scientific Reports 2023, 13
(1)
https://doi.org/10.1038/s41598-023-28783-x
- Yunju Zhang, Meilian Zhao, Shuxin Liu. The influence of a single water molecule on the reaction of IO + HONO. Structural Chemistry 2023, 34
(2)
, 565-575. https://doi.org/10.1007/s11224-022-01972-6
- Lydia Rhyman, Edmond P. F. Lee, Ponnadurai Ramasami, John M. Dyke. A study of the thermodynamics and mechanisms of the atmospherically relevant reaction dimethyl sulphide (DMS) with atomic chlorine (Cl) in the absence and presence of water, using electronic structure methods. Physical Chemistry Chemical Physics 2023, 25
(6)
, 4780-4793. https://doi.org/10.1039/D2CP05814F
- Yunju Zhang, Yongguo Liu, Meilian Zhao, Yuxi Sun, Shuxin Liu. The influence of (H
2
O)
1–2
in the HOBr + HO
2
gas-phase reaction. RSC Advances 2022, 12
(55)
, 36028-36037. https://doi.org/10.1039/D2RA06204F
- Hamed Douroudgari, Maryam Seyed Sharifi, Morteza Vahedpour. Impact of a single water molecule on the atmospheric oxidation of thiophene by hydroperoxyl radical. Scientific Reports 2022, 12
(1)
https://doi.org/10.1038/s41598-022-22831-8
- Christopher M. Jernigan, Charles H. Fite, Luc Vereecken, Max B. Berkelhammer, Andrew W. Rollins, Pamela S. Rickly, Anna Novelli, Domenico Taraborrelli, Christopher D. Holmes, Timothy H. Bertram. Efficient Production of Carbonyl Sulfide in the Low‐NO
x
Oxidation of Dimethyl Sulfide. Geophysical Research Letters 2022, 49
(3)
https://doi.org/10.1029/2021GL096838
- Parandaman Arathala, Mark Katz, Rabi A. Musah. Reaction mechanism, energetics, and kinetics of the water-assisted thioformaldehyde + ˙OH reaction and the fate of its product radical under tropospheric conditions. Physical Chemistry Chemical Physics 2020, 22
(18)
, 10027-10042. https://doi.org/10.1039/D0CP00570C
- Guochun Lv, Chenxi Zhang, Xiaomin Sun. Understanding the oxidation mechanism of methanesulfinic acid by ozone in the atmosphere. Scientific Reports 2019, 9
(1)
https://doi.org/10.1038/s41598-018-36405-0
- Matthew Butawan, Marie van der Merwe, Rodney L. Benjamin, Richard J. Bloomer. Methylsulfonylmethane: Antiinflammatory Actions and Usage for Arthritic Conditions. 2019, 553-573. https://doi.org/10.1016/B978-0-12-813820-5.00032-5
- Junyao Li, Narcisse Tsona, Lin Du. The Role of (H2O)1-2 in the CH2O + ClO Gas-Phase Reaction. Molecules 2018, 23
(9)
, 2240. https://doi.org/10.3390/molecules23092240
- Benni Du, Weichao Zhang. Quantum chemical study on the role of water in the reaction of singlet methoxysulfonyl nitrene CH3OS(O)2N. Chemical Physics Letters 2018, 706 , 548-552. https://doi.org/10.1016/j.cplett.2018.07.007
- Junyao Li, Narcisse T. Tsona, Lin Du. Effect of a single water molecule on the HO
2
+ ClO reaction. Physical Chemistry Chemical Physics 2018, 20
(16)
, 10650-10659. https://doi.org/10.1039/C7CP05008A
- Matthew Butawan, Rodney Benjamin, Richard Bloomer. Methylsulfonylmethane: Applications and Safety of a Novel Dietary Supplement. Nutrients 2017, 9
(3)
, 290. https://doi.org/10.3390/nu9030290
- Tian-lei Zhang, Peng Zhang, Zi-long Jia, Kai Zhang, Xin-yi Miao, Zhu-qing Wang. Effect of a single water molecule on the formations of H
2
O
2
+ ClO from HO
2
+ HOCl reaction under tropospheric conditions. Molecular Physics 2016, 114
(14)
, 2132-2143. https://doi.org/10.1080/00268976.2016.1187771
- Tianlei Zhang, Chen Yang, Xukai Feng, Jiaxin Kang, Liang Song, Yousong Lu, Zhiyin Wang, Qiong Xu, Wenliang Wang, Zhuqing Wang. The catalytic effect of water, water dimers and water trimers on H
2
S +
3
O
2
formation by the HO
2
+ HS reaction under tropospheric conditions. Physical Chemistry Chemical Physics 2016, 18
(26)
, 17414-17427. https://doi.org/10.1039/C6CP00654J
- Benni Du, Weichao Zhang. The effect of (H2O)n (n=1–2) or H2S on the hydrogen abstraction reaction of H2S by OH radicals in the atmosphere. Computational and Theoretical Chemistry 2015, 1069 , 77-85. https://doi.org/10.1016/j.comptc.2015.07.015
- António J. C. Varandas. Odd-hydrogen: An account on electronic structure, kinetics, and role of water in mediating reactions with atmospheric ozone. Just a catalyst or far beyond?. International Journal of Quantum Chemistry 2014, 114
(20)
, 1327-1349. https://doi.org/10.1002/qua.24580
- Benni Du, Weichao Zhang. Kinetics and mechanism of the water-assisted reaction of NCO with CH3OH: A quantum chemical study. Computational and Theoretical Chemistry 2014, 1044 , 55-61. https://doi.org/10.1016/j.comptc.2014.06.011
- Anne S. Hansen, Lin Du, Henrik G. Kjaergaard. The effect of fluorine substitution in alcohol–amine complexes. Phys. Chem. Chem. Phys. 2014, 16
(41)
, 22882-22891. https://doi.org/10.1039/C4CP02500H
- Cao Jia, Wenliang Wang, Tianlei Zhang, Loujun Gao, Feng Fu, Danjun Wang. Impact of Water Molecules on the Isomerization of CH
3
S(OH)CH
2
to CH
3
S(O)CH
3
: A Computational Investigation. Chinese Journal of Chemistry 2013, 31
(10)
, 1341-1347. https://doi.org/10.1002/cjoc.201300410
- Ponnadurai Ramasami, Hassan H. Abdallah, Edet F. Archibong, Paul Blowers, Thomas A. Ford, Rita Kakkar, Zhigang Shuai, Henry F. Schaefer. Assessment of theoretical methods for the study of hydrogen
abstraction kinetics of global warming gas species during their degradation and
byproduct formation (IUPAC Technical Report). Pure and Applied Chemistry 2013, 85
(9)
, 1901-1918. https://doi.org/10.1351/pac-rep-10-02-38
- Wen-xue Mao, Zheng-wen Long, Bo Long, Yi-bo Wang, Chao-yun Long, Shui-jie Qin. Theoretical study on the gas phase reaction of dimethyl sulfoxide with atomic chlorine in the presence of water. Structural Chemistry 2013, 24
(2)
, 383-392. https://doi.org/10.1007/s11224-012-0086-z
- Solvejg Jørgensen, Camilla Jensen, Henrik G. Kjaergaard, Josep M. Anglada. The gas-phase reaction of methane sulfonic acid with the hydroxyl radical without and with water vapor. Physical Chemistry Chemical Physics 2013, 15
(14)
, 5140. https://doi.org/10.1039/c3cp44034f
- Jonas Elm, Solvejg Jørgensen, Merete Bilde, Kurt V. Mikkelsen. Ambient reaction kinetics of atmospheric oxygenated organics with the OH radical: a computational methodology study. Physical Chemistry Chemical Physics 2013, 15
(24)
, 9636. https://doi.org/10.1039/c3cp50192b
- Weichao Zhang, Dongju Zhang. The OH-initiated atmospheric oxidation of divinyl sulfoxide: A theoretical investigation on the reaction mechanism. Chemical Physics Letters 2012, 543 , 61-67. https://doi.org/10.1016/j.cplett.2012.06.067
- Tianlei Zhang, Guona Li, Wenliang Wang, Yongmei Du, Chunying Li, Jian Lü. Theoretical studies on atmospheric reactions of CH2FO2 with HO2 and HO2⋅H2O complex. Computational and Theoretical Chemistry 2012, 991 , 13-21. https://doi.org/10.1016/j.comptc.2012.03.016
- Zeb C. Kramer, Kaito Takahashi, Veronica Vaida, Rex T. Skodje. Will water act as a photocatalyst for cluster phase chemical reactions? Vibrational overtone-induced dehydration reaction of methanediol. The Journal of Chemical Physics 2012, 136
(16)
https://doi.org/10.1063/1.4704767
- Ditte Linde Thomsen, Theo Kurtén, Solvejg Jørgensen, Timothy J. Wallington, Signe Bang Baggesen, Cecilie Aalling, Henrik G. Kjaergaard. On the possible catalysis by single water molecules of gas-phase hydrogen abstraction reactions by OH radicals. Physical Chemistry Chemical Physics 2012, 14
(37)
, 12992. https://doi.org/10.1039/c2cp40795g
- Martta Toivola, Theo Kurtén, Ismael K. Ortega, Markku Sundberg, Ville Loukonen, Agílio Pádua, Hanna Vehkamäki. Quantum chemical studies on peroxodisulfuric acid–sulfuric acid–water clusters. Computational and Theoretical Chemistry 2011, 967
(2-3)
, 219-225. https://doi.org/10.1016/j.comptc.2011.04.023
- Bo Long, Wei-jun Zhang, Zheng-wen Long. Theoretical Study on Impact of Single Water Molecule on OH+O3 Reaction. Chinese Journal of Chemical Physics 2011, 24
(4)
, 419-424. https://doi.org/10.1088/1674-0068/24/04/419-424
- Juan M. RamíRez‐Anguita, àngels González‐Lafont, José M. Lluch. Variational transition‐state theory study of the rate constant of the DMS·OH scavenging reaction by O
2. Journal of Computational Chemistry 2011, 32
(10)
, 2104-2118. https://doi.org/10.1002/jcc.21793
- Veronica Vaida. Perspective: Water cluster mediated atmospheric chemistry. The Journal of Chemical Physics 2011, 135
(2)
https://doi.org/10.1063/1.3608919
- Robert J. Buszek, Joseph S. Francisco, Josep M. Anglada. Water effects on atmospheric reactions. International Reviews in Physical Chemistry 2011, 30
(3)
, 335-369. https://doi.org/10.1080/0144235X.2011.634128
- Liming Wang, Aili Tang. Oxidation mechanisms of dimethyl selenide and selenoxide in the atmosphere initiated by OH radical. A theoretical study. Chemical Physics 2011, 382
(1-3)
, 98-103. https://doi.org/10.1016/j.chemphys.2011.03.006
- Tianlei Zhang, Wenliang Wang, Pei Zhang, Jian Lü, Yue Zhang. Water-catalyzed gas-phase hydrogen abstraction reactions of CH3O2 and HO2 with HO2: a computational investigation. Physical Chemistry Chemical Physics 2011, 13
(46)
, 20794. https://doi.org/10.1039/c1cp21563a
- Javier Gonzalez, Josep M. Anglada. Gas Phase Reaction of Nitric Acid with Hydroxyl Radical without and with Water. A Theoretical Investigation. The Journal of Physical Chemistry A 2010, 114
(34)
, 9151-9162. https://doi.org/10.1021/jp102935d
- Theo Kurtén, Joseph R. Lane, Solvejg Jørgensen, Henrik G. Kjaergaard. Nitrate radical addition–elimination reactions of atmospherically relevant sulfur-containing molecules. Physical Chemistry Chemical Physics 2010, 12
(39)
, 12833. https://doi.org/10.1039/c0cp00383b
Article Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.
Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.
The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated.