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Development of Novel Phosphonodifluoromethyl-Containing Phosphotyrosine Mimetics and a First-In-Class, Potent, Selective, and Bioavailable Inhibitor of Human CDC14 Phosphatases
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    Article

    Development of Novel Phosphonodifluoromethyl-Containing Phosphotyrosine Mimetics and a First-In-Class, Potent, Selective, and Bioavailable Inhibitor of Human CDC14 Phosphatases
    Click to copy article linkArticle link copied!

    • Jiajun Dong
      Jiajun Dong
      Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States
      More by Jiajun Dong
    • Brenson A. Jassim
      Brenson A. Jassim
      Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States
    • Kedric L. Milholland
      Kedric L. Milholland
      Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907, United States
    • Zihan Qu
      Zihan Qu
      Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
      More by Zihan Qu
    • Yunpeng Bai
      Yunpeng Bai
      Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States
      More by Yunpeng Bai
    • Yiming Miao
      Yiming Miao
      Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States
      More by Yiming Miao
    • Jinmin Miao
      Jinmin Miao
      Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States
      More by Jinmin Miao
    • Yuan Ma
      Yuan Ma
      Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States
      More by Yuan Ma
    • Jianping Lin
      Jianping Lin
      Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States
      More by Jianping Lin
    • Mark C. Hall
      Mark C. Hall
      Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907, United States
      Institute for Drug Discovery, Purdue University, West Lafayette, Indiana 47907, United States
      Institute for Cancer Research, Purdue University, West Lafayette, Indiana 47907, United States
      Institute for Inflammation, Immunology, and Infectious Disease, Purdue University, West Lafayette, Indiana 47907, United States
      More by Mark C. Hall
    • Zhong-Yin Zhang*
      Zhong-Yin Zhang
      Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States
      Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
      Institute for Drug Discovery, Purdue University, West Lafayette, Indiana 47907, United States
      Institute for Cancer Research, Purdue University, West Lafayette, Indiana 47907, United States
      Institute for Inflammation, Immunology, and Infectious Disease, Purdue University, West Lafayette, Indiana 47907, United States
      *Email: [email protected]
    Other Access OptionsSupporting Information (7)

    Journal of Medicinal Chemistry

    Cite this: J. Med. Chem. 2024, 67, 11, 8817–8835
    Click to copy citationCitation copied!
    https://doi.org/10.1021/acs.jmedchem.4c00149
    Published May 20, 2024
    Copyright © 2024 American Chemical Society

    Abstract

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    Together with protein tyrosine kinases, protein tyrosine phosphatases (PTPs) control protein tyrosine phosphorylation and regulate numerous cellular functions. Dysregulated PTP activity is associated with the onset of multiple human diseases. Nevertheless, understanding of the physiological function and disease biology of most PTPs remains limited, largely due to the lack of PTP-specific chemical probes. In this study, starting from a well-known nonhydrolyzable phosphotyrosine (pTyr) mimetic, phosphonodifluoromethyl phenylalanine (F2Pmp), we synthesized 7 novel phosphonodifluoromethyl-containing bicyclic/tricyclic aryl derivatives with improved cell permeability and potency toward various PTPs. Furthermore, with fragment- and structure-based design strategies, we advanced compound 9 to compound 15, a first-in-class, potent, selective, and bioavailable inhibitor of human CDC14A and B phosphatases. This study demonstrates the applicability of the fragment-based design strategy in creating potent, selective, and bioavailable PTP inhibitors and provides a valuable probe for interrogating the biological roles of hCDC14 phosphatases and assessing their potential for therapeutic interventions.

    Copyright © 2024 American Chemical Society

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    Supporting Information

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    The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.jmedchem.4c00149.

    • 1H NMR and 13C NMR spectra for all final compounds; LC-MS spectra of compounds 9 and 15 (PDF)

    • Table of molecular formula strings with biochemical data (CSV)

    • Docking of compound 9 with hCDC14B (from PDB entry 1OHC) (PDB)

    • CD45 (from PDB entry 1YGU) (PDB)

    • Laforin (from PDB entry 4RKK) (PDB)

    • PTP1B (from PDB entry 1PXH) (PDB)

    • Docking of compound 15 with hCDC14B (from PDB entry 1OHC) (PDB)

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    Journal of Medicinal Chemistry

    Cite this: J. Med. Chem. 2024, 67, 11, 8817–8835
    Click to copy citationCitation copied!
    https://doi.org/10.1021/acs.jmedchem.4c00149
    Published May 20, 2024
    Copyright © 2024 American Chemical Society

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