Infrared Laser Spectroscopy of Imidazole Complexes in Helium Nanodroplets: Monomer, Dimer, and Binary Water ComplexesClick to copy article linkArticle link copied!
Abstract
Infrared laser spectroscopy has been used to characterize imidazole (IM), imidazole dimer (IMD), and imidazole−water (IMW) binary systems formed in helium nanodroplets. The experimental results are compared with ab initio calculations reported here. Vibrational transition moment angles provide conclusive assignments for the various complexes studied here, including IM, one isomer of IMD, and two isomers of the IMW binary complexes.
*
To whom correspondence should be addressed. E-mail: [email protected].
†
Deceased November 6, 2005.
Cited By
This article is cited by 45 publications.
- Anna D. Skitnevskaya, Kirill Gokhberg, Alexander B. Trofimov, Emma K. Grigoricheva, Alexander I. Kuleff, Lorenz S. Cederbaum. Two-Sided Impact of Water on the Relaxation of Inner-Valence Vacancies of Biologically Relevant Molecules. The Journal of Physical Chemistry Letters 2023, 14
(6)
, 1418-1426. https://doi.org/10.1021/acs.jpclett.2c03654
- Anna Martinelli, José M. Otero-Mato, Mounesha N. Garaga, Khalid Elamin, Seikh Mohammad Habibur Rahman, Josef W. Zwanziger, Ulrike Werner-Zwanziger, Luis M. Varela. A New Solid-State Proton Conductor: The Salt Hydrate Based on Imidazolium and 12-Tungstophosphate. Journal of the American Chemical Society 2021, 143
(34)
, 13895-13907. https://doi.org/10.1021/jacs.1c06656
- Viola Caroline D’mello, Sanjay Wategaonkar. Characterization and Photofragmentation Studies of the Benzimidazole Homodimer: Evidence for Excited-State Charge-Coupled Proton Transfer. The Journal of Physical Chemistry A 2021, 125
(23)
, 4967-4975. https://doi.org/10.1021/acs.jpca.1c01591
- Eva Gougoula, Daniel J. Cole, Nicholas R. Walker. Bifunctional Hydrogen Bonding of Imidazole with Water Explored by Rotational Spectroscopy and DFT Calculations. The Journal of Physical Chemistry A 2020, 124
(13)
, 2649-2659. https://doi.org/10.1021/acs.jpca.0c00544
- Andriy Pysanenko, Alena Habartová, Pavla Svrčková, Jozef Lengyel, Viktoriya Poterya, Martina Roeselová, Juraj Fedor, and Michal Fárník . Lack of Aggregation of Molecules on Ice Nanoparticles. The Journal of Physical Chemistry A 2015, 119
(34)
, 8991-8999. https://doi.org/10.1021/acs.jpca.5b05368
- Maria A. Trachsel, Philipp Ottiger, Hans-Martin Frey, Chantal Pfaffen, Angela Bihlmeier, Wim Klopper, and Samuel Leutwyler . Modeling the Histidine–Phenylalanine Interaction: The NH···π Hydrogen Bond of Imidazole·Benzene. The Journal of Physical Chemistry B 2015, 119
(25)
, 7778-7790. https://doi.org/10.1021/jp512766r
- Jie Zhang, Yunteng He, William M. Freund, and Wei Kong . Electron Diffraction of Superfluid Helium Droplets. The Journal of Physical Chemistry Letters 2014, 5
(11)
, 1801-1805. https://doi.org/10.1021/jz5006829
- Sumit Kumar, Ankita Mukherjee, and Aloke Das . Structure of Indole···Imidazole Heterodimer in a Supersonic Jet: A Gas Phase Study on the Interaction between the Aromatic Side Chains of Tryptophan and Histidine Residues in Proteins. The Journal of Physical Chemistry A 2012, 116
(47)
, 11573-11580. https://doi.org/10.1021/jp309167a
- Viktoriya Poterya, Václav Profant and Michal Fárník, Lukáš Šištík and Petr Slavíček, Udo Buck. Photoinduced Processes in Hydrogen Bonded System: Photodissociation of Imidazole Clusters. The Journal of Physical Chemistry A 2009, 113
(52)
, 14583-14590. https://doi.org/10.1021/jp904145q
- Rachel Crespo-Otero, Kenny Bravo-Rodríguez, Reynier Suardíaz, Luis A. Montero and José M. García de la Vega . Theoretical Study of Imidazole···NO Complexes. The Journal of Physical Chemistry A 2009, 113
(52)
, 14595-14605. https://doi.org/10.1021/jp9042733
- Myong Yong Choi, Feng Dong, Sang Woo Han and Roger E. Miller. Nonplanarity of Adenine: Vibrational Transition Moment Angle Studies in Helium Nanodroplets. The Journal of Physical Chemistry A 2008, 112
(31)
, 7185-7190. https://doi.org/10.1021/jp8012688
- Hai-Chou Chang,, Jyh-Chiang Jiang,, Jong-Chang Su,, Chao-Yen Chang, and, Sheng Hsien Lin. Evidence of Rotational Isomerism in 1-Butyl-3-methylimidazolium Halides: A Combined High-Pressure Infrared and Raman Spectroscopic Study. The Journal of Physical Chemistry A 2007, 111
(38)
, 9201-9206. https://doi.org/10.1021/jp071055r
- Myong Yong Choi and, Roger E. Miller. Infrared Laser Spectroscopy of Uracil and Thymine in Helium Nanodroplets: Vibrational Transition Moment Angle Study. The Journal of Physical Chemistry A 2007, 111
(13)
, 2475-2479. https://doi.org/10.1021/jp0674625
- Denis S. Tikhonov, Valeriu Scutelnic, Dmitry I. Sharapa, Alina A. Krotova, Alena V. Dmitrieva, Daniel A. Obenchain, Melanie Schnell. Structures of the (Imidazole)nH+ ... Ar (n=1,2,3) complexes determined from IR spectroscopy and quantum chemical calculations. Structural Chemistry 2023, 34
(1)
, 203-213. https://doi.org/10.1007/s11224-022-02053-4
- Katia Le Barbu-Debus, Ariel Pérez-Mellor, Valéria Lepère, Anne Zehnacker. How change in chirality prevents β-amyloid type interaction in a protonated cyclic dipeptide dimer. Physical Chemistry Chemical Physics 2022, 24
(33)
, 19783-19791. https://doi.org/10.1039/D2CP03110H
- Taija L. Fischer, Margarethe Bödecker, Anne Zehnacker-Rentien, Ricardo A. Mata, Martin A. Suhm. Setting up the HyDRA blind challenge for the microhydration of organic molecules. Physical Chemistry Chemical Physics 2022, 94 https://doi.org/10.1039/D2CP01119K
- Benjamin S. Kamerin, John W. Niman, Vitaly V. Kresin. Electric deflection of imidazole dimers and trimers in helium nanodroplets: Dipole moments, structure, and fragmentation. The Journal of Chemical Physics 2020, 153
(8)
https://doi.org/10.1063/5.0020844
- Youngwook Park. Method. 2020, 9-17. https://doi.org/10.1007/978-981-15-8693-4_2
- John W. Niman, Benjamin S. Kamerin, Lorenz Kranabetter, Daniel J. Merthe, Jiří Suchan, Petr Slavíček, Vitaly V. Kresin. Direct detection of polar structure formation in helium nanodroplets by beam deflection measurements. Physical Chemistry Chemical Physics 2019, 21
(37)
, 20764-20769. https://doi.org/10.1039/C9CP04322E
- Thomas Forsting, Julia Zischang, Martin A. Suhm, Marco Eckhoff, Benjamin Schröder, Ricardo A. Mata. Strained hydrogen bonding in imidazole trimer: a combined infrared, Raman, and theory study. Physical Chemistry Chemical Physics 2019, 21
(11)
, 5989-5998. https://doi.org/10.1039/C9CP00399A
- A. Gutiérrez-Quintanilla, M. Briant, E. Mengesha, M.-A. Gaveau, J.-M. Mestdagh, B. Soep, C. Crépin, L. Poisson. A HElium NanoDroplet Isolation (HENDI) investigation of the weak hydrogen bonding in the propyne dimer (CH
3
CCH)
2. Physical Chemistry Chemical Physics 2018, 20
(45)
, 28658-28666. https://doi.org/10.1039/C8CP04738C
- Aleksandr Y. Pereverzev, Vladimir Kopysov, Oleg V. Boyarkin. High Susceptibility of Histidine to Charge Solvation Revealed by Cold Ion Spectroscopy. Angewandte Chemie 2017, 129
(49)
, 15845-15849. https://doi.org/10.1002/ange.201709437
- Aleksandr Y. Pereverzev, Vladimir Kopysov, Oleg V. Boyarkin. High Susceptibility of Histidine to Charge Solvation Revealed by Cold Ion Spectroscopy. Angewandte Chemie International Edition 2017, 56
(49)
, 15639-15643. https://doi.org/10.1002/anie.201709437
- Ahreum Min, Ahreum Ahn, Cheol Joo Moon, Ji Hoon Lee, Yeon Guk Seong, Seong Keun Kim, Myong Yong Choi. Conformational structures of jet-cooled acetaminophen–water clusters: a gas phase spectroscopic and computational study. Physical Chemistry Chemical Physics 2017, 19
(6)
, 4840-4848. https://doi.org/10.1039/C6CP06863D
- John C. Mullaney, Daniel P. Zaleski, David P. Tew, Nicholas R. Walker, Anthony C. Legon. Geometry of an Isolated Dimer of Imidazole Characterised by Rotational Spectroscopy and Ab Initio Calculations. ChemPhysChem 2016, 17
(8)
, 1154-1158. https://doi.org/10.1002/cphc.201501179
- Jie Zhang, Lei Chen, William M. Freund, Wei Kong. Effective doping of low energy ions into superfluid helium droplets. The Journal of Chemical Physics 2015, 143
(7)
https://doi.org/10.1063/1.4928689
- Aditi Bhattacherjee, Sanjay Wategaonkar. Conformational preferences of monohydrated clusters of imidazole derivatives revisited. Physical Chemistry Chemical Physics 2015, 17
(31)
, 20080-20092. https://doi.org/10.1039/C5CP02422F
- Lei Chen, Jie Zhang, William M. Freund, Wei Kong. Effect of kinetic energy on the doping efficiency of cesium cations into superfluid helium droplets. The Journal of Chemical Physics 2015, 143
(4)
https://doi.org/10.1063/1.4927471
- Marco Martinez Gonzalez, Kenny Bravo-Rodriguez, Reynier Suardiaz, José Manuel Garcia de la Vega, Luis Alberto Montero, Elsa Sanchez-Garcia, Rachel Crespo-Otero. Complexes of nitric oxide with water and imidazole. Theoretical Chemistry Accounts 2015, 134
(7)
https://doi.org/10.1007/s00214-015-1691-x
- Ilya G. Shenderovich, Stepan B. Lesnichin, Chingkuang Tu, David N. Silverman, Peter M. Tolstoy, Gleb S. Denisov, Hans‐Heinrich Limbach. NMR Studies of Active‐Site Properties of Human Carbonic Anhydrase II by Using
15
N‐Labeled 4‐Methylimidazole as a Local Probe and Histidine Hydrogen‐Bond Correlations. Chemistry – A European Journal 2015, 21
(7)
, 2915-2929. https://doi.org/10.1002/chem.201404083
- K. Boussouf, R. Boulmene, M. Prakash, N. Komiha, M. Taleb, M. Mogren Al-Mogren, M. Hochlaf. Characterization of Zn
q+
–imidazole (q = 0, 1, 2) organometallic complexes: DFT methods vs. standard and explicitly correlated post-Hartree–Fock methods. Physical Chemistry Chemical Physics 2015, 17
(22)
, 14417-14426. https://doi.org/10.1039/C4CP06108J
- Jonas Altnöder, Juhyon J. Lee, Katharina E. Otto, Martin A. Suhm. Molecular Recognition in Glycolaldehyde, the Simplest Sugar: Two Isolated Hydrogen Bonds Win Over One Cooperative Pair. ChemistryOpen 2012, 1
(6)
, 269-275. https://doi.org/10.1002/open.201200031
- Thomas Häber, Karl Kleinermanns. Multiphoton Resonance Spectroscopy of Biological Molecules. 2011https://doi.org/10.1002/9780470749593.hrs094
- Julia Zischang, Juhyon J. Lee, Martin A. Suhm. Communication: Where does the first water molecule go in imidazole?. The Journal of Chemical Physics 2011, 135
(6)
https://doi.org/10.1063/1.3624841
- Ah-Reum Ahn, Seung-Jun Lee, Seul-Ki Lee, Ah-Reum Min, Yu-Sic Kim, Hyeon-Jin Jung, Seong-Min Hong, Joon-Hwa Lee, Myong-Yong Choi, Roger E. Miller. Imidazole Trimer-Water Complexes in Superfluid Helium Nanodroplets: Water Stretching Modes. Bulletin of the Korean Chemical Society 2011, 32
(4)
, 1407-1410. https://doi.org/10.5012/bkcs.2011.32.4.1407
- Seul-Ki Lee, Seung-Jun Lee, Ah-Reum Ahn, Yu-Sic Kim, Ah-Reum Min, Myong-Yong Choi, Roger E. Miller. Infrared Spectroscopy of Imidazole Trimer in Helium Nanodroplets: Free NH Stretch Mode. Bulletin of the Korean Chemical Society 2011, 32
(3)
, 885-888. https://doi.org/10.5012/bkcs.2011.32.3.885
- Helen K. Gerardi, George H. Gardenier, Usha Viswanathan, Scott M. Auerbach, Mark A. Johnson. Vibrational predissociation spectroscopy and theory of Ar-tagged, protonated Imidazole (Im) Im1–3H+·Ar clusters. Chemical Physics Letters 2011, 501
(4-6)
, 172-178. https://doi.org/10.1016/j.cplett.2010.10.062
- Ah-Reum Min, Seung-Jun Lee, Myong-Yong Choi, Roger E. Miller. Electric Field Dependence Experiments and ab Initio Calculations of Three Cytosine Tautomers in Superfluid Helium Nanodroplets. Bulletin of the Korean Chemical Society 2009, 30
(12)
, 3039-3044. https://doi.org/10.5012/bkcs.2009.30.12.3039
- Myong Yong Choi, Roger E. Miller. Imidazole dimer and its water complexes formed in superfluid helium nanodroplets: Infrared spectroscopic studies of free OH vibrational stretching modes. Chemical Physics Letters 2009, 477
(4-6)
, 276-280. https://doi.org/10.1016/j.cplett.2009.07.032
- Seung Jun Lee, Myong Yong Choi, Roger E. Miller. Vibrational spectroscopy of xanthine in superfluid helium nanodroplets. Chemical Physics Letters 2009, 475
(1-3)
, 24-29. https://doi.org/10.1016/j.cplett.2009.05.016
- Wei Kong, Linsen Pei, Jie Zhang. Linear dichroism spectroscopy of gas phase biological molecules embedded in superfluid helium droplets. International Reviews in Physical Chemistry 2009, 28
(1)
, 33-52. https://doi.org/10.1080/01442350802573678
- Linsen Pei, Jie Zhang, Wei Kong, Dingguo Xu, Hua Guo. Polarization spectroscopy of aluminum phthalocyanine hydroxide embedded in superfluid helium droplets. Chemical Physics Letters 2008, 462
(4-6)
, 173-177. https://doi.org/10.1016/j.cplett.2008.07.109
- Galina M. Chaban, R. Benny Gerber. Anharmonic vibrational spectroscopy calculations with electronic structure potentials: comparison of MP2 and DFT for organic molecules. Theoretical Chemistry Accounts 2008, 120
(1-3)
, 273-279. https://doi.org/10.1007/s00214-007-0299-1
- JEAN-PIERRE SCHERMANN. Spectroscopy. 2008, 59-128. https://doi.org/10.1016/B978-044452708-0.50003-4
- Linsen Pei, Jie Zhang, Wei Kong. Electronic polarization spectroscopy of metal phthalocyanine chloride compounds in superfluid helium droplets. The Journal of Chemical Physics 2007, 127
(17)
, 174308. https://doi.org/10.1063/1.2803186
Article Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.
Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.
The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated.